SCOPe 2.06: Protein: automated matches

Lineage for Protein: automated matches

Root: SCOPe 2.06
Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
Fold c.68: Nucleotide-diphospho-sugar transferases [53447] (1 superfamily)
3 layers: a/b/a; mixed beta-sheet of 7 strands, order 3214657; strand 6 is antiparallel to the rest
Superfamily c.68.1: Nucleotide-diphospho-sugar transferases [53448] (20 families)
Family c.68.1.22: Glycosylating toxin catalytic domain-like [159726] (4 proteins)
contains Glycosyltransferase sugar-binding region containing DXD motif, Pfam PF04488
Protein automated matches [190532] (4 species)
not a true protein

Species:

Clostridioides difficile [TaxId:1496] [334302] (3 PDB entries)
1. Domain for 5uqm:
  - Domain d5uqma_: 5uqm A: [334356]
    automated match to d2bvla1
    complexed with mn, so4, u2f
2. Domain for 5uqn:
  - Domain d5uqna1: 5uqn A:3-542 [334447]
    Other proteins in same PDB: d5uqna2
    automated match to d2bvla1
    complexed with mn, so4, u2f
3. Domains for 5uqt:
  1. Domain d5uqta1: 5uqt A:3-539 [334351]
    Other proteins in same PDB: d5uqta2, d5uqtb2
    automated match to d2bvla1
    complexed with agi, mn
  2. Domain d5uqtb1: 5uqt B:3-539 [334303]
    Other proteins in same PDB: d5uqta2, d5uqtb2
    automated match to d2bvla1
    complexed with agi, mn
Clostridium difficile [TaxId:1496] [187493] (1 PDB entry)
- Domain for 2bvm:
  - Domain d2bvma_: 2bvm A: [146220]
    automated match to d2bvla1
    complexed with glc, mn, so4, udp
Clostridium sordellii [TaxId:1505] [188384] (3 PDB entries)
1. Domain for 2vkd:
  - Domain d2vkdb_: 2vkd B: [153219]
    Other proteins in same PDB: d2vkda1, d2vkdc_
    automated match to d2bvla1
    complexed with mn, upg
2. Domains for 2vkh:
  1. Domain d2vkha_: 2vkh A: [153225]
    automated match to d2bvla1
    complexed with ca, upg
  2. Domain d2vkhb_: 2vkh B: [153226]
    automated match to d2bvla1
    complexed with ca, upg
  3. Domain d2vkhc_: 2vkh C: [153227]
    automated match to d2bvla1
    complexed with ca, upg
3. Domains for 2vl8:
  1. Domain d2vl8a_: 2vl8 A: [153266]
    automated match to d2bvla1
    complexed with ca, cts, udp
  2. Domain d2vl8b_: 2vl8 B: [153267]
    automated match to d2bvla1
    complexed with ca, cts, udp
  3. Domain d2vl8c_: 2vl8 C: [153268]
    automated match to d2bvla1
    complexed with ca, cts, udp
Peptoclostridium difficile [TaxId:645463] [342559] (1 PDB entry)
- Domains for 5vqm:
  1. Domain d5vqma_: 5vqm A: [342560]
    Other proteins in same PDB: d5vqmc1, d5vqmc2, d5vqml1, d5vqml2
    automated match to d2bvla1
  2. Domain d5vqmb_: 5vqm B: [342563]
    Other proteins in same PDB: d5vqmc1, d5vqmc2, d5vqml1, d5vqml2
    automated match to d2bvla1

More info for Protein automated matches from c.68.1.22: Glycosylating toxin catalytic domain-like

Timeline for Protein automated matches from c.68.1.22: Glycosylating toxin catalytic domain-like:

Protein automated matches from c.68.1.22: Glycosylating toxin catalytic domain-like first appeared in SCOPe 2.01
Protein automated matches from c.68.1.22: Glycosylating toxin catalytic domain-like appears in SCOPe 2.05
Protein automated matches from c.68.1.22: Glycosylating toxin catalytic domain-like appears in SCOPe 2.07
Protein automated matches from c.68.1.22: Glycosylating toxin catalytic domain-like appears in the current release, SCOPe 2.08