Lineage for Protein: automated matches

  1. Root: SCOPe 2.06
  2. 1976409Class a: All alpha proteins [46456] (289 folds)
  3. 1980368Fold a.3: Cytochrome c [46625] (1 superfamily)
    core: 3 helices; folded leaf, opened
  4. 1980369Superfamily a.3.1: Cytochrome c [46626] (9 families) (S)
    covalently-bound heme completes the core
  5. 1981026Family a.3.1.0: automated matches [191374] (1 protein)
    not a true family
  6. 1981027Protein automated matches [190453] (22 species)
    not a true protein

Species:

  1. 1981028Achromobacter xylosoxidans [TaxId:85698] [188921] (1 PDB entry)
  2. 1981030Aquifex aeolicus [TaxId:224324] [268117] (1 PDB entry)
  3. 1981035Aquifex aeolicus [TaxId:63363] [189042] (1 PDB entry)
  4. 1981037Chlorobium tepidum [TaxId:194439] [228039] (1 PDB entry)
  5. 1981040Geobacter sulfurreducens [TaxId:243231] [226497] (5 PDB entries)
    1. Domains for 4aal:
      1. 1981043Domain d4aala1: 4aal A:23-188 [218750]
        automated match to d1nmla1
        complexed with act, ca, eoh, hec, po4
      2. 1981044Domain d4aala2: 4aal A:189-346 [218751]
        automated match to d1nmla2
        complexed with act, ca, eoh, hec, po4
      3. 1981045Domain d4aalb1: 4aal B:23-188 [218752]
        automated match to d1nmla1
        complexed with act, ca, eoh, hec, po4
      4. 1981046Domain d4aalb2: 4aal B:189-346 [218753]
        automated match to d1nmla2
        complexed with act, ca, eoh, hec, po4
    2. Domains for 4aam:
      1. 1981047Domain d4aama1: 4aam A:23-188 [218754]
        automated match to d1nmla1
        complexed with ca, hec, so4
      2. 1981048Domain d4aama2: 4aam A:189-346 [218755]
        automated match to d1nmla2
        complexed with ca, hec, so4
    3. Domains for 4aan:
      1. 1981041Domain d4aana1: 4aan A:24-188 [218756]
        automated match to d1nmla1
        complexed with bu3, ca, hec
      2. 1981042Domain d4aana2: 4aan A:189-346 [218757]
        automated match to d1nmla2
        complexed with bu3, ca, hec
    4. Domains for 4aao:
      1. 1981049Domain d4aaoa1: 4aao A:23-188 [218758]
        automated match to d1nmla1
        complexed with ca, hec, so4
      2. 1981050Domain d4aaoa2: 4aao A:189-346 [218759]
        automated match to d1nmla2
        complexed with ca, hec, so4
      3. 1981051Domain d4aaob1: 4aao B:23-188 [218760]
        automated match to d1nmla1
        complexed with ca, hec, so4
      4. 1981052Domain d4aaob2: 4aao B:189-345 [218761]
        automated match to d1nmla2
        complexed with ca, hec, so4
    5. Domain for 5mcs:
  6. 1981053Geobacter sulfurreducens [TaxId:35554] [188580] (6 PDB entries)
    1. Domain for 3cu4:
    2. Domain for 3dp5:
    3. Domains for 3hq6:
      1. 1981060Domain d3hq6a1: 3hq6 A:22-188 [211210]
        automated match to d1nmla1
        complexed with ca, hem
      2. 1981061Domain d3hq6a2: 3hq6 A:189-345 [211211]
        automated match to d1nmla2
        complexed with ca, hem
      3. 1981062Domain d3hq6b1: 3hq6 B:22-188 [211212]
        automated match to d1nmla1
        complexed with ca, hem
      4. 1981063Domain d3hq6b2: 3hq6 B:189-345 [211213]
        automated match to d1nmla2
        complexed with ca, hem
    4. Domains for 3hq7:
      1. 1981064Domain d3hq7a1: 3hq7 A:20-188 [211214]
        automated match to d1nmla1
        complexed with ca, hem
      2. 1981065Domain d3hq7a2: 3hq7 A:189-345 [211215]
        automated match to d1nmla2
        complexed with ca, hem
    5. Domains for 3hq8:
      1. 1981066Domain d3hq8a1: 3hq8 A:22-188 [211216]
        automated match to d1nmla1
        complexed with ca, hem, imd
      2. 1981067Domain d3hq8a2: 3hq8 A:189-345 [211217]
        automated match to d1nmla2
        complexed with ca, hem, imd
      3. 1981068Domain d3hq8b1: 3hq8 B:22-188 [211218]
        automated match to d1nmla1
        complexed with ca, hem, imd
      4. 1981069Domain d3hq8b2: 3hq8 B:189-345 [211219]
        automated match to d1nmla2
        complexed with ca, hem, imd
    6. Domains for 3hq9:
      1. 1981055Domain d3hq9a1: 3hq9 A:22-188 [211220]
        automated match to d1nmla1
        complexed with bu3, ca, hem, imd, oxl
      2. 1981056Domain d3hq9a2: 3hq9 A:189-345 [211221]
        automated match to d1nmla2
        complexed with bu3, ca, hem, imd, oxl
      3. 1981057Domain d3hq9b1: 3hq9 B:21-188 [211222]
        automated match to d1nmla1
        complexed with bu3, ca, hem, imd, oxl
      4. 1981058Domain d3hq9b2: 3hq9 B:189-345 [211223]
        automated match to d1nmla2
        complexed with bu3, ca, hem, imd, oxl
  7. 1981070Hydrogenophilus thermoluteolus [TaxId:297] [187588] (1 PDB entry)
  8. 1981072Hyphomicrobium denitrificans [TaxId:53399] [187593] (1 PDB entry)
  9. 1981075Methylobacterium extorquens [311180] (1 PDB entry)
  10. 1981077Nitrosomonas europaea [TaxId:915] [224844] (2 PDB entries)
    1. Domains for 3zox:
      1. 1981082Domain d3zoxa_: 3zox A: [218383]
        automated match to d1ynrb_
        complexed with hec; mutant
      2. 1981083Domain d3zoxb_: 3zox B: [218384]
        automated match to d1ynrb_
        complexed with hec; mutant
      3. 1981084Domain d3zoxc_: 3zox C: [218385]
        automated match to d1ynrb_
        complexed with hec; mutant
      4. 1981085Domain d3zoxd_: 3zox D: [218386]
        automated match to d1ynrb_
        complexed with hec; mutant
    2. Domains for 3zoy:
      1. 1981078Domain d3zoya_: 3zoy A: [218387]
        automated match to d1ynrb_
        complexed with hec; mutant
      2. 1981079Domain d3zoyb_: 3zoy B: [218388]
        automated match to d1ynrb_
        complexed with hec; mutant
      3. 1981080Domain d3zoyc_: 3zoy C: [218389]
        automated match to d1ynrb_
        complexed with hec; mutant
      4. 1981081Domain d3zoyd_: 3zoy D: [218390]
        automated match to d1ynrb_
        complexed with hec; mutant
  11. 1981086Paracoccus denitrificans [TaxId:266] [225029] (1 PDB entry)
  12. 1981095Paracoccus pantotrophus [TaxId:82367] [187503] (3 PDB entries)
    1. Domains for 2c1d:
      1. 1981100Domain d2c1db_: 2c1d B: [163223]
        automated match to d1h31b_
        complexed with hec, zn
      2. 1981101Domain d2c1dd_: 2c1d D: [163224]
        automated match to d1h31b_
        complexed with hec, zn
      3. 1981102Domain d2c1df_: 2c1d F: [163225]
        automated match to d1h31b_
        complexed with hec, zn
      4. 1981103Domain d2c1dh_: 2c1d H: [163226]
        automated match to d1h31b_
        complexed with hec, zn
    2. Domains for 2c1u:
      1. 1981104Domain d2c1ua1: 2c1u A:4-180 [203691]
        automated match to d1nmla1
        complexed with ca, hec
      2. 1981105Domain d2c1ua2: 2c1u A:181-338 [203692]
        automated match to d1nmla2
        complexed with ca, hec
      3. 1981106Domain d2c1ub1: 2c1u B:4-180 [203693]
        automated match to d1nmla1
        complexed with ca, hec
      4. 1981107Domain d2c1ub2: 2c1u B:181-338 [203694]
        automated match to d1nmla2
        complexed with ca, hec
      5. 1981108Domain d2c1uc1: 2c1u C:4-180 [203695]
        automated match to d1nmla1
        complexed with ca, hec
      6. 1981109Domain d2c1uc2: 2c1u C:181-338 [203696]
        automated match to d1nmla2
        complexed with ca, hec
      7. 1981110Domain d2c1ud1: 2c1u D:4-180 [203697]
        automated match to d1nmla1
        complexed with ca, hec
      8. 1981111Domain d2c1ud2: 2c1u D:181-338 [203698]
        automated match to d1nmla2
        complexed with ca, hec
    3. Domains for 2c1v:
      1. 1981096Domain d2c1va1: 2c1v A:4-180 [203699]
        automated match to d1nmla1
        complexed with ca, edo, hec
      2. 1981097Domain d2c1va2: 2c1v A:181-338 [203700]
        automated match to d1nmla2
        complexed with ca, edo, hec
      3. 1981098Domain d2c1vb1: 2c1v B:4-180 [203701]
        automated match to d1nmla1
        complexed with ca, edo, hec
      4. 1981099Domain d2c1vb2: 2c1v B:181-338 [203702]
        automated match to d1nmla2
        complexed with ca, edo, hec
  13. 1981112Rhodobacter capsulatus [TaxId:1061] [225039] (1 PDB entry)
  14. 1981121Rhodothermus marinus [TaxId:29549] [193856] (1 PDB entry)
  15. 1981123Shewanella oneidensis [TaxId:70863] [226180] (1 PDB entry)
  16. 1981132Sideroxydans lithotrophicus [TaxId:580332] [271583] (1 PDB entry)
  17. 1981134Synechococcus sp. [TaxId:32049] [196764] (2 PDB entries)
    1. Domain for 4eie:
    2. Domain for 4eif:
  18. 1981137Synechococcus sp. [TaxId:84588] [237969] (1 PDB entry)
  19. 1981139Thale cress (Arabidopsis thaliana) [TaxId:3702] [187367] (4 PDB entries)
    1. Domain for 2ce0:
    2. Domain for 2ce1:
    3. Domains for 2dge:
      1. 1981142Domain d2dgea_: 2dge A: [163627]
        automated match to d1c6sa_
        complexed with hem, zn
      2. 1981143Domain d2dgeb_: 2dge B: [163628]
        automated match to d1c6sa_
        complexed with hem, zn
      3. 1981144Domain d2dgec_: 2dge C: [163629]
        automated match to d1c6sa_
        complexed with hem, zn
      4. 1981145Domain d2dged_: 2dge D: [163630]
        automated match to d1c6sa_
        complexed with hem, zn
    4. Domain for 2v07:
  20. 2280847Shewanella violacea [TaxId:60217] [324148] (1 PDB entry)
  21. 2284404Thermosynechococcus elongatus [TaxId:197221] [327705] (4 PDB entries)
    1. Domain for 5kaf:
    2. Domain for 5kai:
    3. Domain for 5mx2:
    4. Domain for 5tis:
  22. 2286104Thermosynechococcus vulcanus [TaxId:32053] [329405] (6 PDB entries)
    1. Domain for 5b5e:
    2. Domain for 5b66:
    3. Domain for 5gth:
      • 2288272Domain d5gthv_: 5gth V: [331573]
        Other proteins in same PDB: d5gthf_, d5gthi_, d5gthz_
        automated match to d1e29a_
        complexed with bcr, bct, ca, cl, cla, dgd, fe2, gol, hem, htg, lhg, lmg, lmt, mg, oex, pho, pl9, sqd, unl
    4. Domain for 5v2c:
    5. Domain for 5ws5:
    6. Domain for 5ws6:

More info for Protein automated matches from a.3.1.0: automated matches

Timeline for Protein automated matches from a.3.1.0: automated matches: