Lineage for Protein: automated matches

  1. Root: SCOPe 2.03
  2. 1287432Class b: All beta proteins [48724] (174 folds)
  3. 1325092Fold b.61: Streptavidin-like [50875] (8 superfamilies)
    barrel, closed; n=8, S=10; meander
  4. 1325093Superfamily b.61.1: Avidin/streptavidin [50876] (2 families) (S)
  5. 1325518Family b.61.1.0: automated matches [191402] (1 protein)
    not a true family
  6. 1325519Protein automated matches [190537] (7 species)
    not a true protein

Species:

  1. 1325520Bradyrhizobium japonicum [TaxId:224911] [234468] (3 PDB entries)
    1. Domain for 4ggr:
    2. Domains for 4ggt:
      1. 1325525Domain d4ggta_: 4ggt A: [234470]
        automated match to d4jnja_
      2. 1325526Domain d4ggtb_: 4ggt B: [234472]
        automated match to d4jnja_
    3. Domains for 4ggz:
      1. 1325521Domain d4ggza_: 4ggz A: [234471]
        automated match to d4jnja_
        complexed with btn
      2. 1325522Domain d4ggzb_: 4ggz B: [234473]
        automated match to d4jnja_
        complexed with btn
      3. 1325523Domain d4ggzc_: 4ggz C: [234474]
        automated match to d4jnja_
        complexed with btn
      4. 1325524Domain d4ggzd_: 4ggz D: [234475]
        automated match to d4jnja_
        complexed with btn
  2. 1325528Bradyrhizobium japonicum [TaxId:375] [228284] (2 PDB entries)
    1. Domains for 2y32:
      1. 1325533Domain d2y32a_: 2y32 A: [231591]
        automated match to d4bbod_
      2. 1325534Domain d2y32b_: 2y32 B: [231592]
        automated match to d4bbod_
      3. 1325535Domain d2y32c_: 2y32 C: [231593]
        automated match to d4bbod_
      4. 1325536Domain d2y32d_: 2y32 D: [231594]
        automated match to d4bbod_
    2. Domains for 4bbo:
      1. 1325529Domain d4bboa_: 4bbo A: [234145]
        automated match to d4bbod_
        complexed with act, btn, gol
      2. 1325530Domain d4bbob_: 4bbo B: [234146]
        automated match to d4bbod_
        complexed with act, btn, gol
      3. 1325531Domain d4bboc_: 4bbo C: [234147]
        automated match to d4bbod_
        complexed with act, btn, gol
      4. 1325532Domain d4bbod_: 4bbo D: [228285]
        automated match to d3szha_
        complexed with act, btn, gol
  3. 1325537Chicken (Gallus gallus) [TaxId:9031] [187505] (2 PDB entries)
    1. Domain for 2c1q:
    2. Domains for 2c1s:
      1. 1325538Domain d2c1sa_: 2c1s A: [163229]
        automated match to d1avdb_
        complexed with bso
      2. 1325539Domain d2c1sb_: 2c1s B: [163230]
        automated match to d1avdb_
        complexed with bso
  4. 1325541Danio rerio [TaxId:7955] [229041] (1 PDB entry)
  5. 1325558Pleurotus cornucopiae [TaxId:5321] [188786] (1 PDB entry)
  6. 1325561Shewanella denitrificans [TaxId:318161] [195517] (5 PDB entries)
    1. Domains for 3szh:
      1. 1325562Domain d3szha_: 3szh A: [216615]
        automated match to d3szig_
      2. 1325563Domain d3szhb_: 3szh B: [216616]
        automated match to d3szig_
      3. 1325564Domain d3szhc_: 3szh C: [216617]
        automated match to d3szig_
      4. 1325565Domain d3szhd_: 3szh D: [216618]
        automated match to d3szig_
      5. 1325566Domain d3szhe_: 3szh E: [216619]
        automated match to d3szig_
      6. 1325567Domain d3szhf_: 3szh F: [216620]
        automated match to d3szig_
    2. Domains for 3szi:
      1. 1325572Domain d3szia_: 3szi A: [195525]
        automated match to d1kl4b_
        complexed with fmt
      2. 1325573Domain d3szib_: 3szi B: [195523]
        automated match to d1kl4b_
        complexed with fmt
      3. 1325574Domain d3szic_: 3szi C: [195524]
        automated match to d1kl4b_
        complexed with fmt
      4. 1325575Domain d3szid_: 3szi D: [200735]
        automated match to d3szig_
        complexed with fmt
      5. 1325576Domain d3szie_: 3szi E: [200736]
        automated match to d3szig_
        complexed with fmt
      6. 1325577Domain d3szif_: 3szi F: [200737]
        automated match to d3szia_
        complexed with fmt
      7. 1325578Domain d3szig_: 3szi G: [195526]
        automated match to d1kl4b_
        complexed with fmt
      8. 1325579Domain d3szih_: 3szi H: [195519]
        automated match to d1kl4b_
        complexed with fmt
      9. 1325580Domain d3szii_: 3szi I: [195522]
        automated match to d1kl4b_
        complexed with fmt
      10. 1325581Domain d3szij_: 3szi J: [195518]
        automated match to d1kl4b_
        complexed with fmt
      11. 1325582Domain d3szik_: 3szi K: [195520]
        automated match to d1kl4b_
        complexed with fmt
      12. 1325583Domain d3szil_: 3szi L: [200738]
        automated match to d3szig_
        complexed with fmt
    3. Domains for 3szj:
      1. 1325584Domain d3szja_: 3szj A: [216621]
        automated match to d3szig_
        complexed with acy, btn, co3, gol
      2. 1325585Domain d3szjb_: 3szj B: [216622]
        automated match to d3szig_
        complexed with acy, btn, co3, gol
    4. Domain for 3t2w:
    5. Domains for 3t2x:
      1. 1325568Domain d3t2xa_: 3t2x A: [195605]
        automated match to d1kl4b_
        mutant
      2. 1325569Domain d3t2xb_: 3t2x B: [195603]
        automated match to d1kl4b_
        mutant
      3. 1325570Domain d3t2xc_: 3t2x C: [195602]
        automated match to d1kl4b_
        mutant
      4. 1325571Domain d3t2xd_: 3t2x D: [195606]
        automated match to d1kl4b_
        mutant
  7. 1325587Western clawed frog (Xenopus tropicalis) [TaxId:8364] [188454] (2 PDB entries)
    1. Domains for 2uyw:
      1. 1325588Domain d2uywa_: 2uyw A: [168249]
        automated match to d1rava_
        complexed with btn, fmt
      2. 1325589Domain d2uywd_: 2uyw D: [168250]
        automated match to d1rava_
        complexed with btn, fmt
    2. Domains for 2uz2:
      1. 1325590Domain d2uz2a_: 2uz2 A: [168252]
        automated match to d1rava_
        complexed with act, btn
      2. 1325591Domain d2uz2d_: 2uz2 D: [168253]
        automated match to d1rava_
        complexed with act, btn

More info for Protein automated matches from b.61.1.0: automated matches

Timeline for Protein automated matches from b.61.1.0: automated matches: