Lineage for Protein: automated matches

  1. Root: SCOPe 2.05
  2. 1715731Class a: All alpha proteins [46456] (286 folds)
  3. 1733371Fold a.39: EF Hand-like [47472] (4 superfamilies)
    core: 4 helices; array of 2 hairpins, opened
  4. 1733372Superfamily a.39.1: EF-hand [47473] (12 families) (S)
    Duplication: consists of two EF-hand units: each is made of two helices connected with calcium-binding loop
  5. 1734668Family a.39.1.0: automated matches [191396] (1 protein)
    not a true family
  6. 1734669Protein automated matches [190513] (27 species)
    not a true protein

Species:

  1. 1734670African clawed frog (Xenopus laevis) [TaxId:8355] [254957] (1 PDB entry)
  2. 1734672Atlantic cod (Gadus morhua) [TaxId:8049] [259070] (1 PDB entry)
  3. 1734674Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] [255121] (2 PDB entries)
    1. Domains for 2doq:
      1. 1734679Domain d2doqa_: 2doq A: [241638]
        automated match to d2mysb_
        complexed with ca
      2. 1734680Domain d2doqb_: 2doq B: [241639]
        automated match to d2mysb_
        complexed with ca
      3. 1734681Domain d2doqc_: 2doq C: [241640]
        automated match to d2mysb_
        complexed with ca
    2. Domains for 2gv5:
      1. 1734675Domain d2gv5a_: 2gv5 A: [241983]
        automated match to d2mysb_
      2. 1734676Domain d2gv5b_: 2gv5 B: [241984]
        automated match to d2mysb_
      3. 1734677Domain d2gv5d_: 2gv5 D: [241985]
        automated match to d2mysb_
      4. 1734678Domain d2gv5e_: 2gv5 E: [241986]
        automated match to d2mysb_
  4. 1734682Chicken (Gallus gallus) [TaxId:9031] [225390] (1 PDB entry)
  5. 1734684Coccidioides immitis [TaxId:246410] [272847] (1 PDB entry)
  6. 1734686Dictyostelium discoideum [TaxId:44689] [268014] (1 PDB entry)
  7. 1734688Doryteuthis pealeii [TaxId:1051067] [260698] (4 PDB entries)
    1. Domains for 4ndb:
      1. 1734689Domain d4ndba_: 4ndb A: [260707]
        automated match to d2ccma_
        complexed with ca; mutant
      2. 1734690Domain d4ndbb_: 4ndb B: [263120]
        automated match to d2ccma_
        complexed with ca; mutant
    2. Domains for 4ndc:
      1. 1734691Domain d4ndca_: 4ndc A: [260708]
        automated match to d2ccma_
        complexed with ca; mutant
      2. 1734692Domain d4ndcb_: 4ndc B: [263121]
        automated match to d2ccma_
        complexed with ca; mutant
    3. Domains for 4ndd:
      1. 1734694Domain d4ndda_: 4ndd A: [263122]
        automated match to d2ccma_
        complexed with ca; mutant
      2. 1734695Domain d4nddb_: 4ndd B: [260699]
        automated match to d2ccma_
        complexed with ca; mutant
    4. Domain for 5f6t:
  8. 1734696Entamoeba (Entamoeba histolytica) [TaxId:5759] [255281] (1 PDB entry)
  9. 1734698Entamoeba histolytica [TaxId:294381] [255426] (1 PDB entry)
  10. 1734700Entamoeba histolytica [TaxId:885318] [268485] (1 PDB entry)
  11. 1734702Euplotes octocarinatus [TaxId:5937] [255282] (1 PDB entry)
  12. 1734704Fruit fly (Drosophila melanogaster) [TaxId:7227] [255450] (3 PDB entries)
    1. Domain for 2lmt:
    2. Domain for 2lmu:
    3. Domain for 2lmv:
  13. 1734708Green alga (Chlamydomonas reinhardtii) [TaxId:3055] [255034] (1 PDB entry)
  14. 1734710Haemopis marmorata [TaxId:38567] [254994] (2 PDB entries)
    1. Domain for 1yx7:
    2. Domain for 1yx8:
  15. 1734713Human (Homo sapiens) [TaxId:9606] [189519] (38 PDB entries)
    1. Domains for 1xk4:
      1. 1734717Domain d1xk4c_: 1xk4 C: [122057]
        Other proteins in same PDB: d1xk4a1, d1xk4b_, d1xk4e_, d1xk4f_, d1xk4i_, d1xk4j_
        automated match to d3nxaa_
        complexed with ca, cl, flc
      2. 1734718Domain d1xk4d_: 1xk4 D: [122058]
        Other proteins in same PDB: d1xk4a1, d1xk4b_, d1xk4e_, d1xk4f_, d1xk4i_, d1xk4j_
        automated match to d3nxaa_
        complexed with ca, cl, flc
      3. 1734719Domain d1xk4g_: 1xk4 G: [122061]
        Other proteins in same PDB: d1xk4a1, d1xk4b_, d1xk4e_, d1xk4f_, d1xk4i_, d1xk4j_
        automated match to d3nxaa_
        complexed with ca, cl, flc
      4. 1734720Domain d1xk4h_: 1xk4 H: [122062]
        Other proteins in same PDB: d1xk4a1, d1xk4b_, d1xk4e_, d1xk4f_, d1xk4i_, d1xk4j_
        automated match to d3nxaa_
        complexed with ca, cl, flc
      5. 1734721Domain d1xk4k_: 1xk4 K: [122065]
        Other proteins in same PDB: d1xk4a1, d1xk4b_, d1xk4e_, d1xk4f_, d1xk4i_, d1xk4j_
        automated match to d3nxaa_
        complexed with ca, cl, flc
      6. 1734722Domain d1xk4l_: 1xk4 L: [122066]
        Other proteins in same PDB: d1xk4a1, d1xk4b_, d1xk4e_, d1xk4f_, d1xk4i_, d1xk4j_
        automated match to d3nxaa_
        complexed with ca, cl, flc
    2. Domain for 1yur:
    3. Domains for 1yus:
      1. 1734787Domain d1yusa_: 1yus A: [124064]
        automated match to d2h2ka_
      2. 1734788Domain d1yusb_: 1yus B: [124065]
        automated match to d2h2ka_
    4. Domains for 1yut:
      1. 1734775Domain d1yuta_: 1yut A: [124066]
        automated match to d2h2ka_
        complexed with ca
      2. 1734776Domain d1yutb_: 1yut B: [124067]
        automated match to d2h2ka_
        complexed with ca
    5. Domains for 1yuu:
      1. 1734782Domain d1yuua_: 1yuu A: [124068]
        automated match to d2h2ka_
        complexed with ca
      2. 1734783Domain d1yuub_: 1yuu B: [124069]
        automated match to d2h2ka_
        complexed with ca
    6. Domain for 2b1u:
    7. Domain for 2e30:
    8. Domains for 2ggz:
      1. 1734742Domain d2ggza_: 2ggz A: [241932]
        automated match to d2r2ia_
        complexed with ca
      2. 1734743Domain d2ggzb_: 2ggz B: [241933]
        automated match to d2r2ia_
        complexed with ca
    9. Domains for 2h2k:
      1. 1734723Domain d2h2ka_: 2h2k A: [204505]
        automated match to d1irjb_
        complexed with ca
      2. 1734724Domain d2h2kb_: 2h2k B: [204506]
        automated match to d1irjb_
        complexed with ca
    10. Domain for 2k7c:
    11. Domain for 2k7d:
    12. Domains for 2k8m:
      1. 1734761Domain d2k8mb_: 2k8m B: [242416]
        Other proteins in same PDB: d2k8ma_, d2k8md_
        automated match to d2h2ka_
      2. 1734762Domain d2k8mc_: 2k8m C: [242417]
        Other proteins in same PDB: d2k8ma_, d2k8md_
        automated match to d2h2ka_
    13. Domains for 2kax:
      1. 1734769Domain d2kaxa_: 2kax A: [242442]
        automated match to d2y5ia_
      2. 1734770Domain d2kaxb_: 2kax B: [242443]
        automated match to d2y5ia_
    14. Domains for 2kay:
      1. 1734759Domain d2kaya_: 2kay A: [242444]
        automated match to d2y5ia_
        complexed with ca
      2. 1734760Domain d2kayb_: 2kay B: [242445]
        automated match to d2y5ia_
        complexed with ca
    15. Domain for 2khn:
    16. Domains for 2ki4:
      1. 1734780Domain d2ki4b_: 2ki4 B: [242521]
        Other proteins in same PDB: d2ki4a_, d2ki4d_
        automated match to d2h2ka_
      2. 1734781Domain d2ki4c_: 2ki4 C: [242522]
        Other proteins in same PDB: d2ki4a_, d2ki4d_
        automated match to d2h2ka_
    17. Domains for 2ki6:
      1. 1734778Domain d2ki6c_: 2ki6 C: [242526]
        Other proteins in same PDB: d2ki6a_, d2ki6b_, d2ki6e_, d2ki6f_
        automated match to d2h2ka_
      2. 1734779Domain d2ki6d_: 2ki6 D: [242527]
        Other proteins in same PDB: d2ki6a_, d2ki6b_, d2ki6e_, d2ki6f_
        automated match to d2h2ka_
    18. Domains for 2kot:
      1. 1734767Domain d2kota_: 2kot A: [242604]
        automated match to d2h2ka_
        complexed with anw
      2. 1734768Domain d2kotb_: 2kot B: [242605]
        automated match to d2h2ka_
        complexed with anw
    19. Domain for 2ksp:
    20. Domains for 2l50:
      1. 1734771Domain d2l50a_: 2l50 A: [242769]
        automated match to d3nxaa_
      2. 1734772Domain d2l50b_: 2l50 B: [242770]
        automated match to d3nxaa_
    21. Domains for 2l51:
      1. 1734765Domain d2l51a_: 2l51 A: [242771]
        automated match to d3nxaa_
        complexed with ca
      2. 1734766Domain d2l51b_: 2l51 B: [242772]
        automated match to d3nxaa_
        complexed with ca
    22. Domains for 2l5x:
      1. 1734773Domain d2l5xb_: 2l5x B: [242782]
        Other proteins in same PDB: d2l5xa_, d2l5xd_
        automated match to d2h2ka_
      2. 1734774Domain d2l5xc_: 2l5x C: [242783]
        Other proteins in same PDB: d2l5xa_, d2l5xd_
        automated match to d2h2ka_
    23. Domains for 2le9:
      1. 1734763Domain d2le9b_: 2le9 B: [242854]
        automated match to d2h2ka_
      2. 1734764Domain d2le9c_: 2le9 C: [242855]
        automated match to d2h2ka_
    24. Domains for 2m0r:
      1. 1734756Domain d2m0ra_: 2m0r A: [243064]
        automated match to d2h2kb_
      2. 1734757Domain d2m0rb_: 2m0r B: [243065]
        automated match to d2h2kb_
    25. Domains for 2m9g:
      1. 1734754Domain d2m9ga_: 2m9g A: [256416]
        automated match to d1mr8a_
      2. 1734755Domain d2m9gb_: 2m9g B: [262213]
        automated match to d2m9ga_
    26. Domain for 2zn8:
    27. Domains for 2zn9:
      1. 1734733Domain d2zn9a_: 2zn9 A: [207879]
        automated match to d1juoa_
        complexed with 12p, 2pe, ca
      2. 1734734Domain d2zn9b_: 2zn9 B: [207880]
        automated match to d1juoa_
        complexed with 12p, 2pe, ca
    28. Domain for 2znd:
    29. Domains for 2zrs:
      1. 1734744Domain d2zrsa_: 2zrs A: [244977]
        automated match to d3aaja_
        complexed with ca
      2. 1734745Domain d2zrsb_: 2zrs B: [244978]
        automated match to d3aaja_
        complexed with ca
      3. 1734746Domain d2zrsc_: 2zrs C: [244979]
        automated match to d3aaja_
        complexed with ca
      4. 1734747Domain d2zrsd_: 2zrs D: [244980]
        automated match to d3aaja_
        complexed with ca
      5. 1734748Domain d2zrse_: 2zrs E: [244981]
        automated match to d3aaja_
        complexed with ca
      6. 1734749Domain d2zrsf_: 2zrs F: [244982]
        automated match to d3aaja_
        complexed with ca
      7. 1734750Domain d2zrsg_: 2zrs G: [244983]
        automated match to d3aaja_
        complexed with ca
      8. 1734751Domain d2zrsh_: 2zrs H: [244984]
        automated match to d3aaja_
        complexed with ca
    30. Domains for 3aaj:
      1. 1734725Domain d3aaja_: 3aaj A: [208184]
        automated match to d1juoa_
        complexed with ca
      2. 1734726Domain d3aajb_: 3aaj B: [208185]
        automated match to d1juoa_
        complexed with ca
    31. Domain for 3aak:
    32. Domain for 3fia:
    33. Domains for 3nxa:
      1. 1734727Domain d3nxaa_: 3nxa A: [182604]
        automated match to d1cfpa_
      2. 1734728Domain d3nxab_: 3nxa B: [182605]
        automated match to d1cfpa_
      3. 1734729Domain d3nxac_: 3nxa C: [182606]
        automated match to d1cfpa_
      4. 1734730Domain d3nxad_: 3nxa D: [182607]
        automated match to d1cfpa_
    34. Domain for 3vgo:
    35. Domain for 3vrn:
    36. Domains for 3vrq:
      1. 1734731Domain d3vrqa1: 3vrq A:148-233 [250666]
        Other proteins in same PDB: d3vrqa2, d3vrqb2
        automated match to d3buxb1
        complexed with ca; mutant
      2. 1734732Domain d3vrqb1: 3vrq B:148-233 [250668]
        Other proteins in same PDB: d3vrqa2, d3vrqb2
        automated match to d3buxb1
        complexed with ca; mutant
    37. Domains for 4dir:
      1. 1734739Domain d4dira_: 4dir A: [219787]
        automated match to d2y5ie_
        complexed with ca
      2. 1734740Domain d4dirb_: 4dir B: [219788]
        automated match to d2y5ie_
        complexed with ca
    38. Domains for 4okh:
      1. 1734736Domain d4okha_: 4okh A: [257278]
        automated match to d1kfxs_
        complexed with ca, peu
      2. 1734737Domain d4okhb_: 4okh B: [263298]
        automated match to d4okha_
        complexed with ca, peu
      3. 1734738Domain d4okhc_: 4okh C: [258956]
        automated match to d1kfxs_
        complexed with ca, peu
  16. 1734790Lethocerus indicus [TaxId:212017] [255277] (2 PDB entries)
    1. Domain for 2jnf:
    2. Domain for 2k2a:
  17. 1734793Loligo pealeii [TaxId:6621] [187536] (1 PDB entry)
  18. 1734796Mouse (Mus musculus) [TaxId:10090] [255298] (2 PDB entries)
    1. Domain for 2jul:
    2. Domain for 2m28:
  19. 1734799Norway rat (Rattus norvegicus) [TaxId:10116] [238064] (2 PDB entries)
    1. Domains for 4ov2:
      1. 1734800Domain d4ov2a_: 4ov2 A: [238066]
        automated match to d1dgua_
        complexed with ca
      2. 1734801Domain d4ov2b_: 4ov2 B: [240726]
        automated match to d4ov2d_
        complexed with ca
      3. 1734802Domain d4ov2c_: 4ov2 C: [240727]
        automated match to d4ov2d_
        complexed with ca
      4. 1734803Domain d4ov2d_: 4ov2 D: [238065]
        automated match to d1dgua_
        complexed with ca
    2. Domains for 4yru:
      1. 1734804Domain d4yrua_: 4yru A: [271146]
        automated match to d1ikua_
        complexed with ca
      2. 1734805Domain d4yrub_: 4yru B: [271134]
        automated match to d1ikua_
        complexed with ca
      3. 1734806Domain d4yruc_: 4yru C: [271145]
        automated match to d1ikua_
        complexed with ca
      4. 1734807Domain d4yrud_: 4yru D: [271143]
        automated match to d1ikua_
        complexed with ca
  20. 1734808Placopecten magellanicus [TaxId:6577] [255532] (1 PDB entry)
  21. 1734811Plasmodium falciparum [TaxId:36329] [226712] (1 PDB entry)
  22. 1734813Plasmodium knowlesi [TaxId:5851] [234464] (1 PDB entry)
  23. 1734817Renilla muelleri [TaxId:37510] [187819] (2 PDB entries)
    1. Domain for 2hps:
    2. Domains for 2hq8:
      1. 1734819Domain d2hq8a_: 2hq8 A: [165206]
        automated match to d1q80a_
        complexed with ca
      2. 1734820Domain d2hq8b_: 2hq8 B: [165207]
        automated match to d1q80a_
        complexed with ca
  24. 1734821Slime mold (Physarum polycephalum) [TaxId:5791] [187468] (1 PDB entry)
  25. 1734823Soybean (Glycine max) [TaxId:3847] [255586] (2 PDB entries)
    1. Domain for 2kn2:
    2. Domain for 2rob:
  26. 1734826Thale cress (Arabidopsis thaliana) [TaxId:3702] [226776] (3 PDB entries)
    1. Domain for 1v1f:
    2. Domain for 1v1g:
    3. Domain for 2ehb:
  27. 1734830Todarodes pacificus [TaxId:6637] [189005] (2 PDB entries)
    1. Domains for 3i5f:
      1. 1734832Domain d3i5fb_: 3i5f B: [246718]
        automated match to d1br1b_
        complexed with adp, mg
      2. 1734833Domain d3i5fc_: 3i5f C: [246719]
        automated match to d1br1b_
        complexed with adp, mg
    2. Domain for 3i5g:

More info for Protein automated matches from a.39.1.0: automated matches

Timeline for Protein automated matches from a.39.1.0: automated matches: