Lineage for Protein: automated matches

  1. Root: SCOPe 2.03
  2. 1396887Class d: Alpha and beta proteins (a+b) [53931] (376 folds)
  3. 1437613Fold d.153: Ntn hydrolase-like [56234] (2 superfamilies)
    4 layers: alpha/beta/beta/alpha; has an unusual sheet-to-sheet packing
  4. 1437614Superfamily d.153.1: N-terminal nucleophile aminohydrolases (Ntn hydrolases) [56235] (8 families) (S)
    N-terminal residue provides two catalytic groups, nucleophile and proton donor
  5. 1439841Family d.153.1.0: automated matches [191393] (1 protein)
    not a true family
  6. 1439842Protein automated matches [190509] (8 species)
    not a true protein

Species:

  1. 1439843Bacillus sphaericus [TaxId:1421] [192699] (1 PDB entry)
  2. 1439851Bacillus subtilis [TaxId:1423] [188317] (1 PDB entry)
  3. 1439854Bacteroides thetaiotaomicron [TaxId:818] [225684] (1 PDB entry)
  4. 1439856Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] [226129] (3 PDB entries)
    1. Domains for 3mg6:
      1. 1439857Domain d3mg6d_: 3mg6 D: [199838]
        Other proteins in same PDB: d3mg61_, d3mg62_, d3mg6a_, d3mg6b_, d3mg6c_, d3mg6e_, d3mg6f_, d3mg6g_, d3mg6h_, d3mg6i_, d3mg6j_, d3mg6k_, d3mg6l_, d3mg6m_, d3mg6n_, d3mg6o_, d3mg6p_, d3mg6q_, d3mg6s_, d3mg6t_, d3mg6u_, d3mg6v_, d3mg6w_, d3mg6x_, d3mg6y_, d3mg6z_
        automated match to d4eu2f_
        complexed with lzt, mes, mg
      2. 1439858Domain d3mg6r_: 3mg6 R: [199840]
        Other proteins in same PDB: d3mg61_, d3mg62_, d3mg6a_, d3mg6b_, d3mg6c_, d3mg6e_, d3mg6f_, d3mg6g_, d3mg6h_, d3mg6i_, d3mg6j_, d3mg6k_, d3mg6l_, d3mg6m_, d3mg6n_, d3mg6o_, d3mg6p_, d3mg6q_, d3mg6s_, d3mg6t_, d3mg6u_, d3mg6v_, d3mg6w_, d3mg6x_, d3mg6y_, d3mg6z_
        automated match to d4eu2f_
        complexed with lzt, mes, mg
    2. Domains for 3mg7:
      1. 1439861Domain d3mg7d_: 3mg7 D: [199842]
        Other proteins in same PDB: d3mg71_, d3mg72_, d3mg7a_, d3mg7b_, d3mg7c_, d3mg7e_, d3mg7f_, d3mg7g_, d3mg7h_, d3mg7i_, d3mg7j_, d3mg7k_, d3mg7l_, d3mg7m_, d3mg7n_, d3mg7o_, d3mg7p_, d3mg7q_, d3mg7s_, d3mg7t_, d3mg7u_, d3mg7v_, d3mg7w_, d3mg7x_, d3mg7y_, d3mg7z_
        automated match to d4eu2f_
        complexed with l2t, mes, mg
      2. 1439862Domain d3mg7r_: 3mg7 R: [199844]
        Other proteins in same PDB: d3mg71_, d3mg72_, d3mg7a_, d3mg7b_, d3mg7c_, d3mg7e_, d3mg7f_, d3mg7g_, d3mg7h_, d3mg7i_, d3mg7j_, d3mg7k_, d3mg7l_, d3mg7m_, d3mg7n_, d3mg7o_, d3mg7p_, d3mg7q_, d3mg7s_, d3mg7t_, d3mg7u_, d3mg7v_, d3mg7w_, d3mg7x_, d3mg7y_, d3mg7z_
        automated match to d4eu2f_
        complexed with l2t, mes, mg
    3. Domains for 3mg8:
      1. 1439859Domain d3mg8d_: 3mg8 D: [199846]
        Other proteins in same PDB: d3mg81_, d3mg82_, d3mg8a_, d3mg8b_, d3mg8c_, d3mg8e_, d3mg8f_, d3mg8g_, d3mg8h_, d3mg8i_, d3mg8j_, d3mg8k_, d3mg8l_, d3mg8m_, d3mg8n_, d3mg8o_, d3mg8p_, d3mg8q_, d3mg8s_, d3mg8t_, d3mg8u_, d3mg8v_, d3mg8w_, d3mg8x_, d3mg8y_, d3mg8z_
        automated match to d4eu2f_
        complexed with l3t, mes, mg
      2. 1439860Domain d3mg8r_: 3mg8 R: [199848]
        Other proteins in same PDB: d3mg81_, d3mg82_, d3mg8a_, d3mg8b_, d3mg8c_, d3mg8e_, d3mg8f_, d3mg8g_, d3mg8h_, d3mg8i_, d3mg8j_, d3mg8k_, d3mg8l_, d3mg8m_, d3mg8n_, d3mg8o_, d3mg8p_, d3mg8q_, d3mg8s_, d3mg8t_, d3mg8u_, d3mg8v_, d3mg8w_, d3mg8x_, d3mg8y_, d3mg8z_
        automated match to d4eu2f_
        complexed with l3t, mes, mg
  5. 1439863Clostridium perfringens [TaxId:1502] [188628] (5 PDB entries)
    1. Domain for 2bjf:
    2. Domains for 2bjg:
      1. 1439867Domain d2bjga_: 2bjg A: [163101]
        automated match to d3pvaa_
        complexed with edo
      2. 1439868Domain d2bjgb_: 2bjg B: [163102]
        automated match to d3pvaa_
        complexed with edo
    3. Domains for 2rf8:
      1. 1439869Domain d2rf8a_: 2rf8 A: [168075]
        automated match to d3pvaa_
        complexed with gol; mutant
      2. 1439870Domain d2rf8b_: 2rf8 B: [168076]
        automated match to d3pvaa_
        complexed with gol; mutant
    4. Domain for 2rg2:
    5. Domain for 2rlc:
  6. 1439871Escherichia coli [TaxId:562] [233107] (1 PDB entry)
  7. 1439875Mouse (Mus musculus) [TaxId:10090] [195930] (2 PDB entries)
    1. Domains for 3unb:
      1. 1439883Domain d3unbe_: 3unb E: [201038]
        Other proteins in same PDB: d3unb1_, d3unb2_, d3unb3_, d3unb4_, d3unba_, d3unbb_, d3unbc_, d3unbd_, d3unbf_, d3unbg_, d3unbh_, d3unbi_, d3unbj_, d3unbk_, d3unbl_, d3unbm_, d3unbn_, d3unbo_, d3unbp_, d3unbq_, d3unbr_, d3unbt_, d3unbu_, d3unbv_, d3unbw_, d3unbx_, d3unby_, d3unbz_
        automated match to d4g4se_
        complexed with 04c
      2. 1439884Domain d3unbs_: 3unb S: [201050]
        Other proteins in same PDB: d3unb1_, d3unb2_, d3unb3_, d3unb4_, d3unba_, d3unbb_, d3unbc_, d3unbd_, d3unbf_, d3unbg_, d3unbh_, d3unbi_, d3unbj_, d3unbk_, d3unbl_, d3unbm_, d3unbn_, d3unbo_, d3unbp_, d3unbq_, d3unbr_, d3unbt_, d3unbu_, d3unbv_, d3unbw_, d3unbx_, d3unby_, d3unbz_
        automated match to d4g4se_
        complexed with 04c
    2. Domains for 3unf:
      1. 1439876Domain d3unfb_: 3unf b: [195931]
        Other proteins in same PDB: d3unfa_, d3unfd_, d3unff_, d3unfg_, d3unfh_, d3unfi_, d3unfj_, d3unfk_, d3unfl_, d3unfm_, d3unfo_, d3unfr_, d3unft_, d3unfu_, d3unfv_, d3unfw_, d3unfx_, d3unfy_, d3unfz_
        automated match to d1iruh_
        complexed with 04c, cl, iod, k
      2. 1439877Domain d3unfc_: 3unf C: [201052]
        Other proteins in same PDB: d3unfa_, d3unfd_, d3unff_, d3unfg_, d3unfh_, d3unfi_, d3unfj_, d3unfk_, d3unfl_, d3unfm_, d3unfo_, d3unfr_, d3unft_, d3unfu_, d3unfv_, d3unfw_, d3unfx_, d3unfy_, d3unfz_
        automated match to d1g0ue_
        complexed with 04c, cl, iod, k
      3. 1439878Domain d3unfe_: 3unf E: [201054]
        Other proteins in same PDB: d3unfa_, d3unfd_, d3unff_, d3unfg_, d3unfh_, d3unfi_, d3unfj_, d3unfk_, d3unfl_, d3unfm_, d3unfo_, d3unfr_, d3unft_, d3unfu_, d3unfv_, d3unfw_, d3unfx_, d3unfy_, d3unfz_
        automated match to d4g4se_
        complexed with 04c, cl, iod, k
      4. 1439879Domain d3unfn_: 3unf N: [201063]
        Other proteins in same PDB: d3unfa_, d3unfd_, d3unff_, d3unfg_, d3unfh_, d3unfi_, d3unfj_, d3unfk_, d3unfl_, d3unfm_, d3unfo_, d3unfr_, d3unft_, d3unfu_, d3unfv_, d3unfw_, d3unfx_, d3unfy_, d3unfz_
        automated match to d3unfb_
        complexed with 04c, cl, iod, k
      5. 1439880Domain d3unfp_: 3unf P: [201065]
        Other proteins in same PDB: d3unfa_, d3unfd_, d3unff_, d3unfg_, d3unfh_, d3unfi_, d3unfj_, d3unfk_, d3unfl_, d3unfm_, d3unfo_, d3unfr_, d3unft_, d3unfu_, d3unfv_, d3unfw_, d3unfx_, d3unfy_, d3unfz_
        automated match to d1z7qc1
        complexed with 04c, cl, iod, k
      6. 1439881Domain d3unfq_: 3unf Q: [201066]
        Other proteins in same PDB: d3unfa_, d3unfd_, d3unff_, d3unfg_, d3unfh_, d3unfi_, d3unfj_, d3unfk_, d3unfl_, d3unfm_, d3unfo_, d3unfr_, d3unft_, d3unfu_, d3unfv_, d3unfw_, d3unfx_, d3unfy_, d3unfz_
        automated match to d1g0ue_
        complexed with 04c, cl, iod, k
      7. 1439882Domain d3unfs_: 3unf S: [201068]
        Other proteins in same PDB: d3unfa_, d3unfd_, d3unff_, d3unfg_, d3unfh_, d3unfi_, d3unfj_, d3unfk_, d3unfl_, d3unfm_, d3unfo_, d3unfr_, d3unft_, d3unfu_, d3unfv_, d3unfw_, d3unfx_, d3unfy_, d3unfz_
        automated match to d4g4se_
        complexed with 04c, cl, iod, k
  8. 1439885Trypanosoma brucei [TaxId:999953] [224942] (2 PDB entries)
    1. Domains for 4hnz:
      1. 1439886Domain d4hnza_: 4hnz A: [222687]
        automated match to d1g3ka_
        complexed with mg
      2. 1439887Domain d4hnzb_: 4hnz B: [222688]
        automated match to d1g3ka_
        complexed with mg
      3. 1439888Domain d4hnzc_: 4hnz C: [222689]
        automated match to d1g3ka_
        complexed with mg
      4. 1439889Domain d4hnzd_: 4hnz D: [222690]
        automated match to d1g3ka_
        complexed with mg
      5. 1439890Domain d4hnze_: 4hnz E: [222691]
        automated match to d1g3ka_
        complexed with mg
      6. 1439891Domain d4hnzf_: 4hnz F: [222692]
        automated match to d1g3ka_
        complexed with mg
      7. 1439892Domain d4hnzg_: 4hnz G: [222693]
        automated match to d1g3ka_
        complexed with mg
      8. 1439893Domain d4hnzh_: 4hnz H: [222694]
        automated match to d1g3ka_
        complexed with mg
      9. 1439894Domain d4hnzi_: 4hnz I: [222695]
        automated match to d1g3ka_
        complexed with mg
      10. 1439895Domain d4hnzj_: 4hnz J: [222696]
        automated match to d1g3ka_
        complexed with mg
      11. 1439896Domain d4hnzk_: 4hnz K: [222697]
        automated match to d1g3ka_
        complexed with mg
      12. 1439897Domain d4hnzl_: 4hnz L: [222698]
        automated match to d1g3ka_
        complexed with mg
    2. Domains for 4ho7:
      1. 1439898Domain d4ho7a_: 4ho7 A: [222699]
        automated match to d1g3ka_
        complexed with mg
      2. 1439899Domain d4ho7b_: 4ho7 B: [222700]
        automated match to d1g3ka_
        complexed with mg
      3. 1439900Domain d4ho7c_: 4ho7 C: [222701]
        automated match to d1g3ka_
        complexed with mg

More info for Protein automated matches from d.153.1.0: automated matches

Timeline for Protein automated matches from d.153.1.0: automated matches: