Lineage for Protein: automated matches

  1. Root: SCOPe 2.07
  2. 2494617Class d: Alpha and beta proteins (a+b) [53931] (388 folds)
  3. 2536167Fold d.117: Thymidylate synthase/dCMP hydroxymethylase [55830] (1 superfamily)
    contains large mixed beta-sheet
  4. 2536168Superfamily d.117.1: Thymidylate synthase/dCMP hydroxymethylase [55831] (2 families) (S)
    automatically mapped to Pfam PF00303
  5. 2536169Family d.117.1.1: Thymidylate synthase/dCMP hydroxymethylase [55832] (4 protein domains)
  6. 2536512Protein automated matches [190469] (15 species)
    not a true protein

Species:

  1. 2536513Corynebacterium glutamicum [TaxId:196627] [227854] (2 PDB entries)
    1. Domains for 4h0r:
      1. 2536518Domain d4h0ra_: 4h0r A: [227855]
        automated match to d4knza_
      2. 2536519Domain d4h0rb_: 4h0r B: [234588]
        automated match to d4h0ra_
    2. Domains for 4h0u:
      1. 2536514Domain d4h0ua_: 4h0u A: [234590]
        automated match to d4h0ra_
        complexed with ump
      2. 2536515Domain d4h0ub_: 4h0u B: [234589]
        automated match to d4h0ra_
        complexed with ump
      3. 2536516Domain d4h0uc_: 4h0u C: [234599]
        automated match to d4h0ra_
        complexed with ump
      4. 2536517Domain d4h0ud_: 4h0u D: [227856]
        automated match to d4knza_
        complexed with ump
  2. 2536520Cryptosporidium hominis [TaxId:237895] [232024] (3 PDB entries)
    1. Domains for 2oip:
      1. 2536528Domain d2oipa2: 2oip A:181-521 [148785]
        Other proteins in same PDB: d2oipa1, d2oipb1, d2oipc1, d2oipd1, d2oipe1
        automated match to d1qzfa2
        complexed with cb3, mtx, ndp, ump; mutant
      2. 2536529Domain d2oipb2: 2oip B:181-521 [148787]
        Other proteins in same PDB: d2oipa1, d2oipb1, d2oipc1, d2oipd1, d2oipe1
        automated match to d1qzfa2
        complexed with cb3, mtx, ndp, ump; mutant
      3. 2536530Domain d2oipc2: 2oip C:186-521 [148789]
        Other proteins in same PDB: d2oipa1, d2oipb1, d2oipc1, d2oipd1, d2oipe1
        automated match to d1qzfa2
        complexed with cb3, mtx, ndp, ump; mutant
      4. 2536531Domain d2oipd2: 2oip D:181-521 [148791]
        Other proteins in same PDB: d2oipa1, d2oipb1, d2oipc1, d2oipd1, d2oipe1
        automated match to d1qzfa2
        complexed with cb3, mtx, ndp, ump; mutant
      5. 2536532Domain d2oipe2: 2oip E:181-521 [148793]
        Other proteins in same PDB: d2oipa1, d2oipb1, d2oipc1, d2oipd1, d2oipe1
        automated match to d1qzfa2
        complexed with cb3, mtx, ndp, ump; mutant
    2. Domains for 3dl5:
      1. 2536521Domain d3dl5b2: 3dl5 B:181-521 [232027]
        Other proteins in same PDB: d3dl5a1, d3dl5b1, d3dl5c1, d3dl5d1, d3dl5e1
        automated match to d1qzfa2
        complexed with cb3, dhf, ndp, ump; mutant
      2. 2536522Domain d3dl5c2: 3dl5 C:181-521 [232031]
        Other proteins in same PDB: d3dl5a1, d3dl5b1, d3dl5c1, d3dl5d1, d3dl5e1
        automated match to d1qzfa2
        complexed with cb3, dhf, ndp, ump; mutant
      3. 2536523Domain d3dl5d2: 3dl5 D:193-521 [232026]
        Other proteins in same PDB: d3dl5a1, d3dl5b1, d3dl5c1, d3dl5d1, d3dl5e1
        automated match to d1qzfa2
        complexed with cb3, dhf, ndp, ump; mutant
    3. Domains for 3hj3:
      1. 2536524Domain d3hj3a2: 3hj3 A:192-521 [232479]
        Other proteins in same PDB: d3hj3a1, d3hj3b1, d3hj3c1, d3hj3d1
        automated match to d1qzfa2
        complexed with cb3, mtx, ndp, ump; mutant
      2. 2536525Domain d3hj3b2: 3hj3 B:192-521 [236020]
        Other proteins in same PDB: d3hj3a1, d3hj3b1, d3hj3c1, d3hj3d1
        automated match to d3hj3a2
        complexed with cb3, mtx, ndp, ump; mutant
      3. 2536526Domain d3hj3c2: 3hj3 C:192-521 [236019]
        Other proteins in same PDB: d3hj3a1, d3hj3b1, d3hj3c1, d3hj3d1
        automated match to d3hj3a2
        complexed with cb3, mtx, ndp, ump; mutant
      4. 2536527Domain d3hj3d2: 3hj3 D:193-521 [236023]
        Other proteins in same PDB: d3hj3a1, d3hj3b1, d3hj3c1, d3hj3d1
        automated match to d3hj3a2
        complexed with cb3, mtx, ndp, ump; mutant
  3. 2536533Elizabethkingia anophelis [TaxId:1338011] [339475] (1 PDB entry)
  4. 2536537Encephalitozoon cuniculi [TaxId:284813] [189107] (1 PDB entry)
  5. 2536539Enterococcus faecalis [TaxId:1351] [194752] (3 PDB entries)
    1. Domains for 3uwl:
      1. 2536540Domain d3uwla_: 3uwl A: [194756]
        automated match to d1tsla_
        complexed with edo, foz, so4
      2. 2536541Domain d3uwlb_: 3uwl B: [194753]
        automated match to d1tsla_
        complexed with edo, foz, so4
      3. 2536542Domain d3uwlc_: 3uwl C: [194754]
        automated match to d1tsla_
        complexed with edo, foz, so4
      4. 2536543Domain d3uwld_: 3uwl D: [194755]
        automated match to d1tsla_
        complexed with edo, foz, so4
    2. Domains for 4o7u:
      1. 2536544Domain d4o7ua_: 4o7u A: [268461]
        automated match to d3uwlb_
        complexed with edo, so4, ss7, thf
      2. 2536545Domain d4o7ub_: 4o7u B: [268460]
        automated match to d3uwlb_
        complexed with edo, so4, ss7, thf
      3. 2536546Domain d4o7uc_: 4o7u C: [268468]
        automated match to d3uwlb_
        complexed with edo, so4, ss7, thf
      4. 2536547Domain d4o7ud_: 4o7u D: [268470]
        automated match to d3uwlb_
        complexed with edo, so4, ss7, thf
    3. Domains for 5j7w:
      1. 2536548Domain d5j7wa_: 5j7w A: [323353]
        automated match to d3uwlb_
        complexed with mtx, so4
      2. 2536549Domain d5j7wb_: 5j7w B: [323374]
        automated match to d3uwlb_
        complexed with mtx, so4
      3. 2536550Domain d5j7wc_: 5j7w C: [323410]
        automated match to d3uwlb_
        complexed with mtx, so4
      4. 2536551Domain d5j7wd_: 5j7w D: [323368]
        automated match to d3uwlb_
        complexed with mtx, so4
  6. 2536552Fungus (Filobasidiella neoformans) [TaxId:5207] [187389] (1 PDB entry)
  7. 2536569Human (Homo sapiens) [TaxId:9606] [189245] (10 PDB entries)
    1. Domain for 3ebu:
    2. Domain for 3ed7:
    3. Domain for 3edw:
    4. Domains for 3gg5:
      1. 2536586Domain d3gg5a_: 3gg5 A: [210523]
        automated match to d2aaza_
        complexed with po4, so4
      2. 2536587Domain d3gg5b_: 3gg5 B: [210524]
        automated match to d2aaza_
        complexed with po4, so4
      3. 2536588Domain d3gg5c_: 3gg5 C: [210525]
        automated match to d2aaza_
        complexed with po4, so4
      4. 2536589Domain d3gg5d_: 3gg5 D: [210526]
        automated match to d2aaza_
        complexed with po4, so4
    5. Domain for 3gh0:
    6. Domain for 3gh2:
    7. Domain for 4g2o:
    8. Domains for 4o1u:
      1. 2536574Domain d4o1ua_: 4o1u A: [268442]
        automated match to d4eb4a_
        complexed with cl, edo, so4; mutant
      2. 2536575Domain d4o1ub_: 4o1u B: [268435]
        automated match to d4eb4a_
        complexed with cl, edo, so4; mutant
    9. Domains for 4o1x:
      1. 2536577Domain d4o1xa_: 4o1x A: [268445]
        automated match to d4eb4a_
        complexed with cl, edo, so4; mutant
      2. 2536578Domain d4o1xb_: 4o1x B: [268447]
        automated match to d4eb4a_
        complexed with cl, edo, so4; mutant
      3. 2536579Domain d4o1xc_: 4o1x C: [268446]
        automated match to d4eb4a_
        complexed with cl, edo, so4; mutant
      4. 2536580Domain d4o1xd_: 4o1x D: [268448]
        automated match to d4eb4a_
        complexed with cl, edo, so4; mutant
    10. Domains for 4up1:
      1. 2536582Domain d4up1a_: 4up1 A: [274330]
        automated match to d4eb4a_
        complexed with so4
      2. 2536583Domain d4up1b_: 4up1 B: [274331]
        automated match to d4eb4a_
        complexed with so4
      3. 2536584Domain d4up1c_: 4up1 C: [274337]
        automated match to d4eb4a_
        complexed with so4
      4. 2536585Domain d4up1d_: 4up1 D: [274332]
        automated match to d4eb4a_
        complexed with so4
  8. 2536590Human herpesvirus 8 [TaxId:37296] [328471] (3 PDB entries)
    1. Domains for 5h38:
      1. 2536591Domain d5h38a_: 5h38 A: [328531]
        automated match to d1hvya_
        complexed with po4
      2. 2536592Domain d5h38b_: 5h38 B: [328641]
        automated match to d1hvya_
        complexed with po4
    2. Domains for 5h39:
      1. 2536593Domain d5h39a_: 5h39 A: [328472]
        automated match to d1hvya_
        complexed with ump
      2. 2536594Domain d5h39b_: 5h39 B: [328530]
        automated match to d1hvya_
        complexed with ump
    3. Domains for 5h3a:
      1. 2536595Domain d5h3aa_: 5h3a A: [328624]
        automated match to d1hvya_
        complexed with d16, ump
      2. 2536596Domain d5h3ab_: 5h3a B: [328493]
        automated match to d1hvya_
        complexed with d16, ump
  9. 2536597Malaria parasite (Plasmodium falciparum) [TaxId:5833] [188759] (2 PDB entries)
    1. Domains for 3dg8:
      1. 2536598Domain d3dg8c_: 3dg8 C: [173918]
        Other proteins in same PDB: d3dg8a_, d3dg8b_
        automated match to d1j3ic_
        complexed with ndp, rj6, ump; mutant
      2. 2536599Domain d3dg8d_: 3dg8 D: [173919]
        Other proteins in same PDB: d3dg8a_, d3dg8b_
        automated match to d1j3ic_
        complexed with ndp, rj6, ump; mutant
    2. Domains for 3dga:
      1. 2536600Domain d3dgac_: 3dga C: [173920]
        Other proteins in same PDB: d3dgaa_, d3dgab_
        automated match to d1j3ic_
        complexed with ndp, rj1, ump
      2. 2536601Domain d3dgad_: 3dga D: [173921]
        Other proteins in same PDB: d3dgaa_, d3dgab_
        automated match to d1j3ic_
        complexed with ndp, rj1, ump
  10. 2536602Mouse (Mus musculus) [TaxId:10090] [225826] (7 PDB entries)
    1. Domains for 3ihh:
      1. 2536608Domain d3ihha_: 3ihh A: [305555]
        automated match to d4eb4a_
        complexed with ump
      2. 2536609Domain d3ihhb_: 3ihh B: [305556]
        automated match to d4eb4a_
        complexed with ump
      3. 2536610Domain d3ihhc_: 3ihh C: [305557]
        automated match to d4eb4a_
        complexed with ump
      4. 2536611Domain d3ihhd_: 3ihh D: [305558]
        automated match to d4eb4a_
        complexed with ump
      5. 2536612Domain d3ihhe_: 3ihh E: [305559]
        automated match to d4eb4a_
        complexed with ump
      6. 2536613Domain d3ihhf_: 3ihh F: [305560]
        automated match to d4eb4a_
        complexed with ump
    2. Domains for 3ihi:
      1. 2536624Domain d3ihia_: 3ihi A: [211690]
        automated match to d3ed7a_
        complexed with so4
      2. 2536625Domain d3ihib_: 3ihi B: [211691]
        automated match to d3ed7a_
        complexed with so4
    3. Domains for 4e5o:
      1. 2536614Domain d4e5oa_: 4e5o A: [220314]
        automated match to d3ed7a_
        complexed with bu1, ump
      2. 2536615Domain d4e5ob_: 4e5o B: [220315]
        automated match to d3ed7a_
        complexed with bu1, ump
      3. 2536616Domain d4e5oc_: 4e5o C: [220316]
        automated match to d3ed7a_
        complexed with bu1, ump
      4. 2536617Domain d4e5od_: 4e5o D: [220317]
        automated match to d3ed7a_
        complexed with bu1, ump
      5. 2536618Domain d4e5oe_: 4e5o E: [220318]
        automated match to d3ed7a_
        complexed with bu1, ump
      6. 2536619Domain d4e5of_: 4e5o F: [220319]
        automated match to d3ed7a_
        complexed with bu1, ump
    4. Domains for 4eb4:
      1. 2536620Domain d4eb4a_: 4eb4 A: [220395]
        automated match to d3ed7a_
        complexed with d16, dtt, gol, mes, so4, ump
      2. 2536621Domain d4eb4b_: 4eb4 B: [220396]
        automated match to d3ed7a_
        complexed with d16, dtt, gol, mes, so4, ump
      3. 2536622Domain d4eb4c_: 4eb4 C: [220397]
        automated match to d3ed7a_
        complexed with d16, dtt, gol, mes, so4, ump
      4. 2536623Domain d4eb4d_: 4eb4 D: [220398]
        automated match to d3ed7a_
        complexed with d16, dtt, gol, mes, so4, ump
    5. Domains for 4ein:
      1. 2536604Domain d4eina_: 4ein A: [220562]
        automated match to d3ed7a_
        complexed with gol, noh
      2. 2536605Domain d4einb_: 4ein B: [220563]
        automated match to d3ed7a_
        complexed with gol, noh
    6. Domain for 4ez8:
    7. Domains for 5fct:
      1. 2536606Domain d5fcta_: 5fct A: [324421]
        automated match to d4eb4a_
        complexed with c2f, ufp
      2. 2536607Domain d5fctb_: 5fct B: [324397]
        automated match to d4eb4a_
        complexed with c2f, ufp
  11. 2536626Mycobacterium tuberculosis [TaxId:1773] [189990] (2 PDB entries)
    1. Domains for 3qj7:
      1. 2536631Domain d3qj7a_: 3qj7 A: [184413]
        Other proteins in same PDB: d3qj7d2
        automated match to d1aiqa_
        complexed with spm, ump
      2. 2536632Domain d3qj7b_: 3qj7 B: [184414]
        Other proteins in same PDB: d3qj7d2
        automated match to d1aiqa_
        complexed with spm, ump
      3. 2536633Domain d3qj7c_: 3qj7 C: [184415]
        Other proteins in same PDB: d3qj7d2
        automated match to d1aiqa_
        complexed with spm, ump
      4. 2536634Domain d3qj7d1: 3qj7 D:1-263 [184416]
        Other proteins in same PDB: d3qj7d2
        automated match to d1aiqa_
        complexed with spm, ump
    2. Domains for 4foa:
      1. 2536627Domain d4foaa1: 4foa A:1-260 [221388]
        Other proteins in same PDB: d4foaa2
        automated match to d3qj7d_
        complexed with ufp
      2. 2536628Domain d4foab_: 4foa B: [221389]
        Other proteins in same PDB: d4foaa2
        automated match to d3qj7c_
        complexed with ufp
      3. 2536629Domain d4foac_: 4foa C: [221390]
        Other proteins in same PDB: d4foaa2
        automated match to d3qj7a_
        complexed with ufp
      4. 2536630Domain d4foad_: 4foa D: [221391]
        Other proteins in same PDB: d4foaa2
        automated match to d3qj7c_
        complexed with ufp
  12. 2536635Mycobacterium tuberculosis [TaxId:83332] [224938] (3 PDB entries)
    1. Domains for 4fog:
      1. 2536646Domain d4foga_: 4fog A: [221401]
        automated match to d1jg0a_
        complexed with c2f, ufp
      2. 2536647Domain d4fogb_: 4fog B: [221402]
        automated match to d1jg0a_
        complexed with c2f, ufp
      3. 2536648Domain d4fogc_: 4fog C: [221403]
        automated match to d1jg0a_
        complexed with c2f, ufp
      4. 2536649Domain d4fogd_: 4fog D: [221404]
        automated match to d1jg0a_
        complexed with c2f, ufp
    2. Domains for 4fox:
      1. 2536638Domain d4foxa_: 4fox A: [221413]
        automated match to d1jg0a_
        complexed with d16, ump
      2. 2536639Domain d4foxb_: 4fox B: [221414]
        automated match to d1jg0a_
        complexed with d16, ump
      3. 2536640Domain d4foxc_: 4fox C: [221415]
        automated match to d1jg0a_
        complexed with d16, ump
      4. 2536641Domain d4foxd_: 4fox D: [221416]
        automated match to d1jg0a_
        complexed with d16, ump
      5. 2536642Domain d4foxe_: 4fox E: [221417]
        automated match to d1jg0a_
        complexed with d16, ump
      6. 2536643Domain d4foxf_: 4fox F: [221418]
        automated match to d1jg0a_
        complexed with d16, ump
      7. 2536644Domain d4foxg_: 4fox G: [221419]
        automated match to d1jg0a_
        complexed with d16, ump
      8. 2536645Domain d4foxh_: 4fox H: [221420]
        automated match to d1jg0a_
        complexed with d16, ump
    3. Domains for 4fqs:
      1. 2536636Domain d4fqsa_: 4fqs A: [221464]
        automated match to d1jg0a_
        complexed with lya, ump
      2. 2536637Domain d4fqsb_: 4fqs B: [221465]
        automated match to d1jg0a_
        complexed with lya, ump
  13. 2536650Staphylococcus aureus [TaxId:158878] [195805] (1 PDB entry)
  14. 2536653Trichinella spiralis [TaxId:6334] [226731] (2 PDB entries)
    1. Domains for 5by6:
      1. 2536656Domain d5by6a_: 5by6 A: [273889]
        automated match to d4irra_
        complexed with dtt, gol, ump
      2. 2536657Domain d5by6b_: 5by6 B: [273887]
        automated match to d4irra_
        complexed with dtt, gol, ump
      3. 2536658Domain d5by6c_: 5by6 C: [273886]
        automated match to d4irra_
        complexed with dtt, gol, ump
      4. 2536659Domain d5by6d_: 5by6 D: [273888]
        automated match to d4irra_
        complexed with dtt, gol, ump
    2. Domains for 5m4z:
      1. 2536654Domain d5m4za_: 5m4z A: [343053]
        automated match to d4irra_
        complexed with 7k8, gol
      2. 2536655Domain d5m4zb_: 5m4z B: [343049]
        automated match to d4irra_
        complexed with 7k8, gol
  15. 2536660Varicella-zoster virus (strain oka vaccine) [TaxId:341980] [311478] (3 PDB entries)
    1. Domains for 4xsc:
      1. 2536661Domain d4xsca_: 4xsc A: [310053]
        automated match to d4ez8a_
        complexed with 1pe, bvp
      2. 2536662Domain d4xscb_: 4xsc B: [310054]
        automated match to d4ez8a_
        complexed with 1pe, bvp
      3. 2536663Domain d4xscc_: 4xsc C: [310055]
        automated match to d4ez8a_
        complexed with 1pe, bvp
      4. 2536664Domain d4xscd_: 4xsc D: [310056]
        automated match to d4ez8a_
        complexed with 1pe, bvp
    2. Domains for 4xsd:
      1. 2536665Domain d4xsda_: 4xsd A: [310057]
        automated match to d4ez8a_
        complexed with ump
      2. 2536666Domain d4xsdb_: 4xsd B: [310058]
        automated match to d4ez8a_
        complexed with ump
      3. 2536667Domain d4xsdc_: 4xsd C: [310059]
        automated match to d4ez8a_
        complexed with ump
      4. 2536668Domain d4xsdd_: 4xsd D: [310060]
        automated match to d4ez8a_
        complexed with ump
    3. Domains for 4xse:
      1. 2536669Domain d4xsea_: 4xse A: [310061]
        automated match to d4ez8a_
        complexed with po4
      2. 2536670Domain d4xseb_: 4xse B: [310062]
        automated match to d4ez8a_
        complexed with po4
      3. 2536671Domain d4xsec_: 4xse C: [310063]
        automated match to d4ez8a_
        complexed with po4
      4. 2536672Domain d4xsed_: 4xse D: [310064]
        automated match to d4ez8a_
        complexed with po4

More info for Protein automated matches from d.117.1.1: Thymidylate synthase/dCMP hydroxymethylase

Timeline for Protein automated matches from d.117.1.1: Thymidylate synthase/dCMP hydroxymethylase: