Lineage for Protein: automated matches

  1. Root: SCOPe 2.07
  2. 2413226Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2490427Fold c.101: Undecaprenyl diphosphate synthase [64004] (1 superfamily)
    3 layers: a/b/a; parallel beta-sheet of 6 strands, order 342156
  4. 2490428Superfamily c.101.1: Undecaprenyl diphosphate synthase [64005] (2 families) (S)
    the sheet topology is similar to those of the N-terminal domain of phosphoglycerate kinase and carbamate kinase
  5. 2490494Family c.101.1.0: automated matches [191361] (1 protein)
    not a true family
  6. 2490495Protein automated matches [190431] (8 species)
    not a true protein

Species:

  1. 2490496Campylobacter jejuni [TaxId:197] [189831] (1 PDB entry)
  2. 2490499Helicobacter pylori [TaxId:210] [187325] (2 PDB entries)
    1. Domains for 2d2r:
      1. 2490500Domain d2d2ra_: 2d2r A: [163563]
        automated match to d1uehb_
      2. 2490501Domain d2d2rb_: 2d2r B: [163564]
        automated match to d1uehb_
    2. Domains for 2dtn:
      1. 2490502Domain d2dtna_: 2dtn A: [163691]
        automated match to d1uehb_
        complexed with dpo
      2. 2490503Domain d2dtnb_: 2dtn B: [163692]
        automated match to d1uehb_
        complexed with dpo
  3. 2490504Lavandula lanata [TaxId:39330] [315377] (3 PDB entries)
    1. Domain for 5hc6:
    2. Domain for 5hc7:
    3. Domain for 5hc8:
  4. 2490508Mycobacterium tuberculosis [TaxId:1773] [188255] (3 PDB entries)
    1. Domains for 2vfw:
      1. 2490513Domain d2vfwa_: 2vfw A: [168522]
        automated match to d1f75a_
        complexed with so4
      2. 2490514Domain d2vfwb_: 2vfw B: [168523]
        automated match to d1f75a_
        complexed with so4
    2. Domains for 2vg0:
      1. 2490511Domain d2vg0a_: 2vg0 A: [168536]
        automated match to d1f75a_
        complexed with gol, gpp
      2. 2490512Domain d2vg0b_: 2vg0 B: [168537]
        automated match to d1f75a_
        complexed with gol, gpp
    3. Domains for 2vg1:
      1. 2490509Domain d2vg1a_: 2vg1 A: [168538]
        automated match to d1f75a_
        complexed with fpp, gol, po4
      2. 2490510Domain d2vg1b_: 2vg1 B: [168539]
        automated match to d1f75a_
        complexed with fpp, gol, po4
  5. 2490515Solanum habrochaites [TaxId:62890] [332525] (5 PDB entries)
    1. Domain for 5hxn:
    2. Domain for 5hxo:
    3. Domains for 5hxp:
      1. 2490518Domain d5hxpa_: 5hxp A: [332589]
        automated match to d4h8ea_
        complexed with ipr, mg, o4b; mutant
      2. 2490519Domain d5hxpc_: 5hxp C: [332570]
        automated match to d4h8ea_
        complexed with ipr, mg, o4b; mutant
    4. Domains for 5hxq:
      1. 2490516Domain d5hxqa_: 5hxq A: [332535]
        automated match to d4h8ea_
        complexed with dst, o4b; mutant
      2. 2490517Domain d5hxqc_: 5hxq C: [332537]
        automated match to d4h8ea_
        complexed with dst, o4b; mutant
    5. Domains for 5hxt:
      1. 2490522Domain d5hxta_: 5hxt A: [332571]
        automated match to d4h8ea_
        complexed with dst, ipr, mg, o4b; mutant
      2. 2490523Domain d5hxtb_: 5hxt B: [332527]
        automated match to d4h8ea_
        complexed with dst, ipr, mg, o4b; mutant
  6. 2490524Streptococcus pneumoniae [TaxId:170187] [319781] (2 PDB entries)
    1. Domains for 5kh2:
      1. 2490525Domain d5kh2a_: 5kh2 A: [319786]
        automated match to d4u82a_
      2. 2490526Domain d5kh2b_: 5kh2 B: [319813]
        automated match to d4u82a_
      3. 2490527Domain d5kh2c_: 5kh2 C: [319811]
        automated match to d4u82a_
      4. 2490528Domain d5kh2d_: 5kh2 D: [319836]
        automated match to d4u82a_
    2. Domains for 5kh5:
      1. 2490529Domain d5kh5a_: 5kh5 A: [319812]
        automated match to d4u82a_
        complexed with 6tc
      2. 2490530Domain d5kh5b_: 5kh5 B: [319782]
        automated match to d4u82a_
        complexed with 6tc
  7. 2490531Streptococcus pneumoniae [TaxId:171101] [260378] (2 PDB entries)
    1. Domains for 4q9m:
      1. 2490532Domain d4q9ma_: 4q9m A: [267278]
        automated match to d4q9oa_
        complexed with 2zw, cd, fpp
      2. 2490533Domain d4q9mb_: 4q9m B: [267279]
        automated match to d4q9oa_
        complexed with 2zw, cd, fpp
    2. Domains for 4q9o:
      1. 2490534Domain d4q9oa1: 4q9o A:10-246 [260379]
        Other proteins in same PDB: d4q9oa2
        automated match to d4h8ea_
        complexed with 2zw, so4
      2. 2490535Domain d4q9ob_: 4q9o B: [263660]
        Other proteins in same PDB: d4q9oa2
        automated match to d4q9oa_
        complexed with 2zw, so4
  8. 3048429Streptomyces sp. [TaxId:1136432] [348491] (5 PDB entries)
    1. Domains for 5xk3:
      1. 3048564Domain d5xk3d1: 5xk3 D:1-209 [348626]
        Other proteins in same PDB: d5xk3a2, d5xk3b2, d5xk3d2
        automated match to d5hxpa_
        complexed with so4
      2. 3048566Domain d5xk3a1: 5xk3 A:1-216 [348628]
        Other proteins in same PDB: d5xk3a2, d5xk3b2, d5xk3d2
        automated match to d5hxpa_
        complexed with so4
      3. 3048621Domain d5xk3c_: 5xk3 C: [348683]
        Other proteins in same PDB: d5xk3a2, d5xk3b2, d5xk3d2
        automated match to d5hxpa_
        complexed with so4
      4. 3048659Domain d5xk3b1: 5xk3 B:1-209 [348721]
        Other proteins in same PDB: d5xk3a2, d5xk3b2, d5xk3d2
        automated match to d5hxpa_
        complexed with so4
    2. Domains for 5xk6:
      1. 3048517Domain d5xk6c1: 5xk6 C:1-217 [348579]
        Other proteins in same PDB: d5xk6a2, d5xk6b2, d5xk6c2, d5xk6d2
        automated match to d5hxpa_
        complexed with mg, pop, so4
      2. 3048597Domain d5xk6a1: 5xk6 A:1-217 [348659]
        Other proteins in same PDB: d5xk6a2, d5xk6b2, d5xk6c2, d5xk6d2
        automated match to d5hxpa_
        complexed with mg, pop, so4
      3. 3048639Domain d5xk6b1: 5xk6 B:1-209 [348701]
        Other proteins in same PDB: d5xk6a2, d5xk6b2, d5xk6c2, d5xk6d2
        automated match to d5hxpa_
        complexed with mg, pop, so4
      4. 3048647Domain d5xk6d1: 5xk6 D:1-209 [348709]
        Other proteins in same PDB: d5xk6a2, d5xk6b2, d5xk6c2, d5xk6d2
        automated match to d5hxpa_
        complexed with mg, pop, so4
    3. Domains for 5xk7:
      1. 3048444Domain d5xk7d_: 5xk7 D: [348506]
        Other proteins in same PDB: d5xk7a2, d5xk7b2
        automated match to d5hxpa_
        complexed with dma, mes, mg, pop, so4
      2. 3048558Domain d5xk7a1: 5xk7 A:1-216 [348620]
        Other proteins in same PDB: d5xk7a2, d5xk7b2
        automated match to d5hxpa_
        complexed with dma, mes, mg, pop, so4
      3. 3048616Domain d5xk7b1: 5xk7 B:1-209 [348678]
        Other proteins in same PDB: d5xk7a2, d5xk7b2
        automated match to d5hxpa_
        complexed with dma, mes, mg, pop, so4
      4. 3048802Domain d5xk7c_: 5xk7 C: [348864]
        Other proteins in same PDB: d5xk7a2, d5xk7b2
        automated match to d5hxpa_
        complexed with dma, mes, mg, pop, so4
    4. Domains for 5xk8:
      1. 3048430Domain d5xk8b_: 5xk8 B: [348492]
        Other proteins in same PDB: d5xk8a2, d5xk8c2
        automated match to d5hxpa_
        complexed with gpp, mg
      2. 3048488Domain d5xk8a1: 5xk8 A:1-217 [348550]
        Other proteins in same PDB: d5xk8a2, d5xk8c2
        automated match to d5hxpa_
        complexed with gpp, mg
      3. 3048491Domain d5xk8c1: 5xk8 C:1-210 [348553]
        Other proteins in same PDB: d5xk8a2, d5xk8c2
        automated match to d5hxpa_
        complexed with gpp, mg
      4. 3048684Domain d5xk8d_: 5xk8 D: [348746]
        Other proteins in same PDB: d5xk8a2, d5xk8c2
        automated match to d5hxpa_
        complexed with gpp, mg
    5. Domains for 5xk9:
      1. 3048454Domain d5xk9b1: 5xk9 B:1-208 [348516]
        Other proteins in same PDB: d5xk9b2, d5xk9c2, d5xk9f2, d5xk9g2
        automated match to d5hxpa_
        complexed with dma, gst, mg
      2. 3048476Domain d5xk9a_: 5xk9 A: [348538]
        Other proteins in same PDB: d5xk9b2, d5xk9c2, d5xk9f2, d5xk9g2
        automated match to d5hxpa_
        complexed with dma, gst, mg
      3. 3048477Domain d5xk9f1: 5xk9 F:1-208 [348539]
        Other proteins in same PDB: d5xk9b2, d5xk9c2, d5xk9f2, d5xk9g2
        automated match to d5hxpa_
        complexed with dma, gst, mg
      4. 3048490Domain d5xk9h_: 5xk9 H: [348552]
        Other proteins in same PDB: d5xk9b2, d5xk9c2, d5xk9f2, d5xk9g2
        automated match to d5hxpa_
        complexed with dma, gst, mg
      5. 3048509Domain d5xk9e_: 5xk9 E: [348571]
        Other proteins in same PDB: d5xk9b2, d5xk9c2, d5xk9f2, d5xk9g2
        automated match to d5hxpa_
        complexed with dma, gst, mg
      6. 3048623Domain d5xk9g1: 5xk9 G:1-216 [348685]
        Other proteins in same PDB: d5xk9b2, d5xk9c2, d5xk9f2, d5xk9g2
        automated match to d5hxpa_
        complexed with dma, gst, mg
      7. 3048666Domain d5xk9c1: 5xk9 C:1-217 [348728]
        Other proteins in same PDB: d5xk9b2, d5xk9c2, d5xk9f2, d5xk9g2
        automated match to d5hxpa_
        complexed with dma, gst, mg
      8. 3048668Domain d5xk9d_: 5xk9 D: [348730]
        Other proteins in same PDB: d5xk9b2, d5xk9c2, d5xk9f2, d5xk9g2
        automated match to d5hxpa_
        complexed with dma, gst, mg

More info for Protein automated matches from c.101.1.0: automated matches

Timeline for Protein automated matches from c.101.1.0: automated matches: