Lineage for Protein: automated matches

  1. Root: SCOPe 2.03
  2. 1253684Class a: All alpha proteins [46456] (284 folds)
  3. 1264121Fold a.25: Ferritin-like [47239] (6 superfamilies)
    core: 4 helices; bundle, closed, left-handed twist; 1 crossover connection
  4. 1264122Superfamily a.25.1: Ferritin-like [47240] (10 families) (S)
    contains bimetal-ion centre in the middle of the bundle
  5. 1265471Family a.25.1.2: Ribonucleotide reductase-like [47253] (9 proteins)
  6. 1265763Protein automated matches [190435] (8 species)
    not a true protein

Species:

  1. 1265764Castor bean (Ricinus communis) [TaxId:3988] [187330] (1 PDB entry)
  2. 1265771Chlamydia trachomatis [TaxId:813] [225098] (1 PDB entry)
  3. 1265773Escherichia coli [TaxId:511145] [189613] (6 PDB entries)
    1. Domains for 3pvr:
      1. 1265776Domain d3pvrb_: 3pvr B: [184015]
        automated match to d1otka_
        complexed with byc, gol
      2. 1265777Domain d3pvrc_: 3pvr C: [184016]
        automated match to d1otka_
        complexed with byc, gol
    2. Domains for 3pvt:
      1. 1265774Domain d3pvtb_: 3pvt B: [184017]
        automated match to d1otka_
        complexed with 3hc, gol
      2. 1265775Domain d3pvtc_: 3pvt C: [184018]
        automated match to d1otka_
        complexed with 3hc, gol
    3. Domains for 3pvy:
      1. 1265778Domain d3pvyb_: 3pvy B: [184023]
        automated match to d1otka_
        complexed with coa, gol
      2. 1265779Domain d3pvyc_: 3pvy C: [184024]
        automated match to d1otka_
        complexed with coa, gol
    4. Domains for 3pw1:
      1. 1265780Domain d3pw1b_: 3pw1 B: [184025]
        automated match to d1otka_
        complexed with faq, gol
      2. 1265781Domain d3pw1c_: 3pw1 C: [184026]
        automated match to d1otka_
        complexed with faq, gol
    5. Domains for 3pw8:
      1. 1265790Domain d3pw8a_: 3pw8 A: [184027]
        automated match to d1otka_
        complexed with aco
      2. 1265791Domain d3pw8b_: 3pw8 B: [184028]
        automated match to d1otka_
        complexed with aco
    6. Domains for 3pwq:
      1. 1265782Domain d3pwqa_: 3pwq A: [184043]
        automated match to d1otka_
      2. 1265783Domain d3pwqb_: 3pwq B: [184044]
        automated match to d1otka_
      3. 1265784Domain d3pwqe_: 3pwq E: [184045]
        automated match to d1otka_
      4. 1265785Domain d3pwqg_: 3pwq G: [184046]
        automated match to d1otka_
      5. 1265786Domain d3pwqi_: 3pwq I: [184047]
        automated match to d1otka_
      6. 1265787Domain d3pwqj_: 3pwq J: [184048]
        automated match to d1otka_
      7. 1265788Domain d3pwqk_: 3pwq K: [184049]
        automated match to d1otka_
      8. 1265789Domain d3pwqr_: 3pwq R: [184050]
        automated match to d1otka_
  4. 1265792Hedera helix [TaxId:4052] [187347] (1 PDB entry)
  5. 1265795Human (Homo sapiens) [TaxId:9606] [193902] (5 PDB entries)
    1. Domains for 3olj:
      1. 1265796Domain d3olja_: 3olj A: [200095]
        automated match to d3oljd_
        complexed with na
      2. 1265797Domain d3oljb_: 3olj B: [200096]
        automated match to d3oljd_
        complexed with na
      3. 1265798Domain d3oljc_: 3olj C: [200097]
        automated match to d3oljd_
        complexed with na
      4. 1265799Domain d3oljd_: 3olj D: [196199]
        automated match to d2uw2a1
        complexed with na
    2. Domains for 3vpm:
      1. 1265806Domain d3vpma_: 3vpm A: [201251]
        automated match to d3vpmb_
        complexed with fe, mg; mutant
      2. 1265807Domain d3vpmb_: 3vpm B: [193903]
        automated match to d2uw2a1
        complexed with fe, mg; mutant
    3. Domains for 3vpn:
      1. 1265802Domain d3vpna_: 3vpn A: [201252]
        automated match to d3vpnb_
        complexed with fe, mg; mutant
      2. 1265803Domain d3vpnb_: 3vpn B: [193905]
        automated match to d2uw2a1
        complexed with fe, mg; mutant
    4. Domains for 3vpo:
      1. 1265804Domain d3vpoa_: 3vpo A: [201253]
        automated match to d3vpob_
        complexed with fe, mg; mutant
      2. 1265805Domain d3vpob_: 3vpo B: [193904]
        automated match to d2uw2a1
        complexed with fe, mg; mutant
    5. Domains for 4djn:
      1. 1265800Domain d4djna_: 4djn A: [195471]
        automated match to d2uw2a1
        complexed with edo, so4
      2. 1265801Domain d4djnb_: 4djn B: [195470]
        automated match to d2uw2a1
        complexed with edo, so4
  6. 1265808Methylococcus capsulatus [TaxId:243233] [226584] (1 PDB entry)
  7. 1265813Plasmodium vivax [TaxId:5855] [226817] (1 PDB entry)
  8. 1265816Pseudomonas mendocina [TaxId:300] [188695] (14 PDB entries)
    1. Domains for 3dhg:
      1. 1265823Domain d3dhga_: 3dhg A: [173940]
        Other proteins in same PDB: d3dhgc_, d3dhgf_
        automated match to d1t0qa_
        complexed with azi, ca, fe
      2. 1265824Domain d3dhgd_: 3dhg D: [173942]
        Other proteins in same PDB: d3dhgc_, d3dhgf_
        automated match to d1t0qa_
        complexed with azi, ca, fe
    2. Domain for 3dhh:
    3. Domain for 3dhi:
    4. Domain for 3ge3:
    5. Domains for 3ge8:
      1. 1265833Domain d3ge8a_: 3ge8 A: [176570]
        Other proteins in same PDB: d3ge8c_, d3ge8e_, d3ge8g_, d3ge8h_
        automated match to d1t0qa_
        complexed with act, fe
      2. 1265834Domain d3ge8d_: 3ge8 D: [176572]
        Other proteins in same PDB: d3ge8c_, d3ge8e_, d3ge8g_, d3ge8h_
        automated match to d1t0qa_
        complexed with act, fe
    6. Domain for 3i5j:
    7. Domain for 3i63:
    8. Domain for 3q14:
    9. Domain for 3q2a:
    10. Domains for 3q3m:
      1. 1265818Domain d3q3ma_: 3q3m A: [184186]
        Other proteins in same PDB: d3q3mc_, d3q3me_, d3q3mg_, d3q3mh_
        automated match to d1t0qa_
        complexed with fe, z82
      2. 1265819Domain d3q3md_: 3q3m D: [184188]
        Other proteins in same PDB: d3q3mc_, d3q3me_, d3q3mg_, d3q3mh_
        automated match to d1t0qa_
        complexed with fe, z82
    11. Domain for 3q3n:
    12. Domain for 3q3o:
    13. Domain for 3ri7:
    14. Domains for 3rmk:
      1. 1265825Domain d3rmka_: 3rmk A: [196049]
        Other proteins in same PDB: d3rmkc_, d3rmkf_
        automated match to d3dhgd_
        complexed with bml, ca, fe, pge
      2. 1265826Domain d3rmkd_: 3rmk D: [200499]
        Other proteins in same PDB: d3rmkc_, d3rmkf_
        automated match to d3rmka_
        complexed with bml, ca, fe, pge

More info for Protein automated matches from a.25.1.2: Ribonucleotide reductase-like

Timeline for Protein automated matches from a.25.1.2: Ribonucleotide reductase-like: