SCOPe 2.07: Protein: automated matches

Lineage for Protein: automated matches

Root: SCOPe 2.07
Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

Fold c.72: Ribokinase-like [53612] (3 superfamilies)
core: 3 layers: a/b/a; mixed beta-sheet of 8 strands, order 21345678, strand 7 is antiparallel to the rest
potential superfamily: members of this fold have similar functions but different ATP-binding sites

Superfamily c.72.1: Ribokinase-like [53613] (6 families)
has extra strand located between strands 2 and 3
Family c.72.1.5: PfkB-like kinase [82515] (3 proteins)
includes a variety of carbohydrate and pyrimidine kinases
Protein automated matches [190479] (4 species)
not a true protein

Species:

Burkholderia xenovorans [TaxId:266265] [326107] (1 PDB entry)
- Domain for 5trw:
  - Domain d5trwa_: 5trw A: [326108]
    automated match to d1td2a_
    complexed with cl, edo, nhe, no3, so4
Human (Homo sapiens) [TaxId:9606] [187406] (10 PDB entries)
1. Domains for 2ajp:
  1. Domain d2ajpa1: 2ajp A:6-312 [162822]
    Other proteins in same PDB: d2ajpa2, d2ajpb2
    automated match to d1lhpa_
    complexed with anp, mg, unx
  2. Domain d2ajpb1: 2ajp B:6-312 [162823]
    Other proteins in same PDB: d2ajpa2, d2ajpb2
    automated match to d1lhpa_
    complexed with anp, mg, unx
2. Domains for 2f7k:
  1. Domain d2f7ka1: 2f7k A:-4-312 [164272]
    Other proteins in same PDB: d2f7ka2, d2f7kb2
    automated match to d1rfua_
  2. Domain d2f7kb1: 2f7k B:-4-312 [164273]
    Other proteins in same PDB: d2f7ka2, d2f7kb2
    automated match to d1rfua_
3. Domains for 2yxt:
  1. Domain d2yxta_: 2yxt A: [170917]
    automated match to d1rfua_
    complexed with mpd, na, po4
  2. Domain d2yxtb_: 2yxt B: [170918]
    automated match to d1rfua_
    complexed with mpd, na, po4
4. Domains for 2yxu:
  1. Domain d2yxua_: 2yxu A: [170919]
    automated match to d1rfua_
    complexed with atp, mg, mpd, na, po4
  2. Domain d2yxub_: 2yxu B: [170920]
    automated match to d1rfua_
    complexed with atp, mg, mpd, na, po4
5. Domains for 3fhx:
  1. Domain d3fhxa_: 3fhx A: [175794]
    automated match to d1rfua_
    complexed with atp, mg, mpd, na, plp, pxl, so4; mutant
  2. Domain d3fhxb_: 3fhx B: [175795]
    automated match to d1rfua_
    complexed with atp, mg, mpd, na, plp, pxl, so4; mutant
6. Domains for 3fhy:
  1. Domain d3fhya_: 3fhy A: [175796]
    automated match to d1rfua_
    complexed with atp, mg, mpd, na, so4; mutant
  2. Domain d3fhyb_: 3fhy B: [175797]
    automated match to d1rfua_
    complexed with atp, mg, mpd, na, so4; mutant
7. Domains for 3kbi:
  1. Domain d3kbia_: 3kbi A: [305691]
    automated match to d4eoha_
    complexed with mpd, na, so4, tep
  2. Domain d3kbib_: 3kbi B: [305692]
    automated match to d4eoha_
    complexed with mpd, na, so4, tep
8. Domains for 3keu:
  1. Domain d3keua_: 3keu A: [179315]
    automated match to d1rfua_
    complexed with atp, mg, mpd, na, plp, so4
  2. Domain d3keub_: 3keu B: [179316]
    automated match to d1rfua_
    complexed with atp, mg, mpd, na, plp, so4
9. Domains for 4en4:
  1. Domain d4en4a_: 4en4 A: [220677]
    automated match to d2yxua_
    complexed with atp, gt0, gt1, mg, mpd, na, so4
  2. Domain d4en4b_: 4en4 B: [220678]
    automated match to d2yxua_
    complexed with atp, gt0, gt1, mg, mpd, na, so4
10. Domains for 4eoh:
  1. Domain d4eoha_: 4eoh A: [192393]
    complexed with mpd, na, so4, tep
  2. Domain d4eohb_: 4eoh B: [192394]
    complexed with mpd, na, so4, tep
Mus musculus [TaxId:10090] [404147] (3 PDB entries)
1. Domains for 6yjz:
  1. Domain d6yjza_: 6yjz A: [404152]
    automated match to d1rfua_
    complexed with edo, gol, pg4
  2. Domain d6yjzb_: 6yjz B: [404193]
    automated match to d1rfua_
    complexed with edo, gol, pg4
  3. Domain d6yjzc_: 6yjz C: [404149]
    automated match to d1rfua_
    complexed with edo, gol, pg4
  4. Domain d6yjzd_: 6yjz D: [404148]
    automated match to d1rfua_
    complexed with edo, gol, pg4
2. Domains for 6yk0:
  1. Domain d6yk0a_: 6yk0 A: [404221]
    automated match to d1rfua_
    complexed with ags, edo, gol, pg4
  2. Domain d6yk0b_: 6yk0 B: [404267]
    automated match to d1rfua_
    complexed with ags, edo, gol, pg4
  3. Domain d6yk0c_: 6yk0 C: [404174]
    automated match to d1rfua_
    complexed with ags, edo, gol, pg4
  4. Domain d6yk0d_: 6yk0 D: [404205]
    automated match to d1rfua_
    complexed with ags, edo, gol, pg4
3. Domains for 6yk1:
  1. Domain d6yk1a_: 6yk1 A: [404247]
    automated match to d1rfua_
    complexed with ags, d95, edo, gol, pg4
  2. Domain d6yk1b_: 6yk1 B: [404188]
    automated match to d1rfua_
    complexed with ags, d95, edo, gol, pg4
  3. Domain d6yk1c_: 6yk1 C: [404199]
    automated match to d1rfua_
    complexed with ags, d95, edo, gol, pg4
  4. Domain d6yk1d_: 6yk1 D: [404195]
    automated match to d1rfua_
    complexed with ags, d95, edo, gol, pg4
Yersinia pestis [TaxId:214092] [189669] (1 PDB entry)
- Domains for 3pzs:
  1. Domain d3pzsa_: 3pzs A: [184096]
    automated match to d1td2a_
    complexed with bme, na, so4
  2. Domain d3pzsb_: 3pzs B: [184097]
    automated match to d1td2a_
    complexed with bme, na, so4

More info for Protein automated matches from c.72.1.5: PfkB-like kinase

Timeline for Protein automated matches from c.72.1.5: PfkB-like kinase:

Protein automated matches from c.72.1.5: PfkB-like kinase first appeared in SCOPe 2.01
Protein automated matches from c.72.1.5: PfkB-like kinase appears in SCOPe 2.06
Protein automated matches from c.72.1.5: PfkB-like kinase appears in the current release, SCOPe 2.08