SCOPe Funding Alert: SCOPe support from the NIH ended in April 2016. John-Marc Chandonia is the primary maintainer and has continued to develop SCOPe using vacation time. Three proposals to the NIH for continued funding have been unsuccessful. If our current NIH proposal is not funded, SCOPe will shut down permanently in Summer 2017 as Dr. Chandonia will need to seek a new position.

Lineage for Protein: automated matches

  1. Root: SCOPe 2.06
  2. 2078559Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2142620Fold c.88: Glutaminase/Asparaginase [53773] (1 superfamily)
    consists of two non-similar alpha/beta domains, 3 layers (a/b/a) each
    Domain 1 has mixed beta-sheet of 6 strands, order 213456, strand 6 is antiparallel to the rest; left-handed crossover connection between strands 4 and 5
    Domain 2 has parallel beta-sheet of 4 strands, order 1234
  4. 2142621Superfamily c.88.1: Glutaminase/Asparaginase [53774] (2 families) (S)
  5. 2142622Family c.88.1.1: Glutaminase/Asparaginase [53775] (4 protein domains)
    automatically mapped to Pfam PF00710
  6. 2142708Protein automated matches [190446] (8 species)
    not a true protein

Species:

  1. 2142709Escherichia coli [TaxId:562] [225264] (3 PDB entries)
    1. Domains for 2him:
      1. 2142714Domain d2hima_: 2him A: [204560]
        Other proteins in same PDB: d2himb2, d2himd2
        automated match to d3ntxa_
        complexed with asn, asp, edo
      2. 2142715Domain d2himb1: 2him B:1-337 [204561]
        Other proteins in same PDB: d2himb2, d2himd2
        automated match to d3ntxa_
        complexed with asn, asp, edo
      3. 2142716Domain d2himc_: 2him C: [204562]
        Other proteins in same PDB: d2himb2, d2himd2
        automated match to d3ntxa_
        complexed with asn, asp, edo
      4. 2142717Domain d2himd1: 2him D:1-337 [204563]
        Other proteins in same PDB: d2himb2, d2himd2
        automated match to d3ntxa_
        complexed with asn, asp, edo
    2. Domains for 2p2d:
      1. 2142710Domain d2p2da_: 2p2d A: [205415]
        automated match to d3ntxa_
        complexed with gol
      2. 2142711Domain d2p2db_: 2p2d B: [205416]
        automated match to d3ntxa_
        complexed with gol
      3. 2142712Domain d2p2dc_: 2p2d C: [205417]
        automated match to d3ntxa_
        complexed with gol
      4. 2142713Domain d2p2dd_: 2p2d D: [205418]
        automated match to d3ntxa_
        complexed with gol
    3. Domains for 2p2n:
      1. 2142718Domain d2p2na_: 2p2n A: [205431]
        Other proteins in same PDB: d2p2nb2, d2p2nd2
        automated match to d3ntxa_
        complexed with asn, asp, cl, edo
      2. 2142719Domain d2p2nb1: 2p2n B:1-337 [205432]
        Other proteins in same PDB: d2p2nb2, d2p2nd2
        automated match to d3ntxa_
        complexed with asn, asp, cl, edo
      3. 2142720Domain d2p2nc_: 2p2n C: [205433]
        Other proteins in same PDB: d2p2nb2, d2p2nd2
        automated match to d3ntxa_
        complexed with asn, asp, cl, edo
      4. 2142721Domain d2p2nd1: 2p2n D:1-337 [205434]
        Other proteins in same PDB: d2p2nb2, d2p2nd2
        automated match to d3ntxa_
        complexed with asn, asp, cl, edo
  2. Methanothermobacter thermautotrophicus [TaxId:145262] [255110] (1 PDB entry)
  3. 2142724Pectobacterium atrosepticum [TaxId:218491] [255007] (1 PDB entry)
  4. 2142733Pectobacterium atrosepticum [TaxId:29471] [187353] (2 PDB entries)
    1. Domains for 2gvn:
      1. 2142734Domain d2gvna_: 2gvn A: [164854]
        automated match to d1hg0a_
        complexed with asp
      2. 2142735Domain d2gvnb_: 2gvn B: [164855]
        automated match to d1hg0a_
        complexed with asp
      3. 2142736Domain d2gvnc_: 2gvn C: [164856]
        automated match to d1hg0a_
        complexed with asp
      4. 2142737Domain d2gvnd_: 2gvn D: [164857]
        automated match to d1hg0a_
        complexed with asp
      5. 2142738Domain d2gvne_: 2gvn E: [164858]
        automated match to d1hg0a_
        complexed with asp
      6. 2142739Domain d2gvnf_: 2gvn F: [164859]
        automated match to d1hg0a_
        complexed with asp
      7. 2142740Domain d2gvng_: 2gvn G: [164860]
        automated match to d1hg0a_
        complexed with asp
      8. 2142741Domain d2gvnh_: 2gvn H: [164861]
        automated match to d1hg0a_
        complexed with asp
    2. Domains for 2hln:
      1. 2142742Domain d2hlna_: 2hln A: [165139]
        automated match to d1hg0a_
        complexed with glu, peg
      2. 2142743Domain d2hlnb_: 2hln B: [165140]
        automated match to d1hg0a_
        complexed with glu, peg
      3. 2142744Domain d2hlnc_: 2hln C: [165141]
        automated match to d1hg0a_
        complexed with glu, peg
      4. 2142745Domain d2hlnd_: 2hln D: [165142]
        automated match to d1hg0a_
        complexed with glu, peg
      5. 2142746Domain d2hlne_: 2hln E: [165143]
        automated match to d1hg0a_
        complexed with glu, peg
      6. 2142747Domain d2hlnf_: 2hln F: [165144]
        automated match to d1hg0a_
        complexed with glu, peg
      7. 2142748Domain d2hlng_: 2hln G: [165145]
        automated match to d1hg0a_
        complexed with glu, peg
      8. 2142749Domain d2hlnh_: 2hln H: [165146]
        automated match to d1hg0a_
        complexed with glu, peg
      9. 2142750Domain d2hlni_: 2hln I: [165147]
        automated match to d1hg0a_
        complexed with glu, peg
      10. 2142751Domain d2hlnj_: 2hln J: [165148]
        automated match to d1hg0a_
        complexed with glu, peg
      11. 2142752Domain d2hlnk_: 2hln K: [165149]
        automated match to d1hg0a_
        complexed with glu, peg
      12. 2142753Domain d2hlnl_: 2hln L: [165150]
        automated match to d1hg0a_
        complexed with glu, peg
  5. 2142754Pectobacterium carotovorum [TaxId:554] [188521] (1 PDB entry)
  6. 2142763Yersinia pestis [TaxId:214092] [189425] (1 PDB entry)
  7. 2270579Dickeya chrysanthemi [TaxId:556] [313884] (5 PDB entries)
    1. Domains for 5f52:
      1. 2270580Domain d5f52a_: 5f52 A: [313885]
        automated match to d1hg0a_
        complexed with asp, peg
      2. 2270597Domain d5f52c_: 5f52 C: [313902]
        automated match to d1hg0a_
        complexed with asp, peg
      3. 2270646Domain d5f52b_: 5f52 B: [313951]
        automated match to d1hg0a_
        complexed with asp, peg
      4. 2270651Domain d5f52d_: 5f52 D: [313956]
        automated match to d1hg0a_
        complexed with asp, peg
    2. Domains for 5hw0:
      1. 2271499Domain d5hw0b_: 5hw0 B: [314800]
        automated match to d1hg0a_
        complexed with glu
      2. 2271500Domain d5hw0d_: 5hw0 D: [314801]
        automated match to d1hg0a_
        complexed with glu
      3. 2271626Domain d5hw0c_: 5hw0 C: [314927]
        automated match to d1hg0a_
        complexed with glu
      4. 2271692Domain d5hw0a_: 5hw0 A: [314993]
        automated match to d1hg0a_
        complexed with glu
    3. Domains for 5i3z:
      1. 2275981Domain d5i3zb_: 5i3z B: [319282]
        automated match to d1hg0a_
        complexed with asp; mutant
      2. 2276000Domain d5i3zd_: 5i3z D: [319301]
        automated match to d1hg0a_
        complexed with asp; mutant
      3. 2276017Domain d5i3za_: 5i3z A: [319318]
        automated match to d1hg0a_
        complexed with asp; mutant
      4. 2276018Domain d5i3zc_: 5i3z C: [319319]
        automated match to d1hg0a_
        complexed with asp; mutant
    4. Domains for 5i48:
      1. 2276006Domain d5i48b_: 5i48 B: [319307]
        automated match to d1hg0a_
        complexed with asp; mutant
      2. 2276011Domain d5i48d_: 5i48 D: [319312]
        automated match to d1hg0a_
        complexed with asp; mutant
      3. 2276024Domain d5i48a_: 5i48 A: [319325]
        automated match to d1hg0a_
        complexed with asp; mutant
      4. 2276036Domain d5i48c_: 5i48 C: [319337]
        automated match to d1hg0a_
        complexed with asp; mutant
    5. Domains for 5i4b:
      1. 2276016Domain d5i4bb_: 5i4b B: [319317]
        automated match to d1hg0a_
        complexed with asp; mutant
      2. 2276026Domain d5i4ba_: 5i4b A: [319327]
        automated match to d1hg0a_
        complexed with asp; mutant
      3. 2276048Domain d5i4bc_: 5i4b C: [319349]
        automated match to d1hg0a_
        complexed with asp; mutant
  8. 2289049Wolinella succinogenes [TaxId:273121] [332350] (1 PDB entry)

More info for Protein automated matches from c.88.1.1: Glutaminase/Asparaginase

Timeline for Protein automated matches from c.88.1.1: Glutaminase/Asparaginase: