Lineage for Protein: automated matches

  1. Root: SCOPe 2.06
  2. 2078559Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2148252Fold c.101: Undecaprenyl diphosphate synthase [64004] (1 superfamily)
    3 layers: a/b/a; parallel beta-sheet of 6 strands, order 342156
  4. 2148253Superfamily c.101.1: Undecaprenyl diphosphate synthase [64005] (2 families) (S)
    the sheet topology is similar to those of the N-terminal domain of phosphoglycerate kinase and carbamate kinase
  5. 2148319Family c.101.1.0: automated matches [191361] (1 protein)
    not a true family
  6. 2148320Protein automated matches [190431] (7 species)
    not a true protein

Species:

  1. 2148321Campylobacter jejuni [TaxId:197] [189831] (1 PDB entry)
  2. 2148324Helicobacter pylori [TaxId:210] [187325] (2 PDB entries)
    1. Domains for 2d2r:
      1. 2148325Domain d2d2ra_: 2d2r A: [163563]
        automated match to d1uehb_
      2. 2148326Domain d2d2rb_: 2d2r B: [163564]
        automated match to d1uehb_
    2. Domains for 2dtn:
      1. 2148327Domain d2dtna_: 2dtn A: [163691]
        automated match to d1uehb_
        complexed with dpo
      2. 2148328Domain d2dtnb_: 2dtn B: [163692]
        automated match to d1uehb_
        complexed with dpo
  3. 2148329Mycobacterium tuberculosis [TaxId:1773] [188255] (3 PDB entries)
    1. Domains for 2vfw:
      1. 2148334Domain d2vfwa_: 2vfw A: [168522]
        automated match to d1f75a_
        complexed with so4
      2. 2148335Domain d2vfwb_: 2vfw B: [168523]
        automated match to d1f75a_
        complexed with so4
    2. Domains for 2vg0:
      1. 2148330Domain d2vg0a_: 2vg0 A: [168536]
        automated match to d1f75a_
        complexed with gol, gpp
      2. 2148331Domain d2vg0b_: 2vg0 B: [168537]
        automated match to d1f75a_
        complexed with gol, gpp
    3. Domains for 2vg1:
      1. 2148332Domain d2vg1a_: 2vg1 A: [168538]
        automated match to d1f75a_
        complexed with fpp, gol, po4
      2. 2148333Domain d2vg1b_: 2vg1 B: [168539]
        automated match to d1f75a_
        complexed with fpp, gol, po4
  4. 2148336Streptococcus pneumoniae [TaxId:171101] [260378] (2 PDB entries)
    1. Domains for 4q9m:
      1. 2148337Domain d4q9ma_: 4q9m A: [267278]
        automated match to d4q9oa_
        complexed with 2zw, cd, fpp
      2. 2148338Domain d4q9mb_: 4q9m B: [267279]
        automated match to d4q9oa_
        complexed with 2zw, cd, fpp
    2. Domains for 4q9o:
      1. 2148339Domain d4q9oa1: 4q9o A:10-246 [260379]
        Other proteins in same PDB: d4q9oa2
        automated match to d4h8ea_
        complexed with 2zw, so4
      2. 2148340Domain d4q9ob_: 4q9o B: [263660]
        Other proteins in same PDB: d4q9oa2
        automated match to d4q9oa_
        complexed with 2zw, so4
  5. 2272076Lavandula lanata [TaxId:39330] [315377] (3 PDB entries)
    1. Domain for 5hc6:
    2. Domain for 5hc7:
    3. Domain for 5hc8:
  6. 2276480Streptococcus pneumoniae [TaxId:170187] [319781] (2 PDB entries)
    1. Domains for 5kh2:
      1. 2276485Domain d5kh2a_: 5kh2 A: [319786]
        automated match to d4u82a_
      2. 2276510Domain d5kh2c_: 5kh2 C: [319811]
        automated match to d4u82a_
      3. 2276512Domain d5kh2b_: 5kh2 B: [319813]
        automated match to d4u82a_
      4. 2276535Domain d5kh2d_: 5kh2 D: [319836]
        automated match to d4u82a_
    2. Domains for 5kh5:
      1. 2276481Domain d5kh5b_: 5kh5 B: [319782]
        automated match to d4u82a_
        complexed with 6tc
      2. 2276511Domain d5kh5a_: 5kh5 A: [319812]
        automated match to d4u82a_
        complexed with 6tc
  7. 2289224Solanum habrochaites [TaxId:62890] [332525] (5 PDB entries)
    1. Domain for 5hxn:
    2. Domain for 5hxo:
    3. Domains for 5hxp:
      1. 2289269Domain d5hxpc_: 5hxp C: [332570]
        automated match to d4h8ea_
        complexed with ipr, mg, o4b; mutant
      2. 2289288Domain d5hxpa_: 5hxp A: [332589]
        automated match to d4h8ea_
        complexed with ipr, mg, o4b; mutant
    4. Domains for 5hxq:
      1. 2289234Domain d5hxqa_: 5hxq A: [332535]
        automated match to d4h8ea_
        complexed with dst, o4b; mutant
      2. 2289236Domain d5hxqc_: 5hxq C: [332537]
        automated match to d4h8ea_
        complexed with dst, o4b; mutant
    5. Domains for 5hxt:
      1. 2289226Domain d5hxtb_: 5hxt B: [332527]
        automated match to d4h8ea_
        complexed with dst, ipr, mg, o4b; mutant
      2. 2289270Domain d5hxta_: 5hxt A: [332571]
        automated match to d4h8ea_
        complexed with dst, ipr, mg, o4b; mutant

More info for Protein automated matches from c.101.1.0: automated matches

Timeline for Protein automated matches from c.101.1.0: automated matches: