Lineage for Protein: automated matches

  1. Root: SCOPe 2.06
  2. 2243857Class e: Multi-domain proteins (alpha and beta) [56572] (69 folds)
  3. 2250688Fold e.76: Viral glycoprotein ectodomain-like [161007] (1 superfamily)
    complex fold; contains three rigid, mostly-beta domains and an alpha-helical region, acting as a conformatiomal switch ("fusion stalk")
  4. 2250689Superfamily e.76.1: Viral glycoprotein ectodomain-like [161008] (3 families) (S)
  5. 2250718Family e.76.1.2: Spike glycoprotein-like [161012] (2 proteins)
    Pfam PF00974; Rhabdovirus spike glycoprotein
  6. 2250722Protein automated matches [190430] (2 species)
    not a true protein

Species:

  1. 2250723Vesicular stomatitis indiana virus (strain mudd-summers) [TaxId:11279] [314899] (2 PDB entries)
    1. Domains for 5i2m:
      1. 2250724Domain d5i2ma_: 5i2m A: [314900]
        automated match to d2j6ja_
        complexed with ca, pe4
      2. 2250725Domain d5i2mb_: 5i2m B: [314981]
        automated match to d2j6ja_
        complexed with ca, pe4
      3. 2250726Domain d5i2mc_: 5i2m C: [315017]
        automated match to d2j6ja_
        complexed with ca, pe4
    2. Domain for 5i2s:
  2. 2250728Vesicular stomatitis indiana virus [TaxId:11277] [187323] (2 PDB entries)
    1. Domains for 2cmz:
      1. 2250729Domain d2cmzb_: 2cmz B: [146416]
        Other proteins in same PDB: d2cmza1
        automated match to d2cmza1
        complexed with ca, pe4
      2. 2250730Domain d2cmzc_: 2cmz C: [146417]
        Other proteins in same PDB: d2cmza1
        automated match to d2cmza1
        complexed with ca, pe4
    2. Domain for 2j6j:

More info for Protein automated matches from e.76.1.2: Spike glycoprotein-like

Timeline for Protein automated matches from e.76.1.2: Spike glycoprotein-like: