SCOPe Funding Alert: SCOPe support from the NIH ended in April 2016. John-Marc Chandonia is the primary maintainer and has continued to develop SCOPe using vacation time. Three proposals to the NIH for continued funding have been unsuccessful. If our current NIH proposal is not funded, SCOPe will shut down permanently in Summer 2017 as Dr. Chandonia will need to seek a new position.

Lineage for Protein: automated matches

  1. Root: SCOPe 2.06
  2. 2152203Class d: Alpha and beta proteins (a+b) [53931] (385 folds)
  3. 2211128Fold d.177: FAH [56528] (1 superfamily)
    unusual fold; contains 3 layers of beta-sheet structure
  4. 2211129Superfamily d.177.1: FAH [56529] (2 families) (S)
  5. 2211213Family d.177.1.0: automated matches [191367] (1 protein)
    not a true family
  6. 2211214Protein automated matches [190444] (4 species)
    not a true protein

Species:

  1. 2211215Burkholderia cenocepacia [TaxId:216591] [257691] (1 PDB entry)
  2. 2211220Escherichia coli [TaxId:562] [187351] (3 PDB entries)
    1. Domains for 2eb4:
      1. 2211221Domain d2eb4a_: 2eb4 A: [163931]
        automated match to d1sv6a_
        complexed with na, scn
      2. 2211222Domain d2eb4b_: 2eb4 B: [163932]
        automated match to d1sv6a_
        complexed with na, scn
      3. 2211223Domain d2eb4c_: 2eb4 C: [163933]
        automated match to d1sv6a_
        complexed with na, scn
      4. 2211224Domain d2eb4d_: 2eb4 D: [163934]
        automated match to d1sv6a_
        complexed with na, scn
      5. 2211225Domain d2eb4e_: 2eb4 E: [163935]
        automated match to d1sv6a_
        complexed with na, scn
    2. Domains for 2eb5:
      1. 2211231Domain d2eb5a_: 2eb5 A: [163936]
        automated match to d1sv6a_
        complexed with mg, oxl, scn
      2. 2211232Domain d2eb5b_: 2eb5 B: [163937]
        automated match to d1sv6a_
        complexed with mg, oxl, scn
      3. 2211233Domain d2eb5c_: 2eb5 C: [163938]
        automated match to d1sv6a_
        complexed with mg, oxl, scn
      4. 2211234Domain d2eb5d_: 2eb5 D: [163939]
        automated match to d1sv6a_
        complexed with mg, oxl, scn
      5. 2211235Domain d2eb5e_: 2eb5 E: [163940]
        automated match to d1sv6a_
        complexed with mg, oxl, scn
    3. Domains for 2eb6:
      1. 2211226Domain d2eb6a_: 2eb6 A: [163941]
        automated match to d1sv6a_
        complexed with mg
      2. 2211227Domain d2eb6b_: 2eb6 B: [163942]
        automated match to d1sv6a_
        complexed with mg
      3. 2211228Domain d2eb6c_: 2eb6 C: [163943]
        automated match to d1sv6a_
        complexed with mg
      4. 2211229Domain d2eb6d_: 2eb6 D: [163944]
        automated match to d1sv6a_
        complexed with mg
      5. 2211230Domain d2eb6e_: 2eb6 E: [163945]
        automated match to d1sv6a_
        complexed with mg
  3. 2273580Pseudomonas putida [TaxId:303] [316881] (6 PDB entries)
    1. Domain for 5d2f:
    2. Domain for 5d2g:
    3. Domain for 5d2h:
    4. Domains for 5d2i:
      1. 2273581Domain d5d2ib_: 5d2i B: [316882]
        automated match to d2eb4a_
        complexed with act, ca, edo
      2. 2273621Domain d5d2ia_: 5d2i A: [316922]
        automated match to d2eb4a_
        complexed with act, ca, edo
    5. Domains for 5d2j:
      1. 2273584Domain d5d2ja_: 5d2j A: [316885]
        automated match to d2eb4a_
        complexed with 0l1, act, edo, mg
      2. 2273638Domain d5d2jb_: 5d2j B: [316939]
        automated match to d2eb4a_
        complexed with 0l1, act, edo, mg
    6. Domains for 5d2k:
      1. 2273616Domain d5d2ka_: 5d2k A: [316917]
        automated match to d2eb4a_
        complexed with act, edo, mg, oog
      2. 2273622Domain d5d2kb_: 5d2k B: [316923]
        automated match to d2eb4a_
        complexed with act, edo, mg, oog
  4. 2286236Burkholderia xenovorans [TaxId:266265] [329537] (1 PDB entry)

More info for Protein automated matches from d.177.1.0: automated matches

Timeline for Protein automated matches from d.177.1.0: automated matches: