SCOPe Funding Alert: SCOPe support from the NIH ended in April 2016. John-Marc Chandonia is the primary maintainer and has continued to develop SCOPe using vacation time. Three proposals to the NIH for continued funding have been unsuccessful. If our current NIH proposal is not funded, SCOPe will shut down permanently in Summer 2017 as Dr. Chandonia will need to seek a new position.

Lineage for Protein: automated matches

  1. Root: SCOPe 2.06
  2. 2078559Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2101600Fold c.23: Flavodoxin-like [52171] (15 superfamilies)
    3 layers, a/b/a; parallel beta-sheet of 5 strand, order 21345
  4. 2102350Superfamily c.23.5: Flavoproteins [52218] (9 families) (S)
  5. 2102351Family c.23.5.1: Flavodoxin-related [52219] (6 protein domains)
    binds FMN
  6. 2102463Protein automated matches [190443] (6 species)
    not a true protein

Species:

  1. 2102464Anabaena sp. [TaxId:1168] [188238] (5 PDB entries)
    1. Domain for 2kqu:
    2. Domains for 2v5u:
      1. 2102467Domain d2v5ua_: 2v5u A: [168353]
        automated match to d1obva_
        complexed with fmn
      2. 2102468Domain d2v5ub_: 2v5u B: [168354]
        automated match to d1obva_
        complexed with fmn
    3. Domains for 3esx:
      1. 2102469Domain d3esxa_: 3esx A: [175201]
        automated match to d1rcfa_
        complexed with ca, cl, fmn
      2. 2102470Domain d3esxb_: 3esx B: [175202]
        automated match to d1rcfa_
        complexed with ca, cl, fmn
    4. Domains for 3esy:
      1. 2102471Domain d3esya_: 3esy A: [175203]
        automated match to d1rcfa_
        complexed with fmn, gol
      2. 2102472Domain d3esyb_: 3esy B: [175204]
        automated match to d1rcfa_
        complexed with fmn, gol
      3. 2102473Domain d3esyc_: 3esy C: [175205]
        automated match to d1rcfa_
        complexed with fmn, gol
      4. 2102474Domain d3esyd_: 3esy D: [175206]
        automated match to d1rcfa_
        complexed with fmn, gol
    5. Domains for 3esz:
      1. 2102465Domain d3esza_: 3esz A: [175207]
        automated match to d1rcfa_
        complexed with fmn, gol, mg
      2. 2102466Domain d3eszb_: 3esz B: [175208]
        automated match to d1rcfa_
        complexed with fmn, gol, mg
  2. 2102476Desulfovibrio gigas [TaxId:879] [194059] (1 PDB entry)
  3. 2102479Helicobacter pylori [TaxId:210] [187348] (2 PDB entries)
    1. Domain for 2bmv:
    2. Domains for 2w5u:
      1. 2102481Domain d2w5ua_: 2w5u A: [169074]
        automated match to d1fuea_
        complexed with fmn, ic3
      2. 2102482Domain d2w5ub_: 2w5u B: [169075]
        automated match to d1fuea_
        complexed with fmn, ic3
  4. 2102483Rhodobacter capsulatus [TaxId:1061] [189322] (1 PDB entry)
  5. 2293867Azotobacter vinelandii [TaxId:354] [337168] (1 PDB entry)
  6. 2293885Nostoc sp. [TaxId:1168] [337186] (1 PDB entry)

More info for Protein automated matches from c.23.5.1: Flavodoxin-related

Timeline for Protein automated matches from c.23.5.1: Flavodoxin-related: