SCOPe Funding Alert: SCOPe support from the NIH ended in April 2016. John-Marc Chandonia is the primary maintainer and has continued to develop SCOPe using vacation time. Three proposals to the NIH for continued funding have been unsuccessful. If our current NIH proposal is not funded, SCOPe will shut down permanently in Summer 2017 as Dr. Chandonia will need to seek a new position.

Lineage for Protein: automated matches

  1. Root: SCOPe 2.06
  2. 2078559Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2148252Fold c.101: Undecaprenyl diphosphate synthase [64004] (1 superfamily)
    3 layers: a/b/a; parallel beta-sheet of 6 strands, order 342156
  4. 2148253Superfamily c.101.1: Undecaprenyl diphosphate synthase [64005] (2 families) (S)
    the sheet topology is similar to those of the N-terminal domain of phosphoglycerate kinase and carbamate kinase
  5. 2148319Family c.101.1.0: automated matches [191361] (1 protein)
    not a true family
  6. 2148320Protein automated matches [190431] (7 species)
    not a true protein

Species:

  1. 2148321Campylobacter jejuni [TaxId:197] [189831] (1 PDB entry)
  2. 2148324Helicobacter pylori [TaxId:210] [187325] (2 PDB entries)
    1. Domains for 2d2r:
      1. 2148325Domain d2d2ra_: 2d2r A: [163563]
        automated match to d1uehb_
      2. 2148326Domain d2d2rb_: 2d2r B: [163564]
        automated match to d1uehb_
    2. Domains for 2dtn:
      1. 2148327Domain d2dtna_: 2dtn A: [163691]
        automated match to d1uehb_
        complexed with dpo
      2. 2148328Domain d2dtnb_: 2dtn B: [163692]
        automated match to d1uehb_
        complexed with dpo
  3. 2148329Mycobacterium tuberculosis [TaxId:1773] [188255] (3 PDB entries)
    1. Domains for 2vfw:
      1. 2148334Domain d2vfwa_: 2vfw A: [168522]
        automated match to d1f75a_
        complexed with so4
      2. 2148335Domain d2vfwb_: 2vfw B: [168523]
        automated match to d1f75a_
        complexed with so4
    2. Domains for 2vg0:
      1. 2148330Domain d2vg0a_: 2vg0 A: [168536]
        automated match to d1f75a_
        complexed with gol, gpp
      2. 2148331Domain d2vg0b_: 2vg0 B: [168537]
        automated match to d1f75a_
        complexed with gol, gpp
    3. Domains for 2vg1:
      1. 2148332Domain d2vg1a_: 2vg1 A: [168538]
        automated match to d1f75a_
        complexed with fpp, gol, po4
      2. 2148333Domain d2vg1b_: 2vg1 B: [168539]
        automated match to d1f75a_
        complexed with fpp, gol, po4
  4. 2148336Streptococcus pneumoniae [TaxId:171101] [260378] (2 PDB entries)
    1. Domains for 4q9m:
      1. 2148337Domain d4q9ma_: 4q9m A: [267278]
        automated match to d4q9oa_
        complexed with 2zw, cd, fpp
      2. 2148338Domain d4q9mb_: 4q9m B: [267279]
        automated match to d4q9oa_
        complexed with 2zw, cd, fpp
    2. Domains for 4q9o:
      1. 2148339Domain d4q9oa1: 4q9o A:10-246 [260379]
        Other proteins in same PDB: d4q9oa2
        automated match to d4h8ea_
        complexed with 2zw, so4
      2. 2148340Domain d4q9ob_: 4q9o B: [263660]
        Other proteins in same PDB: d4q9oa2
        automated match to d4q9oa_
        complexed with 2zw, so4
  5. 2272076Lavandula lanata [TaxId:39330] [315377] (3 PDB entries)
    1. Domain for 5hc6:
    2. Domain for 5hc7:
    3. Domain for 5hc8:
  6. 2276480Streptococcus pneumoniae [TaxId:170187] [319781] (2 PDB entries)
    1. Domains for 5kh2:
      1. 2276485Domain d5kh2a_: 5kh2 A: [319786]
        automated match to d4u82a_
      2. 2276510Domain d5kh2c_: 5kh2 C: [319811]
        automated match to d4u82a_
      3. 2276512Domain d5kh2b_: 5kh2 B: [319813]
        automated match to d4u82a_
      4. 2276535Domain d5kh2d_: 5kh2 D: [319836]
        automated match to d4u82a_
    2. Domains for 5kh5:
      1. 2276481Domain d5kh5b_: 5kh5 B: [319782]
        automated match to d4u82a_
        complexed with 6tc
      2. 2276511Domain d5kh5a_: 5kh5 A: [319812]
        automated match to d4u82a_
        complexed with 6tc
  7. 2289224Solanum habrochaites [TaxId:62890] [332525] (5 PDB entries)
    1. Domain for 5hxn:
    2. Domain for 5hxo:
    3. Domains for 5hxp:
      1. 2289269Domain d5hxpc_: 5hxp C: [332570]
        automated match to d4h8ea_
        complexed with ipr, mg, o4b; mutant
      2. 2289288Domain d5hxpa_: 5hxp A: [332589]
        automated match to d4h8ea_
        complexed with ipr, mg, o4b; mutant
    4. Domains for 5hxq:
      1. 2289234Domain d5hxqa_: 5hxq A: [332535]
        automated match to d4h8ea_
        complexed with dst, o4b; mutant
      2. 2289236Domain d5hxqc_: 5hxq C: [332537]
        automated match to d4h8ea_
        complexed with dst, o4b; mutant
    5. Domains for 5hxt:
      1. 2289226Domain d5hxtb_: 5hxt B: [332527]
        automated match to d4h8ea_
        complexed with dst, ipr, mg, o4b; mutant
      2. 2289270Domain d5hxta_: 5hxt A: [332571]
        automated match to d4h8ea_
        complexed with dst, ipr, mg, o4b; mutant

More info for Protein automated matches from c.101.1.0: automated matches

Timeline for Protein automated matches from c.101.1.0: automated matches: