SCOPe Funding Alert: SCOPe support from the NIH ended in April 2016. John-Marc Chandonia is the primary maintainer and has continued to develop SCOPe using vacation time. Three proposals to the NIH for continued funding have been unsuccessful. If our current NIH proposal is not funded, SCOPe will shut down permanently in Summer 2017 as Dr. Chandonia will need to seek a new position.

Lineage for Protein: automated matches

  1. Root: SCOPe 2.06
  2. 1976409Class a: All alpha proteins [46456] (289 folds)
  3. 1976410Fold a.1: Globin-like [46457] (2 superfamilies)
    core: 6 helices; folded leaf, partly opened
  4. 1976411Superfamily a.1.1: Globin-like [46458] (5 families) (S)
  5. 1978832Family a.1.1.3: Phycocyanin-like phycobilisome proteins [46532] (7 protein domains)
    oligomers of two different types of globin-like subunits containing two extra helices at the N-terminus
    binds a bilin chromophore
    automatically mapped to Pfam PF00502
  6. 1979007Protein automated matches [190531] (18 species)
    not a true protein

Species:

  1. 1979008Chroomonas sp. [TaxId:3029] [257042] (1 PDB entry)
  2. 1979011Gloeobacter violaceus [TaxId:33072] [188397] (4 PDB entries)
    1. Domains for 2vjh:
      1. 1979012Domain d2vjha_: 2vjh A: [168645]
        automated match to d1b8da_
        complexed with peb, pub
      2. 1979013Domain d2vjhb_: 2vjh B: [168646]
        automated match to d1qgwd_
        complexed with peb, pub
      3. 1979014Domain d2vjhc_: 2vjh C: [168647]
        automated match to d1b8da_
        complexed with peb, pub
      4. 1979015Domain d2vjhd_: 2vjh D: [168648]
        automated match to d1qgwd_
        complexed with peb, pub
    2. Domains for 2vjr:
      1. 1979030Domain d2vjra_: 2vjr A: [168659]
        automated match to d1i7ya_
        complexed with cyc
      2. 1979031Domain d2vjrb_: 2vjr B: [168660]
        automated match to d1i7yb_
        complexed with cyc
    3. Domains for 2vjt:
      1. 1979028Domain d2vjta_: 2vjt A: [168661]
        automated match to d1kn1a_
        complexed with cyc
      2. 1979029Domain d2vjtb_: 2vjt B: [168662]
        automated match to d1allb_
        complexed with cyc
    4. Domains for 2vml:
      1. 1979016Domain d2vmla_: 2vml A: [168702]
        automated match to d1i7ya_
        complexed with cyc
      2. 1979017Domain d2vmlb_: 2vml B: [168703]
        automated match to d1i7yb_
        complexed with cyc
      3. 1979018Domain d2vmlc_: 2vml C: [168704]
        automated match to d1i7ya_
        complexed with cyc
      4. 1979019Domain d2vmld_: 2vml D: [168705]
        automated match to d1i7yb_
        complexed with cyc
      5. 1979020Domain d2vmle_: 2vml E: [168706]
        automated match to d1i7ya_
        complexed with cyc
      6. 1979021Domain d2vmlf_: 2vml F: [168707]
        automated match to d1i7yb_
        complexed with cyc
      7. 1979022Domain d2vmlg_: 2vml G: [168708]
        automated match to d1i7ya_
        complexed with cyc
      8. 1979023Domain d2vmlh_: 2vml H: [168709]
        automated match to d1i7yb_
        complexed with cyc
      9. 1979024Domain d2vmli_: 2vml I: [168710]
        automated match to d1i7ya_
        complexed with cyc
      10. 1979025Domain d2vmlj_: 2vml J: [168711]
        automated match to d1i7yb_
        complexed with cyc
      11. 1979026Domain d2vmlk_: 2vml K: [168712]
        automated match to d1i7ya_
        complexed with cyc
      12. 1979027Domain d2vmll_: 2vml L: [168713]
        automated match to d1i7yb_
        complexed with cyc
  3. 1979032Hemiselmis andersenii [TaxId:464988] [257044] (1 PDB entry)
  4. 1979039Hemiselmis virescens [TaxId:77927] [257033] (1 PDB entry)
  5. 1979042Leptolyngbya sp. [TaxId:47254] [255594] (1 PDB entry)
  6. 1979067Leptolyngbya sp. [TaxId:574115] [256954] (1 PDB entry)
  7. 1979074Mastigocladus laminosus [TaxId:83541] [187515] (3 PDB entries)
    1. Domains for 2c7j:
      1. 1979079Domain d2c7ja_: 2c7j A: [241425]
        automated match to d2j96a_
        complexed with bla, cyc
      2. 1979080Domain d2c7jb_: 2c7j B: [241426]
        automated match to d2c7lb_
        complexed with bla, cyc
    2. Domains for 2c7l:
      1. 1979077Domain d2c7la_: 2c7l A: [163287]
        automated match to d1i7ya_
        complexed with bla, cyc
      2. 1979078Domain d2c7lb_: 2c7l B: [163288]
        automated match to d1i7yb_
        complexed with bla, cyc
    3. Domains for 2j96:
      1. 1979075Domain d2j96a_: 2j96 A: [165947]
        automated match to d1i7ya_
        complexed with pvn
      2. 1979076Domain d2j96b_: 2j96 B: [165948]
        automated match to d1i7ya_
        complexed with pvn
  8. 1979081Phormidium rubidum [TaxId:865859] [272704] (3 PDB entries)
    1. Domains for 4rmp:
      1. 1979082Domain d4rmpa1: 4rmp A:9-161 [272706]
        Other proteins in same PDB: d4rmpa2, d4rmpb2
        automated match to d3dbja_
        complexed with cyc
      2. 1979083Domain d4rmpb1: 4rmp B:1-155 [272705]
        Other proteins in same PDB: d4rmpa2, d4rmpb2
        automated match to d3dbjb_
        complexed with cyc
    2. Domains for 5aqd:
      1. 2275573Domain d5aqda_: 5aqd A: [318874]
        automated match to d1eyxa_
        complexed with gol, peb, so4
      2. 2275580Domain d5aqdf_: 5aqd F: [318881]
        automated match to d1eyxa_
        complexed with gol, peb, so4
      3. 2275581Domain d5aqdb_: 5aqd B: [318882]
        automated match to d1eyxa_
        complexed with gol, peb, so4
      4. 2275582Domain d5aqdm_: 5aqd M: [318883]
        automated match to d3v57b_
        complexed with gol, peb, so4
      5. 2275589Domain d5aqdg_: 5aqd G: [318890]
        automated match to d1eyxa_
        complexed with gol, peb, so4
      6. 2275591Domain d5aqdo_: 5aqd O: [318892]
        automated match to d3v57b_
        complexed with gol, peb, so4
      7. 2275592Domain d5aqdk_: 5aqd K: [318893]
        automated match to d1eyxa_
        complexed with gol, peb, so4
      8. 2275618Domain d5aqdl_: 5aqd L: [318919]
        automated match to d1eyxa_
        complexed with gol, peb, so4
      9. 2275625Domain d5aqdp_: 5aqd P: [318926]
        automated match to d3v57b_
        complexed with gol, peb, so4
      10. 2275650Domain d5aqdj_: 5aqd J: [318951]
        automated match to d1eyxa_
        complexed with gol, peb, so4
      11. 2275681Domain d5aqdv_: 5aqd V: [318982]
        automated match to d3v57b_
        complexed with gol, peb, so4
      12. 2275683Domain d5aqdx_: 5aqd X: [318984]
        automated match to d3v57b_
        complexed with gol, peb, so4
      13. 2275687Domain d5aqdq_: 5aqd Q: [318988]
        automated match to d3v57b_
        complexed with gol, peb, so4
      14. 2275697Domain d5aqdr_: 5aqd R: [318998]
        automated match to d3v57b_
        complexed with gol, peb, so4
      15. 2275698Domain d5aqdt_: 5aqd T: [318999]
        automated match to d3v57b_
        complexed with gol, peb, so4
      16. 2275712Domain d5aqde_: 5aqd E: [319013]
        automated match to d1eyxa_
        complexed with gol, peb, so4
      17. 2275716Domain d5aqdw_: 5aqd W: [319017]
        automated match to d3v57b_
        complexed with gol, peb, so4
      18. 2275720Domain d5aqdu_: 5aqd U: [319021]
        automated match to d3v57b_
        complexed with gol, peb, so4
      19. 2275762Domain d5aqdh_: 5aqd H: [319063]
        automated match to d1eyxa_
        complexed with gol, peb, so4
      20. 2275840Domain d5aqdd_: 5aqd D: [319141]
        automated match to d1eyxa_
        complexed with gol, peb, so4
      21. 2275893Domain d5aqdi_: 5aqd I: [319194]
        automated match to d1eyxa_
        complexed with gol, peb, so4
      22. 2275899Domain d5aqdc_: 5aqd C: [319200]
        automated match to d1eyxa_
        complexed with gol, peb, so4
      23. 2275913Domain d5aqdn_: 5aqd N: [319214]
        automated match to d3v57b_
        complexed with gol, peb, so4
      24. 2275920Domain d5aqds_: 5aqd S: [319221]
        automated match to d3v57b_
        complexed with gol, peb, so4
    3. Domains for 5fvb:
      1. 2275640Domain d5fvbh_: 5fvb H: [318941]
        automated match to d1eyxa_
        complexed with gol, peb
      2. 2275648Domain d5fvbi_: 5fvb I: [318949]
        automated match to d1eyxa_
        complexed with gol, peb
      3. 2275659Domain d5fvbu_: 5fvb U: [318960]
        automated match to d3v57b_
        complexed with gol, peb
      4. 2275668Domain d5fvbs_: 5fvb S: [318969]
        automated match to d3v57b_
        complexed with gol, peb
      5. 2275686Domain d5fvbp_: 5fvb P: [318987]
        automated match to d3v57b_
        complexed with gol, peb
      6. 2275688Domain d5fvbv_: 5fvb V: [318989]
        automated match to d3v57b_
        complexed with gol, peb
      7. 2275695Domain d5fvbo_: 5fvb O: [318996]
        automated match to d3v57b_
        complexed with gol, peb
      8. 2275696Domain d5fvbw_: 5fvb W: [318997]
        automated match to d3v57b_
        complexed with gol, peb
      9. 2275700Domain d5fvbt_: 5fvb T: [319001]
        automated match to d3v57b_
        complexed with gol, peb
      10. 2275701Domain d5fvbk_: 5fvb K: [319002]
        automated match to d1eyxa_
        complexed with gol, peb
      11. 2275721Domain d5fvbn_: 5fvb N: [319022]
        automated match to d3v57b_
        complexed with gol, peb
      12. 2275722Domain d5fvbf_: 5fvb F: [319023]
        automated match to d1eyxa_
        complexed with gol, peb
      13. 2275723Domain d5fvbb_: 5fvb B: [319024]
        automated match to d1eyxa_
        complexed with gol, peb
      14. 2275725Domain d5fvbe_: 5fvb E: [319026]
        automated match to d1eyxa_
        complexed with gol, peb
      15. 2275728Domain d5fvbl_: 5fvb L: [319029]
        automated match to d1eyxa_
        complexed with gol, peb
      16. 2275729Domain d5fvbc_: 5fvb C: [319030]
        automated match to d1eyxa_
        complexed with gol, peb
      17. 2275733Domain d5fvbg_: 5fvb G: [319034]
        automated match to d1eyxa_
        complexed with gol, peb
      18. 2275747Domain d5fvbx_: 5fvb X: [319048]
        automated match to d3v57b_
        complexed with gol, peb
      19. 2275755Domain d5fvbq_: 5fvb Q: [319056]
        automated match to d3v57b_
        complexed with gol, peb
      20. 2275785Domain d5fvbj_: 5fvb J: [319086]
        automated match to d1eyxa_
        complexed with gol, peb
      21. 2275801Domain d5fvbd_: 5fvb D: [319102]
        automated match to d1eyxa_
        complexed with gol, peb
      22. 2275808Domain d5fvba_: 5fvb A: [319109]
        automated match to d1eyxa_
        complexed with gol, peb
      23. 2275824Domain d5fvbm_: 5fvb M: [319125]
        automated match to d3v57b_
        complexed with gol, peb
      24. 2275850Domain d5fvbr_: 5fvb R: [319151]
        automated match to d3v57b_
        complexed with gol, peb
  9. 1979084Phormidium sp. [TaxId:1199] [255592] (1 PDB entry)
  10. 1979109Red alga (Porphyridium purpureum) [TaxId:35688] [194584] (2 PDB entries)
    1. Domains for 3v57:
      1. 1979110Domain d3v57a_: 3v57 A: [217667]
        automated match to d3v58c_
        complexed with peb, so4
      2. 1979111Domain d3v57b_: 3v57 B: [217668]
        automated match to d3v58b_
        complexed with peb, so4
      3. 1979112Domain d3v57c_: 3v57 C: [217669]
        automated match to d3v58c_
        complexed with peb, so4
      4. 1979113Domain d3v57d_: 3v57 D: [217670]
        automated match to d3v58b_
        complexed with peb, so4
    2. Domains for 3v58:
      1. 1979114Domain d3v58a_: 3v58 A: [201158]
        automated match to d3v58c_
        complexed with peb, so4
      2. 1979115Domain d3v58b_: 3v58 B: [194585]
        automated match to d1liab_
        complexed with peb, so4
      3. 1979116Domain d3v58c_: 3v58 C: [194586]
        automated match to d1eyxa_
        complexed with peb, so4
      4. 1979117Domain d3v58d_: 3v58 D: [201159]
        automated match to d3v58b_
        complexed with peb, so4
  11. 1979118Red algae (Galdieria sulphuraria) [TaxId:130081] [188789] (2 PDB entries)
    1. Domains for 3brp:
      1. 1979121Domain d3brpa_: 3brp A: [172801]
        automated match to d1phna_
        complexed with bla
      2. 1979122Domain d3brpb_: 3brp B: [172802]
        automated match to d1phnb_
        complexed with bla
    2. Domains for 3kvs:
      1. 1979119Domain d3kvsa_: 3kvs A: [179738]
        automated match to d1phna_
        complexed with bla
      2. 1979120Domain d3kvsb_: 3kvs B: [179739]
        automated match to d1phnb_
        complexed with bla
  12. 1979123Red algae (Gracilaria chilensis) [TaxId:2775] [187492] (2 PDB entries)
    1. Domains for 2bv8:
      1. 1979124Domain d2bv8a_: 2bv8 A: [163172]
        automated match to d1phna_
        complexed with cyc, peb
      2. 1979125Domain d2bv8b_: 2bv8 B: [163173]
        automated match to d1phnb_
        complexed with cyc, peb
      3. 1979126Domain d2bv8c_: 2bv8 C: [163174]
        automated match to d1phna_
        complexed with cyc, peb
      4. 1979127Domain d2bv8d_: 2bv8 D: [163175]
        automated match to d1phnb_
        complexed with cyc, peb
      5. 1979128Domain d2bv8e_: 2bv8 E: [163176]
        automated match to d1phna_
        complexed with cyc, peb
      6. 1979129Domain d2bv8f_: 2bv8 F: [163177]
        automated match to d1phnb_
        complexed with cyc, peb
      7. 1979130Domain d2bv8k_: 2bv8 K: [163178]
        automated match to d1phna_
        complexed with cyc, peb
      8. 1979131Domain d2bv8l_: 2bv8 L: [163179]
        automated match to d1phnb_
        complexed with cyc, peb
      9. 1979132Domain d2bv8m_: 2bv8 M: [163180]
        automated match to d1phna_
        complexed with cyc, peb
      10. 1979133Domain d2bv8n_: 2bv8 N: [163181]
        automated match to d1phnb_
        complexed with cyc, peb
      11. 1979134Domain d2bv8o_: 2bv8 O: [163182]
        automated match to d1phna_
        complexed with cyc, peb
      12. 1979135Domain d2bv8p_: 2bv8 P: [163183]
        automated match to d1phnb_
        complexed with cyc, peb
    2. Domains for 5tjf:
      1. 2291280Domain d5tjfa_: 5tjf A: [334581]
        automated match to d1kn1a_
        complexed with cl, cyc, na, peg
      2. 2291395Domain d5tjfb_: 5tjf B: [334696]
        automated match to d1kn1b_
        complexed with cl, cyc, na, peg
  13. 1979136Spirulina sp. [TaxId:1157] [255593] (1 PDB entry)
  14. 1979149Synechococcus elongatus [TaxId:1140] [193231] (2 PDB entries)
    1. Domains for 4f0u:
      1. 1979174Domain d4f0ua_: 4f0u A: [201981]
        automated match to d4f0uc_
        complexed with cyc
      2. 1979175Domain d4f0ub_: 4f0u B: [193925]
        automated match to d3dbjb_
        complexed with cyc
      3. 1979176Domain d4f0uc_: 4f0u C: [193920]
        automated match to d1kn1a_
        complexed with cyc
      4. 1979177Domain d4f0ud_: 4f0u D: [201982]
        automated match to d4f0uf_
        complexed with cyc
      5. 1979178Domain d4f0ue_: 4f0u E: [201983]
        automated match to d4f0uc_
        complexed with cyc
      6. 1979179Domain d4f0uf_: 4f0u F: [193922]
        automated match to d3dbjb_
        complexed with cyc
    2. Domains for 4h0m:
      1. 1979150Domain d4h0ma_: 4h0m A: [202323]
        automated match to d4h0me_
        complexed with cyc
      2. 1979151Domain d4h0mb_: 4h0m B: [202324]
        automated match to d4h0mp_
        complexed with cyc
      3. 1979152Domain d4h0mc_: 4h0m C: [202325]
        automated match to d4h0me_
        complexed with cyc
      4. 1979153Domain d4h0md_: 4h0m D: [202326]
        automated match to d4h0mp_
        complexed with cyc
      5. 1979154Domain d4h0me_: 4h0m E: [193232]
        automated match to d1ha7a_
        complexed with cyc
      6. 1979155Domain d4h0mf_: 4h0m F: [202327]
        automated match to d4h0mp_
        complexed with cyc
      7. 1979156Domain d4h0mg_: 4h0m G: [202328]
        automated match to d4h0me_
        complexed with cyc
      8. 1979157Domain d4h0mh_: 4h0m H: [202329]
        automated match to d4h0mp_
        complexed with cyc
      9. 1979158Domain d4h0mi_: 4h0m I: [202330]
        automated match to d4h0me_
        complexed with cyc
      10. 1979159Domain d4h0mj_: 4h0m J: [202331]
        automated match to d4h0mp_
        complexed with cyc
      11. 1979160Domain d4h0mk_: 4h0m K: [202332]
        automated match to d4h0me_
        complexed with cyc
      12. 1979161Domain d4h0ml_: 4h0m L: [202333]
        automated match to d4h0mp_
        complexed with cyc
      13. 1979162Domain d4h0mm_: 4h0m M: [202334]
        automated match to d4h0me_
        complexed with cyc
      14. 1979163Domain d4h0mn_: 4h0m N: [202335]
        automated match to d4h0mp_
        complexed with cyc
      15. 1979164Domain d4h0mo_: 4h0m O: [202336]
        automated match to d4h0me_
        complexed with cyc
      16. 1979165Domain d4h0mp_: 4h0m P: [193915]
        automated match to d1cpcb_
        complexed with cyc
      17. 1979166Domain d4h0mq_: 4h0m Q: [202337]
        automated match to d4h0me_
        complexed with cyc
      18. 1979167Domain d4h0mr_: 4h0m R: [193916]
        automated match to d1cpcb_
        complexed with cyc
      19. 1979168Domain d4h0ms_: 4h0m S: [202338]
        automated match to d4h0me_
        complexed with cyc
      20. 1979169Domain d4h0mt_: 4h0m T: [202339]
        automated match to d4h0mp_
        complexed with cyc
      21. 1979170Domain d4h0mu_: 4h0m U: [202340]
        automated match to d4h0me_
        complexed with cyc
      22. 1979171Domain d4h0mv_: 4h0m V: [202341]
        automated match to d4h0mp_
        complexed with cyc
      23. 1979172Domain d4h0mw_: 4h0m W: [202342]
        automated match to d4h0me_
        complexed with cyc
      24. 1979173Domain d4h0mx_: 4h0m X: [202343]
        automated match to d4h0mp_
        complexed with cyc
  15. 1979180Synechocystis sp. [TaxId:1111708] [193921] (2 PDB entries)
    1. Domains for 4f0t:
      1. 1979184Domain d4f0ta_: 4f0t A: [193924]
        automated match to d1ha7a_
        complexed with cyc
      2. 1979185Domain d4f0tb_: 4f0t B: [193923]
        automated match to d1gh0b_
        complexed with cyc
    2. Domains for 4po5:
      1. 1979181Domain d4po5b_: 4po5 B: [260744]
        Other proteins in same PDB: d4po5a1, d4po5a2, d4po5c1, d4po5c2, d4po5e1, d4po5e2
        automated match to d3dbjb_
        complexed with cyc, so4
      2. 1979182Domain d4po5d_: 4po5 D: [263554]
        Other proteins in same PDB: d4po5a1, d4po5a2, d4po5c1, d4po5c2, d4po5e1, d4po5e2
        automated match to d4po5b_
        complexed with cyc, so4
      3. 1979183Domain d4po5f_: 4po5 F: [260743]
        Other proteins in same PDB: d4po5a1, d4po5a2, d4po5c1, d4po5c2, d4po5e1, d4po5e2
        automated match to d3dbjb_
        complexed with cyc, so4
  16. 1979186Thermosynechococcus vulcanus [TaxId:32053] [188656] (1 PDB entry)
  17. 2280222Palmaria palmata [TaxId:2822] [323523] (1 PDB entry)
  18. 2287483Pseudanabaena sp. [TaxId:1357935] [330784] (1 PDB entry)

More info for Protein automated matches from a.1.1.3: Phycocyanin-like phycobilisome proteins

Timeline for Protein automated matches from a.1.1.3: Phycocyanin-like phycobilisome proteins: