Species:

1. Achromobacter xylosoxidans [TaxId:85698] [188921] (1 PDB entry)

   • Domain for 2zon:

     • Domain d2zong_: 2zon G: [171386] Other proteins in same PDB: d2zona1, d2zona2, d2zonb1, d2zonb2, d2zonc1, d2zonc2 automated match to d1kx2a_ complexed with cu, hem

2. Aquifex aeolicus [TaxId:224324] [268117] (1 PDB entry)

   • Domains for 3x15:

     1. Domain d3x15a_: 3x15 A: [268119] automated match to d2zxya_ complexed with hec

     2. Domain d3x15d_: 3x15 D: [268121] automated match to d2zxya_ complexed with hec

     3. Domain d3x15g_: 3x15 G: [268123] automated match to d2zxya_ complexed with hec

     4. Domain d3x15j_: 3x15 J: [268122] automated match to d2zxya_ complexed with hec

3. Aquifex aeolicus [TaxId:63363] [189042] (1 PDB entry)

   • Domain for 2zxy:

     • Domain d2zxya_: 2zxy A: [171602] automated match to d1cora_ complexed with hec

4. Chlorobium tepidum [TaxId:194439] [228039] (1 PDB entry)

   • Domains for 4j20:

     1. Domain d4j20a_: 4j20 A: [228040] automated match to d2v08a_ complexed with heb, ipa, na, so4

     2. Domain d4j20b_: 4j20 B: [228041] automated match to d2v08a_ complexed with heb, ipa, na, so4

5. Geobacter sulfurreducens [TaxId:243231] [226497] (4 PDB entries)

   1. Domains for 4aal:

      1. Domain d4aala1: 4aal A:23-188 [218750] automated match to d1nmla1 complexed with act, ca, eoh, hec, po4

      2. Domain d4aala2: 4aal A:189-346 [218751] automated match to d1nmla2 complexed with act, ca, eoh, hec, po4

      3. Domain d4aalb1: 4aal B:23-188 [218752] automated match to d1nmla1 complexed with act, ca, eoh, hec, po4

      4. Domain d4aalb2: 4aal B:189-346 [218753] automated match to d1nmla2 complexed with act, ca, eoh, hec, po4

   2. Domains for 4aam:

      1. Domain d4aama1: 4aam A:23-188 [218754] automated match to d1nmla1 complexed with ca, hec, so4

      2. Domain d4aama2: 4aam A:189-346 [218755] automated match to d1nmla2 complexed with ca, hec, so4

   3. Domains for 4aan:

      1. Domain d4aana1: 4aan A:24-188 [218756] automated match to d1nmla1 complexed with bu3, ca, hec

      2. Domain d4aana2: 4aan A:189-346 [218757] automated match to d1nmla2 complexed with bu3, ca, hec

   4. Domains for 4aao:

      1. Domain d4aaoa1: 4aao A:23-188 [218758] automated match to d1nmla1 complexed with ca, hec, so4

      2. Domain d4aaoa2: 4aao A:189-346 [218759] automated match to d1nmla2 complexed with ca, hec, so4

      3. Domain d4aaob1: 4aao B:23-188 [218760] automated match to d1nmla1 complexed with ca, hec, so4

      4. Domain d4aaob2: 4aao B:189-345 [218761] automated match to d1nmla2 complexed with ca, hec, so4

6. Geobacter sulfurreducens [TaxId:35554] [188580] (6 PDB entries)

   1. Domain for 3cu4:

      • Domain d3cu4a_: 3cu4 A: [173463] automated match to d1gdva_ complexed with hem

   2. Domain for 3dp5:

      • Domain d3dp5a_: 3dp5 A: [174142] automated match to d1gdva_ complexed with hem, so4

   3. Domains for 3hq6:

      1. Domain d3hq6a1: 3hq6 A:22-188 [211210] automated match to d1nmla1 complexed with ca, hem

      2. Domain d3hq6a2: 3hq6 A:189-345 [211211] automated match to d1nmla2 complexed with ca, hem

      3. Domain d3hq6b1: 3hq6 B:22-188 [211212] automated match to d1nmla1 complexed with ca, hem

      4. Domain d3hq6b2: 3hq6 B:189-345 [211213] automated match to d1nmla2 complexed with ca, hem

   4. Domains for 3hq7:

      1. Domain d3hq7a1: 3hq7 A:20-188 [211214] automated match to d1nmla1 complexed with ca, hem

      2. Domain d3hq7a2: 3hq7 A:189-345 [211215] automated match to d1nmla2 complexed with ca, hem

   5. Domains for 3hq8:

      1. Domain d3hq8a1: 3hq8 A:22-188 [211216] automated match to d1nmla1 complexed with ca, hem, imd

      2. Domain d3hq8a2: 3hq8 A:189-345 [211217] automated match to d1nmla2 complexed with ca, hem, imd

      3. Domain d3hq8b1: 3hq8 B:22-188 [211218] automated match to d1nmla1 complexed with ca, hem, imd

      4. Domain d3hq8b2: 3hq8 B:189-345 [211219] automated match to d1nmla2 complexed with ca, hem, imd

   6. Domains for 3hq9:

      1. Domain d3hq9a1: 3hq9 A:22-188 [211220] automated match to d1nmla1 complexed with bu3, ca, hem, imd, oxl

      2. Domain d3hq9a2: 3hq9 A:189-345 [211221] automated match to d1nmla2 complexed with bu3, ca, hem, imd, oxl

      3. Domain d3hq9b1: 3hq9 B:21-188 [211222] automated match to d1nmla1 complexed with bu3, ca, hem, imd, oxl

      4. Domain d3hq9b2: 3hq9 B:189-345 [211223] automated match to d1nmla2 complexed with bu3, ca, hem, imd, oxl

7. Hydrogenophilus thermoluteolus [TaxId:297] [187588] (1 PDB entry)

   • Domain for 2d0s:

     • Domain d2d0sa_: 2d0s A: [163536] automated match to d1dvva_ complexed with hec

8. Hyphomicrobium denitrificans [TaxId:53399] [187593] (1 PDB entry)

   • Domains for 2d0w:

     1. Domain d2d0wa_: 2d0w A: [163543] automated match to d2c8sa1 complexed with hem, zn

     2. Domain d2d0wb_: 2d0w B: [163544] automated match to d2c8sa1 complexed with hem, zn

9. Nitrosomonas europaea [TaxId:915] [224844] (2 PDB entries)

   1. Domains for 3zox:

      1. Domain d3zoxa_: 3zox A: [218383] automated match to d1ynrb_ complexed with hec; mutant

      2. Domain d3zoxb_: 3zox B: [218384] automated match to d1ynrb_ complexed with hec; mutant

      3. Domain d3zoxc_: 3zox C: [218385] automated match to d1ynrb_ complexed with hec; mutant

      4. Domain d3zoxd_: 3zox D: [218386] automated match to d1ynrb_ complexed with hec; mutant

   2. Domains for 3zoy:

      1. Domain d3zoya_: 3zoy A: [218387] automated match to d1ynrb_ complexed with hec; mutant

      2. Domain d3zoyb_: 3zoy B: [218388] automated match to d1ynrb_ complexed with hec; mutant

      3. Domain d3zoyc_: 3zoy C: [218389] automated match to d1ynrb_ complexed with hec; mutant

      4. Domain d3zoyd_: 3zoy D: [218390] automated match to d1ynrb_ complexed with hec; mutant

10. Paracoccus denitrificans [TaxId:266] [225029] (1 PDB entry)

    • Domains for 2c1d:

      1. Domain d2c1da1: 2c1d A:27-179 [197825] automated match to d1h32a1 complexed with hec, zn

      2. Domain d2c1da2: 2c1d A:180-290 [197826] automated match to d1h32a2 complexed with hec, zn

      3. Domain d2c1dc1: 2c1d C:27-179 [197827] automated match to d1h32a1 complexed with hec, zn

      4. Domain d2c1dc2: 2c1d C:180-290 [197828] automated match to d1h32a2 complexed with hec, zn

      5. Domain d2c1de1: 2c1d E:27-179 [197829] automated match to d1h32a1 complexed with hec, zn

      6. Domain d2c1de2: 2c1d E:180-290 [197830] automated match to d1h32a2 complexed with hec, zn

      7. Domain d2c1dg1: 2c1d G:27-179 [197831] automated match to d1h32a1 complexed with hec, zn

      8. Domain d2c1dg2: 2c1d G:180-290 [197832] automated match to d1h32a2 complexed with hec, zn

11. Paracoccus pantotrophus [TaxId:82367] [187503] (3 PDB entries)

    1. Domains for 2c1d:

       1. Domain d2c1db_: 2c1d B: [163223] automated match to d1h31b_ complexed with hec, zn

       2. Domain d2c1dd_: 2c1d D: [163224] automated match to d1h31b_ complexed with hec, zn

       3. Domain d2c1df_: 2c1d F: [163225] automated match to d1h31b_ complexed with hec, zn

       4. Domain d2c1dh_: 2c1d H: [163226] automated match to d1h31b_ complexed with hec, zn

    2. Domains for 2c1u:

       1. Domain d2c1ua1: 2c1u A:4-180 [203691] automated match to d1nmla1 complexed with ca, hec

       2. Domain d2c1ua2: 2c1u A:181-338 [203692] automated match to d1nmla2 complexed with ca, hec

       3. Domain d2c1ub1: 2c1u B:4-180 [203693] automated match to d1nmla1 complexed with ca, hec

       4. Domain d2c1ub2: 2c1u B:181-338 [203694] automated match to d1nmla2 complexed with ca, hec

       5. Domain d2c1uc1: 2c1u C:4-180 [203695] automated match to d1nmla1 complexed with ca, hec

       6. Domain d2c1uc2: 2c1u C:181-338 [203696] automated match to d1nmla2 complexed with ca, hec

       7. Domain d2c1ud1: 2c1u D:4-180 [203697] automated match to d1nmla1 complexed with ca, hec

       8. Domain d2c1ud2: 2c1u D:181-338 [203698] automated match to d1nmla2 complexed with ca, hec

    3. Domains for 2c1v:

       1. Domain d2c1va1: 2c1v A:4-180 [203699] automated match to d1nmla1 complexed with ca, edo, hec

       2. Domain d2c1va2: 2c1v A:181-338 [203700] automated match to d1nmla2 complexed with ca, edo, hec

       3. Domain d2c1vb1: 2c1v B:4-180 [203701] automated match to d1nmla1 complexed with ca, edo, hec

       4. Domain d2c1vb2: 2c1v B:181-338 [203702] automated match to d1nmla2 complexed with ca, edo, hec

12. Rhodobacter capsulatus [TaxId:1061] [225039] (1 PDB entry)

    • Domains for 1zzh:

      1. Domain d1zzha1: 1zzh A:4-169 [203372] automated match to d1nmla1 complexed with ca, hec, zn

      2. Domain d1zzha2: 1zzh A:170-326 [203373] automated match to d1nmla2 complexed with ca, hec, zn

      3. Domain d1zzhb1: 1zzh B:4-169 [203374] automated match to d1nmla1 complexed with ca, hec, zn

      4. Domain d1zzhb2: 1zzh B:170-326 [203375] automated match to d1nmla2 complexed with ca, hec, zn

      5. Domain d1zzhc1: 1zzh C:4-169 [203376] automated match to d1nmla1 complexed with ca, hec, zn

      6. Domain d1zzhc2: 1zzh C:170-326 [203377] automated match to d1nmla2 complexed with ca, hec, zn

      7. Domain d1zzhd1: 1zzh D:4-169 [203378] automated match to d1nmla1 complexed with ca, hec, zn

      8. Domain d1zzhd2: 1zzh D:170-326 [203379] automated match to d1nmla2 complexed with ca, hec, zn

13. Rhodothermus marinus [TaxId:29549] [193856] (1 PDB entry)

    • Domain for 1w2l:

      • Domain d1w2la_: 1w2l A: [193857] automated match to d1cora_ complexed with act, hem, trs

14. Shewanella oneidensis [TaxId:70863] [226180] (1 PDB entry)

    • Domains for 3o5c:

      1. Domain d3o5ca1: 3o5c A:24-171 [214172] automated match to d1iqca1 complexed with bu3, ca, hem

      2. Domain d3o5ca2: 3o5c A:172-331 [214173] automated match to d1iqca2 complexed with bu3, ca, hem

      3. Domain d3o5cb1: 3o5c B:24-171 [214174] automated match to d1iqca1 complexed with bu3, ca, hem

      4. Domain d3o5cb2: 3o5c B:172-330 [214175] automated match to d1iqca2 complexed with bu3, ca, hem

      5. Domain d3o5cc1: 3o5c C:24-171 [214176] automated match to d1iqca1 complexed with bu3, ca, hem

      6. Domain d3o5cc2: 3o5c C:172-328 [214177] automated match to d1iqca2 complexed with bu3, ca, hem

      7. Domain d3o5cd1: 3o5c D:24-171 [214178] automated match to d1iqca1 complexed with bu3, ca, hem

      8. Domain d3o5cd2: 3o5c D:172-330 [214179] automated match to d1iqca2 complexed with bu3, ca, hem

15. Sideroxydans lithotrophicus [TaxId:580332] [271583] (1 PDB entry)

    • Domain for 4xxl:

      • Domain d4xxla_: 4xxl A: [271584] automated match to d4jcga_ complexed with hem

16. Synechococcus sp. [TaxId:32049] [196764] (2 PDB entries)

    1. Domain for 4eie:

       • Domain d4eiea_: 4eie A: [196766] automated match to d3ph2b_ complexed with cl, hem, na

    2. Domain for 4eif:

       • Domain d4eifa_: 4eif A: [196765] automated match to d2v08a_ complexed with cl, hem, na; mutant

17. Synechococcus sp. [TaxId:84588] [237969] (1 PDB entry)

    • Domain for 4kmg:

      • Domain d4kmga_: 4kmg A: [237970] automated match to d1ls9a_ complexed with hem, na

18. Thale cress (Arabidopsis thaliana) [TaxId:3702] [187367] (4 PDB entries)

    1. Domain for 2ce0:

       • Domain d2ce0a_: 2ce0 A: [163376] automated match to d1c6sa_ complexed with hec

    2. Domain for 2ce1:

       • Domain d2ce1a_: 2ce1 A: [163377] automated match to d1c6sa_ complexed with hec

    3. Domains for 2dge:

       1. Domain d2dgea_: 2dge A: [163627] automated match to d1c6sa_ complexed with hem, zn

       2. Domain d2dgeb_: 2dge B: [163628] automated match to d1c6sa_ complexed with hem, zn

       3. Domain d2dgec_: 2dge C: [163629] automated match to d1c6sa_ complexed with hem, zn

       4. Domain d2dged_: 2dge D: [163630] automated match to d1c6sa_ complexed with hem, zn

    4. Domain for 2v07:

       • Domain d2v07a_: 2v07 A: [168270] automated match to d1c6sa_ complexed with hem

More info for Protein automated matches from a.3.1.0: automated matches

Timeline for Protein automated matches from a.3.1.0: automated matches:

• Protein automated matches from a.3.1.0: automated matches first appeared in SCOPe 2.01
  
• Protein automated matches from a.3.1.0: automated matches appears in SCOPe 2.04
  
• Protein automated matches from a.3.1.0: automated matches appears in SCOPe 2.06
  
• Protein automated matches from a.3.1.0: automated matches appears in the current release, SCOPe 2.08