SCOPe Funding Alert: SCOPe support from the NIH ended in April 2016. John-Marc Chandonia is the primary maintainer and has continued to develop SCOPe using vacation time. Three proposals to the NIH for continued funding have been unsuccessful. If our current NIH proposal is not funded, SCOPe will shut down permanently in Summer 2017 as Dr. Chandonia will need to seek a new position.

Lineage for Protein: automated matches

  1. Root: SCOPe 2.06
  2. 2017114Class b: All beta proteins [48724] (177 folds)
  3. 2033752Fold b.2: Common fold of diphtheria toxin/transcription factors/cytochrome f [49379] (9 superfamilies)
    sandwich; 9 strands in 2 sheet; greek-key; subclass of immunoglobin-like fold
  4. 2033932Superfamily b.2.3: Bacterial adhesins [49401] (7 families) (S)
  5. 2034222Family b.2.3.0: automated matches [191391] (1 protein)
    not a true family
  6. 2034223Protein automated matches [190503] (4 species)
    not a true protein

Species:

  1. 2034224Bacillus cereus [TaxId:226900] [311336] (1 PDB entry)
  2. 2034227Enterococcus faecalis [TaxId:1351] [188324] (1 PDB entry)
  3. 2034229Escherichia coli [TaxId:562] [187451] (5 PDB entries)
    1. Domains for 2bcm:
      1. 2034230Domain d2bcma_: 2bcm A: [163041]
        automated match to d1rxla_
      2. 2034231Domain d2bcmb_: 2bcm B: [163042]
        automated match to d1rxla_
      3. 2034232Domain d2bcmc_: 2bcm C: [163043]
        automated match to d1rxla_
    2. Domains for 4or1:
      1. 2034241Domain d4or1a1: 4or1 A:1-143 [268529]
        Other proteins in same PDB: d4or1a2, d4or1b2
        automated match to d4phxc_
        complexed with act, so4
      2. 2034242Domain d4or1b1: 4or1 B:1-143 [300088]
        Other proteins in same PDB: d4or1a2, d4or1b2
        automated match to d4or1a_
        complexed with act, so4
    3. Domains for 4phx:
      1. 2034233Domain d4phxa1: 4phx A:1-120 [263487]
        Other proteins in same PDB: d4phxa2, d4phxb2, d4phxc2, d4phxd2, d4phxe2, d4phxf2, d4phxg2, d4phxh2
        automated match to d4phxc_
      2. 2034234Domain d4phxb1: 4phx B:1-120 [263488]
        Other proteins in same PDB: d4phxa2, d4phxb2, d4phxc2, d4phxd2, d4phxe2, d4phxf2, d4phxg2, d4phxh2
        automated match to d4phxc_
      3. 2034235Domain d4phxc1: 4phx C:1-119 [259923]
        Other proteins in same PDB: d4phxa2, d4phxb2, d4phxc2, d4phxd2, d4phxe2, d4phxf2, d4phxg2, d4phxh2
        automated match to d2axwb_
      4. 2034236Domain d4phxd1: 4phx D:1-119 [263489]
        Other proteins in same PDB: d4phxa2, d4phxb2, d4phxc2, d4phxd2, d4phxe2, d4phxf2, d4phxg2, d4phxh2
        automated match to d4phxc_
      5. 2034237Domain d4phxe1: 4phx E:1-123 [263490]
        Other proteins in same PDB: d4phxa2, d4phxb2, d4phxc2, d4phxd2, d4phxe2, d4phxf2, d4phxg2, d4phxh2
        automated match to d4phxc_
      6. 2034238Domain d4phxf1: 4phx F:1-120 [261547]
        Other proteins in same PDB: d4phxa2, d4phxb2, d4phxc2, d4phxd2, d4phxe2, d4phxf2, d4phxg2, d4phxh2
        automated match to d2axwb_
      7. 2034239Domain d4phxg1: 4phx G:1-120 [263491]
        Other proteins in same PDB: d4phxa2, d4phxb2, d4phxc2, d4phxd2, d4phxe2, d4phxf2, d4phxg2, d4phxh2
        automated match to d4phxc_
      8. 2034240Domain d4phxh1: 4phx H:1-131 [263492]
        Other proteins in same PDB: d4phxa2, d4phxb2, d4phxc2, d4phxd2, d4phxe2, d4phxf2, d4phxg2, d4phxh2
        automated match to d4phxc_
    4. Domains for 5lne:
      1. 2280408Domain d5lnea_: 5lne A: [323709]
        Other proteins in same PDB: d5lneb2
        automated match to d4csta_
        complexed with a2g, gal, ni
      2. 2280412Domain d5lneb1: 5lne B:1-158 [323713]
        Other proteins in same PDB: d5lneb2
        automated match to d4csta_
        complexed with a2g, gal, ni
    5. Domains for 5lng:
      1. 2280404Domain d5lngc_: 5lng C: [323705]
        automated match to d4csta_
        complexed with so4
      2. 2280421Domain d5lnga_: 5lng A: [323722]
        automated match to d4csta_
        complexed with so4
      3. 2280423Domain d5lngd_: 5lng D: [323724]
        automated match to d4csta_
        complexed with so4
      4. 2280435Domain d5lngb_: 5lng B: [323736]
        automated match to d4csta_
        complexed with so4
  4. 2288350Staphylococcus aureus [TaxId:282459] [331651] (1 PDB entry)

More info for Protein automated matches from b.2.3.0: automated matches

Timeline for Protein automated matches from b.2.3.0: automated matches: