Lineage for Protein: automated matches

  1. Root: SCOPe 2.08
  2. 2739516Class b: All beta proteins [48724] (180 folds)
  3. 2794132Fold b.45: Split barrel-like [50474] (3 superfamilies)
    barrel; n=6, S=10; greek-key
  4. 2794133Superfamily b.45.1: FMN-binding split barrel [50475] (5 families) (S)
    related to the ferredoxin reductase-like FAD-binding domain
  5. 2794356Family b.45.1.0: automated matches [191365] (1 protein)
    not a true family
  6. 2794357Protein automated matches [190439] (22 species)
    not a true protein

Species:

  1. 2794358Anthrax bacillus (Bacillus anthracis) [TaxId:1392] [188602] (1 PDB entry)
  2. 2794360Arthrobacter sp. [TaxId:290399] [187341] (1 PDB entry)
  3. 2794362Azotobacter vinelandii [TaxId:322710] [368759] (1 PDB entry)
  4. 2794365Bacillus cereus [TaxId:226900] [188294] (1 PDB entry)
  5. 2794368Brucella melitensis [TaxId:224914] [236401] (1 PDB entry)
  6. 2794370Brucella melitensis [TaxId:29459] [188364] (1 PDB entry)
  7. 2794375Brucella melitensis [TaxId:359391] [189754] (2 PDB entries)
    1. Domain for 3u0i:
    2. Domain for 3u5w:
  8. 2794378Burkholderia cepacia [TaxId:292] [225782] (3 PDB entries)
    1. Domains for 3k86:
      1. 2794379Domain d3k86a_: 3k86 A: [212201]
        automated match to d3cb0c_
      2. 2794380Domain d3k86b_: 3k86 B: [212202]
        automated match to d3cb0c_
    2. Domains for 3k87:
      1. 2794381Domain d3k87a_: 3k87 A: [212203]
        automated match to d3cb0c_
        complexed with fad
      2. 2794382Domain d3k87b_: 3k87 B: [212204]
        automated match to d3cb0c_
        complexed with fad
    3. Domains for 3k88:
      1. 2794383Domain d3k88a_: 3k88 A: [212205]
        automated match to d3cb0c_
        complexed with fad, nad
      2. 2794384Domain d3k88b_: 3k88 B: [212206]
        automated match to d3cb0c_
        complexed with fad, nad
  9. 2794385Haemophilus somnus [TaxId:205914] [188012] (1 PDB entry)
  10. 2794387Mycobacterium avium [TaxId:243243] [271156] (1 PDB entry)
  11. 2794390Mycobacterium goodii [TaxId:134601] [189785] (1 PDB entry)
  12. 2794393Mycobacterium smegmatis [TaxId:246196] [278309] (2 PDB entries)
    1. Domains for 4ybn:
      1. 2794394Domain d4ybna_: 4ybn A: [278464]
        automated match to d2fura1
        complexed with act, fad, hem, ni, so4
      2. 2794395Domain d4ybnb_: 4ybn B: [278463]
        automated match to d2fura1
        complexed with act, fad, hem, ni, so4
    2. Domains for 5bnc:
      1. 2794396Domain d5bnca_: 5bnc A: [278311]
        automated match to d2arzb_
        complexed with epe, mg, ni, so4
      2. 2794397Domain d5bncb_: 5bnc B: [278312]
        automated match to d2arzb_
        complexed with epe, mg, ni, so4
  13. 2794398Mycobacterium thermoresistibile [TaxId:1078020] [267858] (1 PDB entry)
  14. 2794403Rickettsia felis [TaxId:315456] [226703] (1 PDB entry)
  15. 2794408Streptomyces globisporus [TaxId:1908] [256294] (2 PDB entries)
    1. Domains for 4hx6:
      1. 2794411Domain d4hx6a1: 4hx6 A:1-175 [262709]
        Other proteins in same PDB: d4hx6a2, d4hx6c2, d4hx6d2, d4hx6f2
        automated match to d4r82a_
        complexed with act, so4
      2. 2794412Domain d4hx6b_: 4hx6 B: [252535]
        Other proteins in same PDB: d4hx6a2, d4hx6c2, d4hx6d2, d4hx6f2
        automated match to d3pfta_
        complexed with act, so4
      3. 2794413Domain d4hx6c1: 4hx6 C:1-178 [262710]
        Other proteins in same PDB: d4hx6a2, d4hx6c2, d4hx6d2, d4hx6f2
        automated match to d4r82a_
        complexed with act, so4
      4. 2794414Domain d4hx6d1: 4hx6 D:1-175 [262711]
        Other proteins in same PDB: d4hx6a2, d4hx6c2, d4hx6d2, d4hx6f2
        automated match to d4r82a_
        complexed with act, so4
      5. 2794415Domain d4hx6e_: 4hx6 E: [262712]
        Other proteins in same PDB: d4hx6a2, d4hx6c2, d4hx6d2, d4hx6f2
        automated match to d4r82a_
        complexed with act, so4
      6. 2794416Domain d4hx6f1: 4hx6 F:1-175 [262713]
        Other proteins in same PDB: d4hx6a2, d4hx6c2, d4hx6d2, d4hx6f2
        automated match to d4r82a_
        complexed with act, so4
      7. 2794417Domain d4hx6g_: 4hx6 G: [252536]
        Other proteins in same PDB: d4hx6a2, d4hx6c2, d4hx6d2, d4hx6f2
        automated match to d3pfta_
        complexed with act, so4
      8. 2794418Domain d4hx6h_: 4hx6 H: [252537]
        Other proteins in same PDB: d4hx6a2, d4hx6c2, d4hx6d2, d4hx6f2
        automated match to d3pfta_
        complexed with act, so4
    2. Domains for 4r82:
      1. 2794409Domain d4r82a_: 4r82 A: [260009]
        automated match to d4hx6g_
        complexed with act, ca, cl, fad, mg, nad
      2. 2794410Domain d4r82b_: 4r82 B: [263827]
        automated match to d4r82a_
        complexed with act, ca, cl, fad, mg, nad
  16. 2794419Sulfolobus tokodaii [TaxId:273063] [225074] (3 PDB entries)
    1. Domain for 2d36:
    2. Domain for 2d37:
    3. Domain for 2d38:
  17. 2794423Thale cress (Arabidopsis thaliana) [TaxId:3702] [397197] (2 PDB entries)
    1. Domains for 6m09:
      1. 2794424Domain d6m09a_: 6m09 A: [397296]
        automated match to d5bncb_
      2. 2794425Domain d6m09b_: 6m09 B: [397290]
        automated match to d5bncb_
      3. 2794426Domain d6m09c_: 6m09 C: [397277]
        automated match to d5bncb_
      4. 2794427Domain d6m09d_: 6m09 D: [397244]
        automated match to d5bncb_
    2. Domains for 6m0a:
      1. 2794428Domain d6m0aa_: 6m0a A: [397212]
        automated match to d5bncb_
        complexed with azi, hem
      2. 2794429Domain d6m0ab_: 6m0a B: [397198]
        automated match to d5bncb_
        complexed with azi, hem
      3. 2794430Domain d6m0ac_: 6m0a C: [397199]
        automated match to d5bncb_
        complexed with azi, hem
      4. 2794431Domain d6m0ad_: 6m0a D: [397243]
        automated match to d5bncb_
        complexed with azi, hem
  18. 2794432Thermus thermophilus HB8 [TaxId:300852] [225396] (3 PDB entries)
    1. Domains for 2ecr:
      1. 2794435Domain d2ecra_: 2ecr A: [204108]
        automated match to d3cb0a_
      2. 2794436Domain d2ecrb_: 2ecr B: [204109]
        automated match to d3cb0a_
    2. Domains for 2ecu:
      1. 2794433Domain d2ecua_: 2ecu A: [204110]
        automated match to d3cb0a_
        complexed with 12p, 1pg
      2. 2794434Domain d2ecub_: 2ecu B: [204111]
        automated match to d3cb0a_
        complexed with 12p, 1pg
    3. Domains for 2ed4:
      1. 2794437Domain d2ed4a_: 2ed4 A: [204112]
        automated match to d3cb0a_
        complexed with fad, nad
      2. 2794438Domain d2ed4b_: 2ed4 B: [204113]
        automated match to d3cb0a_
        complexed with fad, nad
  19. 2794439Uncultured bacterium [TaxId:77133] [318898] (1 PDB entry)
  20. 2794448Vibrio cholerae [TaxId:345073] [193560] (1 PDB entry)
  21. 2794453Xanthomonas axonopodis [TaxId:92829] [256113] (2 PDB entries)
    1. Domains for 3u34:
      1. 2794458Domain d3u34a_: 3u34 A: [250075]
        automated match to d3dmbb_
        complexed with pge
      2. 2794459Domain d3u34b_: 3u34 B: [250076]
        automated match to d3dmbb_
        complexed with pge
      3. 2794460Domain d3u34c_: 3u34 C: [250077]
        automated match to d3dmbb_
        complexed with pge
      4. 2794461Domain d3u34d_: 3u34 D: [250078]
        automated match to d3dmbb_
        complexed with pge
    2. Domains for 3u35:
      1. 2794454Domain d3u35a_: 3u35 A: [250079]
        automated match to d3dmbb_
        complexed with pge
      2. 2794455Domain d3u35b_: 3u35 B: [250080]
        automated match to d3dmbb_
        complexed with pge
      3. 2794456Domain d3u35c_: 3u35 C: [250081]
        automated match to d3dmbb_
        complexed with pge
      4. 2794457Domain d3u35d_: 3u35 D: [250082]
        automated match to d3dmbb_
        complexed with pge
  22. 2794462Xanthomonas campestris [TaxId:340] [225517] (1 PDB entry)

More info for Protein automated matches from b.45.1.0: automated matches

Timeline for Protein automated matches from b.45.1.0: automated matches: