SCOPe 2.06: Protein: automated matches

Lineage for Protein: automated matches

Root: SCOPe 2.06
Class d: Alpha and beta proteins (a+b) [53931] (385 folds)
Fold d.93: SH2-like [55549] (1 superfamily)
3 layers: a/b/a; antiparallel beta-sheet of 5 strands is flanked by two helices
Superfamily d.93.1: SH2 domain [55550] (2 families)
Family d.93.1.0: automated matches [191409] (1 protein)
not a true family
Protein automated matches [190561] (4 species)
not a true protein

Species:

Human (Homo sapiens) [TaxId:9606] [187549] (49 PDB entries)
1. Domain for 1wqu:
  - Domain d1wqua1: 1wqu A:8-108 [264203]
    Other proteins in same PDB: d1wqua2, d1wqua3
    automated match to d2dlya_
2. Domain for 1z3k:
  - Domain d1z3ka_: 1z3k A: [241107]
    automated match to d2ciaa_
3. Domains for 2b3o:
  1. Domain d2b3oa1: 2b3o A:2-108 [241256]
    Other proteins in same PDB: d2b3oa3
    automated match to d2shpa2
  2. Domain d2b3oa2: 2b3o A:109-215 [241257]
    Other proteins in same PDB: d2b3oa3
    automated match to d2shpa3
4. Domain for 2ci8:
  - Domain d2ci8a1: 2ci8 A:281-377 [163413]
    Other proteins in same PDB: d2ci8a2, d2ci8a3
    automated match to d1bm2a_
    complexed with 1pe, so4
5. Domain for 2cia:
  - Domain d2ciaa1: 2cia A:284-380 [193824]
    Other proteins in same PDB: d2ciaa2
    automated match to d2ci8a_
    complexed with ipa, mpd
6. Domain for 2dcr:
  - Domain d2dcra1: 2dcr A:8-108 [264250]
    Other proteins in same PDB: d2dcra2, d2dcra3
    automated match to d2dlya_
7. Domain for 2dlz:
  - Domain d2dlza1: 2dlz A:8-112 [241602]
    Other proteins in same PDB: d2dlza2, d2dlza3
    automated match to d2fcia1
8. Domain for 2dm0:
  - Domain d2dm0a1: 2dm0 A:8-119 [241603]
    Other proteins in same PDB: d2dm0a2, d2dm0a3
    automated match to d1csza_
9. Domain for 2ecd:
  - Domain d2ecda1: 2ecd A:8-113 [241720]
    Other proteins in same PDB: d2ecda2, d2ecda3
    automated match to d1csza_
10. Domain for 2ekx:
  - Domain d2ekxa1: 2ekx A:8-110 [241773]
    Other proteins in same PDB: d2ekxa2
    automated match to d1oo4a_
11. Domain for 2ge9:
  - Domain d2ge9a_: 2ge9 A: [241920]
    automated match to d3uyoa_
12. Domain for 2gsb:
  - Domain d2gsba1: 2gsb A:8-113 [241974]
    Other proteins in same PDB: d2gsba2, d2gsba3
    automated match to d3n84b_
13. Domain for 2kk6:
  - Domain d2kk6a1: 2kk6 A:12-116 [242542]
    Other proteins in same PDB: d2kk6a2
    automated match to d3uyoa_
14. Domain for 2lnx:
  - Domain d2lnxa_: 2lnx A: [242948]
    automated match to d1ab2a_
15. Domain for 2mk2:
  - Domain d2mk2a1: 2mk2 A:12-109 [243192]
    Other proteins in same PDB: d2mk2a2
    automated match to d1i3za_
16. Domain for 2ysx:
  - Domain d2ysxa1: 2ysx A:8-119 [244822]
    Other proteins in same PDB: d2ysxa2
    automated match to d1ab2a_
17. Domain for 3eac:
  - Domain d3eaca_: 3eac A: [261501]
    automated match to d1ab2a_
18. Domain for 3eaz:
  - Domain d3eaza_: 3eaz A: [209448]
    automated match to d3s9ka_
    mutant
19. Domain for 3nhn:
  - Domain d3nhna2: 3nhn A:146-246 [213954]
    Other proteins in same PDB: d3nhna1
    automated match to d2ptka2
20. Domains for 3ps5:
  1. Domain d3ps5a1: 3ps5 A:1-108 [248637]
    Other proteins in same PDB: d3ps5a3
    automated match to d2shpa2
    complexed with so4
  2. Domain d3ps5a2: 3ps5 A:109-215 [248638]
    Other proteins in same PDB: d3ps5a3
    automated match to d2shpa3
    complexed with so4
21. Domain for 3vgo:
  - Domain d3vgoa3: 3vgo A:256-339 [250561]
    Other proteins in same PDB: d3vgoa1, d3vgoa2
    automated match to d1b47a3
22. Domain for 3vrn:
  - Domain d3vrna3: 3vrn A:234-320 [250665]
    Other proteins in same PDB: d3vrna1, d3vrna2
    automated match to d1b47a3
    complexed with ca
23. Domains for 3vrq:
  1. Domain d3vrqa2: 3vrq A:234-320 [250667]
    Other proteins in same PDB: d3vrqa1, d3vrqb1
    automated match to d1b47a3
    complexed with ca; mutant
  2. Domain d3vrqb2: 3vrq B:234-320 [250669]
    Other proteins in same PDB: d3vrqa1, d3vrqb1
    automated match to d1b47a3
    complexed with ca; mutant
24. Domains for 3vs7:
  1. Domain d3vs7a2: 3vs7 A:147-249 [250671]
    Other proteins in same PDB: d3vs7a1, d3vs7a3, d3vs7a4, d3vs7b1, d3vs7b3, d3vs7b4
    automated match to d1fmka2
    complexed with ca, cl, ks1
  2. Domain d3vs7b2: 3vs7 B:147-249 [250674]
    Other proteins in same PDB: d3vs7a1, d3vs7a3, d3vs7a4, d3vs7b1, d3vs7b3, d3vs7b4
    automated match to d1fmka2
    complexed with ca, cl, ks1
25. Domain for 4d8k:
  - Domain d4d8ka2: 4d8k A:121-226 [219573]
    Other proteins in same PDB: d4d8ka1
    automated match to d1opka2
    complexed with gol, so4
26. Domains for 4dgp:
  1. Domain d4dgpa1: 4dgp A:3-110 [251443]
    Other proteins in same PDB: d4dgpa3
    automated match to d2shpa2
  2. Domain d4dgpa2: 4dgp A:111-218 [251444]
    Other proteins in same PDB: d4dgpa3
    automated match to d2shpa3
27. Domains for 4dgx:
  1. Domain d4dgxa1: 4dgx A:3-110 [251446]
    Other proteins in same PDB: d4dgxa3
    automated match to d2shpa2
    mutant
  2. Domain d4dgxa2: 4dgx A:111-218 [251447]
    Other proteins in same PDB: d4dgxa3
    automated match to d2shpa3
    mutant
28. Domains for 4gwf:
  1. Domain d4gwfa1: 4gwf A:2-110 [252337]
    Other proteins in same PDB: d4gwfa3, d4gwfb3
    automated match to d2shpa2
    complexed with edo, gol, peg, pge; mutant
  2. Domain d4gwfa2: 4gwf A:111-218 [252338]
    Other proteins in same PDB: d4gwfa3, d4gwfb3
    automated match to d2shpa3
    complexed with edo, gol, peg, pge; mutant
  3. Domain d4gwfb1: 4gwf B:3-110 [252340]
    Other proteins in same PDB: d4gwfa3, d4gwfb3
    automated match to d2shpa2
    complexed with edo, gol, peg, pge; mutant
  4. Domain d4gwfb2: 4gwf B:111-218 [252341]
    Other proteins in same PDB: d4gwfa3, d4gwfb3
    automated match to d2shpa3
    complexed with edo, gol, peg, pge; mutant
29. Domains for 4h1o:
  1. Domain d4h1oa1: 4h1o A:2-110 [252366]
    Other proteins in same PDB: d4h1oa3
    automated match to d2shpa2
    complexed with edo; mutant
  2. Domain d4h1oa2: 4h1o A:111-218 [252367]
    Other proteins in same PDB: d4h1oa3
    automated match to d2shpa3
    complexed with edo; mutant
30. Domains for 4h34:
  1. Domain d4h34a1: 4h34 A:4-110 [252370]
    Other proteins in same PDB: d4h34a3
    automated match to d2shpa2
    complexed with edo, gol; mutant
  2. Domain d4h34a2: 4h34 A:111-218 [252371]
    Other proteins in same PDB: d4h34a3
    automated match to d2shpa3
    complexed with edo, gol; mutant
31. Domain for 4je4:
  - Domain d4je4a1: 4je4 A:3-103 [227617]
    Other proteins in same PDB: d4je4a2
    automated match to d2fcia1
32. Domain for 4jeg:
  - Domain d4jega1: 4jeg A:102-217 [229481]
    Other proteins in same PDB: d4jega2
    automated match to d2fcia1
33. Domains for 4lue:
  1. Domain d4luea2: 4lue A:147-249 [253695]
    Other proteins in same PDB: d4luea1, d4luea3, d4luea4, d4lueb1, d4lueb3, d4lueb4
    automated match to d1fmka2
    complexed with ca, cl, gol, imd, vse
  2. Domain d4lueb2: 4lue B:147-249 [253698]
    Other proteins in same PDB: d4luea1, d4luea3, d4luea4, d4lueb1, d4lueb3, d4lueb4
    automated match to d1fmka2
    complexed with ca, cl, gol, imd, vse
34. Domains for 4nwf:
  1. Domain d4nwfa1: 4nwf A:3-110 [261530]
    Other proteins in same PDB: d4nwfa3, d4nwfb3
    automated match to d2b3oa1
    complexed with edo, gol; mutant
  2. Domain d4nwfa2: 4nwf A:111-218 [261534]
    Other proteins in same PDB: d4nwfa3, d4nwfb3
    automated match to d2b3oa2
    complexed with edo, gol; mutant
  3. Domain d4nwfb1: 4nwf B:3-110 [261525]
    Other proteins in same PDB: d4nwfa3, d4nwfb3
    automated match to d2b3oa1
    complexed with edo, gol; mutant
  4. Domain d4nwfb2: 4nwf B:111-218 [261526]
    Other proteins in same PDB: d4nwfa3, d4nwfb3
    automated match to d2b3oa2
    complexed with edo, gol; mutant
35. Domains for 4nwg:
  1. Domain d4nwga1: 4nwg A:2-110 [261527]
    Other proteins in same PDB: d4nwga3, d4nwgb3
    automated match to d2b3oa1
    complexed with edo, peg, so4; mutant
  2. Domain d4nwga2: 4nwg A:111-218 [261531]
    Other proteins in same PDB: d4nwga3, d4nwgb3
    automated match to d2b3oa2
    complexed with edo, peg, so4; mutant
  3. Domain d4nwgb1: 4nwg B:2-110 [263231]
    Other proteins in same PDB: d4nwga3, d4nwgb3
    automated match to d2b3oa1
    complexed with edo, peg, so4; mutant
  4. Domain d4nwgb2: 4nwg B:111-218 [263232]
    Other proteins in same PDB: d4nwga3, d4nwgb3
    automated match to d3ps5a2
    complexed with edo, peg, so4; mutant
36. Domains for 4ohd:
  1. Domain d4ohda1: 4ohd A:2-110 [259874]
    Other proteins in same PDB: d4ohda3
    automated match to d2b3oa1
    mutant
  2. Domain d4ohda2: 4ohd A:111-218 [259875]
    Other proteins in same PDB: d4ohda3
    automated match to d2b3oa2
    mutant
37. Domains for 4ohe:
  1. Domain d4ohea1: 4ohe A:3-110 [259871]
    Other proteins in same PDB: d4ohea3
    automated match to d2b3oa1
    mutant
  2. Domain d4ohea2: 4ohe A:111-218 [259872]
    Other proteins in same PDB: d4ohea3
    automated match to d2b3oa2
    mutant
38. Domains for 4ohh:
  1. Domain d4ohha1: 4ohh A:3-110 [259865]
    Other proteins in same PDB: d4ohha3
    automated match to d2b3oa1
    mutant
  2. Domain d4ohha2: 4ohh A:111-218 [259866]
    Other proteins in same PDB: d4ohha3
    automated match to d2b3oa2
    mutant
39. Domains for 4ohi:
  1. Domain d4ohia1: 4ohi A:3-110 [259867]
    Other proteins in same PDB: d4ohia3
    automated match to d2b3oa1
    mutant
  2. Domain d4ohia2: 4ohi A:111-218 [259869]
    Other proteins in same PDB: d4ohia3
    automated match to d2b3oa2
    mutant
40. Domains for 4ohl:
  1. Domain d4ohla1: 4ohl A:3-110 [259862]
    Other proteins in same PDB: d4ohla3, d4ohlb3
    automated match to d2b3oa1
    mutant
  2. Domain d4ohla2: 4ohl A:111-218 [259863]
    Other proteins in same PDB: d4ohla3, d4ohlb3
    automated match to d2b3oa2
    mutant
  3. Domain d4ohlb1: 4ohl B:3-110 [263288]
    Other proteins in same PDB: d4ohla3, d4ohlb3
    automated match to d2b3oa1
    mutant
  4. Domain d4ohlb2: 4ohl B:111-218 [263289]
    Other proteins in same PDB: d4ohla3, d4ohlb3
    automated match to d3ps5a2
    mutant
41. Domain for 4xey:
  - Domain d4xeyb1: 4xey B:141-238 [271086]
    Other proteins in same PDB: d4xeya_, d4xeyb2
    automated match to d1opla2
    complexed with 1n1
42. Domains for 5ehp:
  1. Domain d5ehpa1: 5ehp A:3-110 [319354]
    Other proteins in same PDB: d5ehpa3, d5ehpb3
    automated match to d2shpa2
    complexed with 5oa, po4
  2. Domain d5ehpa2: 5ehp A:111-218 [319355]
    Other proteins in same PDB: d5ehpa3, d5ehpb3
    automated match to d2shpa3
    complexed with 5oa, po4
  3. Domain d5ehpb1: 5ehp B:4-110 [319265]
    Other proteins in same PDB: d5ehpa3, d5ehpb3
    automated match to d2shpa2
    complexed with 5oa, po4
  4. Domain d5ehpb2: 5ehp B:111-218 [319266]
    Other proteins in same PDB: d5ehpa3, d5ehpb3
    automated match to d2shpa3
    complexed with 5oa, po4
43. Domains for 5ehr:
  1. Domain d5ehra1: 5ehr A:4-110 [318972]
    Other proteins in same PDB: d5ehra3, d5ehrb3
    automated match to d2shpa2
    complexed with 5od, po4
  2. Domain d5ehra2: 5ehr A:111-218 [318973]
    Other proteins in same PDB: d5ehra3, d5ehrb3
    automated match to d2shpa3
    complexed with 5od, po4
  3. Domain d5ehrb1: 5ehr B:4-110 [318935]
    Other proteins in same PDB: d5ehra3, d5ehrb3
    automated match to d2shpa2
    complexed with 5od, po4
  4. Domain d5ehrb2: 5ehr B:111-218 [318936]
    Other proteins in same PDB: d5ehra3, d5ehrb3
    automated match to d2shpa3
    complexed with 5od, po4
44. Domains for 5i6v:
  1. Domain d5i6va1: 5i6v A:3-110 [315460]
    Other proteins in same PDB: d5i6va3, d5i6vb3
    automated match to d2shpa2
    complexed with gol; mutant
  2. Domain d5i6va2: 5i6v A:111-218 [315461]
    Other proteins in same PDB: d5i6va3, d5i6vb3
    automated match to d2shpa3
    complexed with gol; mutant
  3. Domain d5i6vb1: 5i6v B:2-110 [315540]
    Other proteins in same PDB: d5i6va3, d5i6vb3
    automated match to d2shpa2
    complexed with gol; mutant
  4. Domain d5i6vb2: 5i6v B:111-218 [315541]
    Other proteins in same PDB: d5i6va3, d5i6vb3
    automated match to d2shpa3
    complexed with gol; mutant
45. Domains for 5ibm:
  1. Domain d5ibma1: 5ibm A:4-110 [315486]
    Other proteins in same PDB: d5ibma3, d5ibmb3
    automated match to d2shpa2
    mutant
  2. Domain d5ibma2: 5ibm A:111-218 [315487]
    Other proteins in same PDB: d5ibma3, d5ibmb3
    automated match to d2shpa3
    mutant
  3. Domain d5ibmb1: 5ibm B:3-110 [315468]
    Other proteins in same PDB: d5ibma3, d5ibmb3
    automated match to d2shpa2
    mutant
  4. Domain d5ibmb2: 5ibm B:111-218 [315469]
    Other proteins in same PDB: d5ibma3, d5ibmb3
    automated match to d2shpa3
    mutant
46. Domains for 5ibs:
  1. Domain d5ibsa1: 5ibs A:4-110 [315572]
    Other proteins in same PDB: d5ibsa3, d5ibsb3
    automated match to d2shpa2
    mutant
  2. Domain d5ibsa2: 5ibs A:111-218 [315573]
    Other proteins in same PDB: d5ibsa3, d5ibsb3
    automated match to d2shpa3
    mutant
  3. Domain d5ibsb1: 5ibs B:4-110 [315503]
    Other proteins in same PDB: d5ibsa3, d5ibsb3
    automated match to d2shpa2
    mutant
  4. Domain d5ibsb2: 5ibs B:111-218 [315504]
    Other proteins in same PDB: d5ibsa3, d5ibsb3
    automated match to d2shpa3
    mutant
47. Domain for 5mo4:
  - Domain d5mo4a2: 5mo4 A:140-240 [332640]
    Other proteins in same PDB: d5mo4a1, d5mo4a3
    automated match to d1opla2
    complexed with ay7, nil
48. Domains for 5xzr:
  1. Domain d5xzra1: 5xzr A:1-110 [342909]
    Other proteins in same PDB: d5xzra3
    automated match to d2b3oa1
    complexed with 8j6; mutant
  2. Domain d5xzra2: 5xzr A:111-218 [342910]
    Other proteins in same PDB: d5xzra3
    automated match to d3ps5a2
    complexed with 8j6; mutant
49. Domains for 6bn5:
  1. Domain d6bn5a1: 6bn5 A:6-110 [342924]
    Other proteins in same PDB: d6bn5a3, d6bn5b2
    automated match to d2shpa2
    complexed with dzj
  2. Domain d6bn5a2: 6bn5 A:111-218 [342925]
    Other proteins in same PDB: d6bn5a3, d6bn5b2
    automated match to d2shpa3
    complexed with dzj
  3. Domain d6bn5b1: 6bn5 B:4-110 [342934]
    Other proteins in same PDB: d6bn5a3, d6bn5b2
    automated match to d2shpa2
    complexed with dzj
Monosiga brevicollis [TaxId:81824] [323144] (1 PDB entry)
- Domain for 2rvf:
  - Domain d2rvfa1: 2rvf A:2-97 [323145]
    Other proteins in same PDB: d2rvfa2
    automated match to d1mila_
Mouse (Mus musculus) [TaxId:10090] [226265] (5 PDB entries)
1. Domain for 2dly:
  - Domain d2dlya1: 2dly A:8-115 [241601]
    Other proteins in same PDB: d2dlya2, d2dlya3
    automated match to d1csza_
2. Domains for 2dx0:
  1. Domain d2dx0a_: 2dx0 A: [241653]
    automated match to d1mila_
    complexed with so4
  2. Domain d2dx0b_: 2dx0 B: [241654]
    automated match to d1mila_
    complexed with so4
3. Domain for 2eo6:
  - Domain d2eo6a1: 2eo6 A:8-135 [264283]
    Other proteins in same PDB: d2eo6a2, d2eo6a3
    automated match to d2dm0a_
4. Domain for 3uf4:
  - Domain d3uf4a2: 3uf4 A:147-244 [217331]
    Other proteins in same PDB: d3uf4a1
    automated match to d1fmka2
    complexed with cl, gol, na
5. Domain for 5mtj:
  - Domain d5mtja_: 5mtj A: [332651]
    Other proteins in same PDB: d5mtjb_
    automated match to d3uyoa_
    complexed with cxs, so4
Norway rat (Rattus norvegicus) [TaxId:10116] [255150] (2 PDB entries)
1. Domain for 2eob:
  - Domain d2eoba1: 2eob A:8-118 [241784]
    Other proteins in same PDB: d2eoba2, d2eoba3
    automated match to d1h9oa_
2. Domain for 2rsy:
  - Domain d2rsya1: 2rsy A:80-173 [243772]
    Other proteins in same PDB: d2rsya2
    automated match to d3eaza_

More info for Protein automated matches from d.93.1.0: automated matches

Timeline for Protein automated matches from d.93.1.0: automated matches:

Protein automated matches from d.93.1.0: automated matches first appeared in SCOPe 2.01
Protein automated matches from d.93.1.0: automated matches appears in SCOPe 2.05
Protein automated matches from d.93.1.0: automated matches appears in SCOPe 2.07
Protein automated matches from d.93.1.0: automated matches appears in the current release, SCOPe 2.08