Lineage for Protein: automated matches

  1. Root: SCOPe 2.07
  2. 2494617Class d: Alpha and beta proteins (a+b) [53931] (388 folds)
  3. 2557740Fold d.165: Ribosome inactivating proteins (RIP) [56370] (1 superfamily)
    contains mixed beta-sheet
  4. 2557741Superfamily d.165.1: Ribosome inactivating proteins (RIP) [56371] (3 families) (S)
  5. 2557742Family d.165.1.1: Plant cytotoxins [56372] (18 proteins)
  6. 2557904Protein automated matches [190420] (8 species)
    not a true protein

Species:

  1. 2557905Abrus precatorius [TaxId:3816] [189038] (4 PDB entries)
    1. Domains for 2zr1:
      1. 2557906Domain d2zr1a_: 2zr1 A: [171445]
        Other proteins in same PDB: d2zr1b1, d2zr1b2, d2zr1d1, d2zr1d2
        automated match to d2q3na1
        complexed with nag, ndg
      2. 2557907Domain d2zr1c_: 2zr1 C: [171446]
        Other proteins in same PDB: d2zr1b1, d2zr1b2, d2zr1d1, d2zr1d2
        automated match to d2q3na1
        complexed with nag, ndg
    2. Domain for 5z37:
    3. Domain for 5z3i:
    4. Domain for 5z3j:
  2. 2557908Castor bean (Ricinus communis) [TaxId:3988] [188830] (11 PDB entries)
    1. Domain for 3ej5:
    2. Domain for 3px8:
    3. Domain for 3px9:
    4. Domains for 4lgp:
      1. 2557918Domain d4lgpa_: 4lgp A: [257021]
        Other proteins in same PDB: d4lgpb_, d4lgpd_
        automated match to d4hv3a_
        complexed with cl, edo
      2. 2557919Domain d4lgpc_: 4lgp C: [257835]
        Other proteins in same PDB: d4lgpb_, d4lgpd_
        automated match to d4hv3a_
        complexed with cl, edo
    5. Domain for 4lgr:
    6. Domain for 4lhj:
    7. Domains for 4lhq:
      1. 2557916Domain d4lhqa_: 4lhq A: [257025]
        Other proteins in same PDB: d4lhqb_, d4lhqd_
        automated match to d1br5a_
      2. 2557917Domain d4lhqc_: 4lhq C: [257837]
        Other proteins in same PDB: d4lhqb_, d4lhqd_
        automated match to d1br5a_
    8. Domain for 4q2v:
    9. Domain for 4z9k:
    10. Domain for 5ddz:
    11. Domain for 5u4m:
  3. 2557922Cushaw squash (Cucurbita moschata) [TaxId:3662] [188622] (1 PDB entry)
  4. 2557924European mistletoe (Viscum album) [TaxId:3972] [188629] (7 PDB entries)
    1. Domain for 2r9k:
    2. Domain for 2rg9:
    3. Domain for 3d7w:
    4. Domain for 3o5w:
    5. Domain for 4eb2:
    6. Domain for 4jkx:
    7. Domain for 6ely:
  5. 2557931Momordica balsamina [TaxId:3672] [189375] (73 PDB entries)
    1. Domain for 3mrw:
    2. Domain for 3mry:
    3. Domain for 3my6:
    4. Domain for 3n1d:
    5. Domain for 3n1n:
    6. Domain for 3n2d:
    7. Domain for 3n31:
    8. Domain for 3n3x:
    9. Domain for 3n5d:
    10. Domain for 3nfm:
    11. Domain for 3njs:
    12. Domain for 3nx9:
    13. Domain for 3q4p:
    14. Domains for 3q9b:
      1. 2557983Domain d3q9ba_: 3q9b A: [306285]
        automated match to d4zuoa_
        complexed with b3n, dms, k, na, zn
      2. 2557984Domain d3q9bb_: 3q9b B: [306286]
        automated match to d4zuoa_
        complexed with b3n, dms, k, na, zn
      3. 2557985Domain d3q9bc_: 3q9b C: [306287]
        automated match to d4zuoa_
        complexed with b3n, dms, k, na, zn
      4. 2557986Domain d3q9bd_: 3q9b D: [306288]
        automated match to d4zuoa_
        complexed with b3n, dms, k, na, zn
      5. 2557987Domain d3q9be_: 3q9b E: [306289]
        automated match to d4zuoa_
        complexed with b3n, dms, k, na, zn
      6. 2557988Domain d3q9bf_: 3q9b F: [306290]
        automated match to d4zuoa_
        complexed with b3n, dms, k, na, zn
      7. 2557989Domain d3q9bg_: 3q9b G: [306291]
        automated match to d4zuoa_
        complexed with b3n, dms, k, na, zn
      8. 2557990Domain d3q9bh_: 3q9b H: [306292]
        automated match to d4zuoa_
        complexed with b3n, dms, k, na, zn
      9. 2557991Domain d3q9bi_: 3q9b I: [306293]
        automated match to d4zuoa_
        complexed with b3n, dms, k, na, zn
      10. 2557992Domain d3q9bj_: 3q9b J: [306294]
        automated match to d4zuoa_
        complexed with b3n, dms, k, na, zn
      11. 2557993Domain d3q9bk_: 3q9b K: [306295]
        automated match to d4zuoa_
        complexed with b3n, dms, k, na, zn
      12. 2557994Domain d3q9bl_: 3q9b L: [306296]
        automated match to d4zuoa_
        complexed with b3n, dms, k, na, zn
    15. Domains for 3q9c:
      1. 2558001Domain d3q9ca_: 3q9c A: [306297]
        automated match to d4zuoa_
        complexed with k, na, q9c, zn
      2. 2558002Domain d3q9cb_: 3q9c B: [306298]
        automated match to d4zuoa_
        complexed with k, na, q9c, zn
      3. 2558003Domain d3q9cc_: 3q9c C: [306299]
        automated match to d4zuoa_
        complexed with k, na, q9c, zn
      4. 2558004Domain d3q9cd_: 3q9c D: [306300]
        automated match to d4zuoa_
        complexed with k, na, q9c, zn
      5. 2558005Domain d3q9ce_: 3q9c E: [306301]
        automated match to d4zuoa_
        complexed with k, na, q9c, zn
      6. 2558006Domain d3q9cf_: 3q9c F: [306302]
        automated match to d4zuoa_
        complexed with k, na, q9c, zn
      7. 2558007Domain d3q9cg_: 3q9c G: [306303]
        automated match to d4zuoa_
        complexed with k, na, q9c, zn
      8. 2558008Domain d3q9ch_: 3q9c H: [306304]
        automated match to d4zuoa_
        complexed with k, na, q9c, zn
      9. 2558009Domain d3q9ci_: 3q9c I: [306305]
        automated match to d4zuoa_
        complexed with k, na, q9c, zn
      10. 2558010Domain d3q9cj_: 3q9c J: [306306]
        automated match to d4zuoa_
        complexed with k, na, q9c, zn
      11. 2558011Domain d3q9ck_: 3q9c K: [306307]
        automated match to d4zuoa_
        complexed with k, na, q9c, zn
      12. 2558012Domain d3q9cl_: 3q9c L: [306308]
        automated match to d4zuoa_
        complexed with k, na, q9c, zn
    16. Domains for 3q9e:
      1. 2558031Domain d3q9ea_: 3q9e A: [306309]
        automated match to d4zuoa_
        complexed with k, na, sp5, zn
      2. 2558032Domain d3q9eb_: 3q9e B: [306310]
        automated match to d4zuoa_
        complexed with k, na, sp5, zn
      3. 2558033Domain d3q9ec_: 3q9e C: [306311]
        automated match to d4zuoa_
        complexed with k, na, sp5, zn
      4. 2558034Domain d3q9ed_: 3q9e D: [306312]
        automated match to d4zuoa_
        complexed with k, na, sp5, zn
      5. 2558035Domain d3q9ee_: 3q9e E: [306313]
        automated match to d4zuoa_
        complexed with k, na, sp5, zn
      6. 2558036Domain d3q9ef_: 3q9e F: [306314]
        automated match to d4zuoa_
        complexed with k, na, sp5, zn
      7. 2558037Domain d3q9eg_: 3q9e G: [306315]
        automated match to d4zuoa_
        complexed with k, na, sp5, zn
      8. 2558038Domain d3q9eh_: 3q9e H: [306316]
        automated match to d4zuoa_
        complexed with k, na, sp5, zn
      9. 2558039Domain d3q9ei_: 3q9e I: [306317]
        automated match to d4zuoa_
        complexed with k, na, sp5, zn
      10. 2558040Domain d3q9ej_: 3q9e J: [306318]
        automated match to d4zuoa_
        complexed with k, na, sp5, zn
      11. 2558041Domain d3q9ek_: 3q9e K: [306319]
        automated match to d4zuoa_
        complexed with k, na, sp5, zn
      12. 2558042Domain d3q9el_: 3q9e L: [306320]
        automated match to d4zuoa_
        complexed with k, na, sp5, zn
    17. Domains for 3q9f:
      1. 2558018Domain d3q9fa_: 3q9f A: [306321]
        automated match to d4zuoa_
        complexed with cxs, k, na, po4, zn
      2. 2558019Domain d3q9fb_: 3q9f B: [306322]
        automated match to d4zuoa_
        complexed with cxs, k, na, po4, zn
      3. 2558020Domain d3q9fc_: 3q9f C: [306323]
        automated match to d4zuoa_
        complexed with cxs, k, na, po4, zn
      4. 2558021Domain d3q9fd_: 3q9f D: [306324]
        automated match to d4zuoa_
        complexed with cxs, k, na, po4, zn
      5. 2558022Domain d3q9fe_: 3q9f E: [306325]
        automated match to d4zuoa_
        complexed with cxs, k, na, po4, zn
      6. 2558023Domain d3q9ff_: 3q9f F: [306326]
        automated match to d4zuoa_
        complexed with cxs, k, na, po4, zn
      7. 2558024Domain d3q9fg_: 3q9f G: [306327]
        automated match to d4zuoa_
        complexed with cxs, k, na, po4, zn
      8. 2558025Domain d3q9fh_: 3q9f H: [306328]
        automated match to d4zuoa_
        complexed with cxs, k, na, po4, zn
      9. 2558026Domain d3q9fi_: 3q9f I: [306329]
        automated match to d4zuoa_
        complexed with cxs, k, na, po4, zn
      10. 2558027Domain d3q9fj_: 3q9f J: [306330]
        automated match to d4zuoa_
        complexed with cxs, k, na, po4, zn
      11. 2558028Domain d3q9fk_: 3q9f K: [306331]
        automated match to d4zuoa_
        complexed with cxs, k, na, po4, zn
      12. 2558029Domain d3q9fl_: 3q9f L: [306332]
        automated match to d4zuoa_
        complexed with cxs, k, na, po4, zn
    18. Domain for 3qji:
    19. Domain for 3rl9:
    20. Domain for 3s9q:
    21. Domain for 3sj6:
    22. Domain for 3u6t:
    23. Domain for 3u6z:
    24. Domain for 3u70:
    25. Domain for 3u8f:
    26. Domain for 3v14:
    27. Domain for 3v2k:
    28. Domain for 4dwm:
    29. Domain for 4emf:
    30. Domain for 4emr:
    31. Domain for 4f9n:
    32. Domain for 4fxa:
    33. Domain for 4fz9:
    34. Domain for 4guw:
    35. Domain for 4h0z:
    36. Domain for 4hoa:
    37. Domain for 4i47:
    38. Domain for 4jtb:
    39. Domain for 4jtp:
    40. Domain for 4k2z:
    41. Domain for 4kl4:
    42. Domain for 4kmk:
    43. Domain for 4kpv:
    44. Domain for 4kwn:
    45. Domain for 4l66:
    46. Domain for 4lro:
    47. Domain for 4lt4:
    48. Domain for 4lwx:
    49. Domain for 4m5a:
    50. Domain for 4o0o:
    51. Domain for 4o4q:
    52. Domain for 4o8e:
    53. Domain for 4q9f:
    54. Domain for 4rzj:
    55. Domain for 4xy7:
    56. Domain for 4zt8:
    57. Domain for 4zu0:
    58. Domains for 4zum:
      1. 2557959Domain d4zuma_: 4zum A: [310119]
        automated match to d4zuoa_
        complexed with fks, gol, k, na, no3, zn
      2. 2557960Domain d4zumb_: 4zum B: [310120]
        automated match to d4zuoa_
        complexed with fks, gol, k, na, no3, zn
    59. Domains for 4zun:
      1. 2557954Domain d4zuna_: 4zun A: [310121]
        automated match to d4zuoa_
        complexed with gol, k, na, ss9, zn
      2. 2557955Domain d4zunb_: 4zun B: [310122]
        automated match to d4zuoa_
        complexed with gol, k, na, ss9, zn
    60. Domains for 4zuo:
      1. 2557942Domain d4zuoa_: 4zuo A: [310123]
        complexed with gol, k, nh4, xs6, zn
      2. 2557943Domain d4zuob_: 4zuo B: [310124]
        automated match to d4zuoa_
        complexed with gol, k, nh4, xs6, zn
    61. Domains for 4zup:
      1. 2557961Domain d4zupa_: 4zup A: [310125]
        automated match to d4zuoa_
        complexed with 5xa, gol, k, no3, zn
      2. 2557962Domain d4zupb_: 4zup B: [310126]
        automated match to d4zuoa_
        complexed with 5xa, gol, k, no3, zn
    62. Domains for 4zuq:
      1. 2557934Domain d4zuqa_: 4zuq A: [310127]
        automated match to d4zuoa_
        complexed with 6xa, gol, k, na, zn
      2. 2557935Domain d4zuqb_: 4zuq B: [310128]
        automated match to d4zuoa_
        complexed with 6xa, gol, k, na, zn
    63. Domains for 4zur:
      1. 2557932Domain d4zura_: 4zur A: [310129]
        automated match to d4zuoa_
        complexed with 7xa, gol, k, nh4, zn
      2. 2557933Domain d4zurb_: 4zur B: [310130]
        automated match to d4zuoa_
        complexed with 7xa, gol, k, nh4, zn
    64. Domain for 4zz6:
    65. Domain for 5cix:
    66. Domain for 5cso:
    67. Domain for 5cst:
    68. Domain for 5gm7:
    69. Domain for 5gz7:
    70. Domain for 5ilw:
    71. Domain for 5ilx:
    72. Domain for 5wv1:
    73. Domain for 5y48:
  6. 2558055Mongolian snake-gourd (Trichosanthes kirilowii) [TaxId:3677] [187299] (2 PDB entries)
    1. Domains for 2jdl:
      1. 2558056Domain d2jdla_: 2jdl A: [147987]
        automated match to d1gisa_
      2. 2558057Domain d2jdlb_: 2jdl B: [147988]
        automated match to d1gisa_
    2. Domains for 2vs6:
      1. 2558058Domain d2vs6a_: 2vs6 A: [168784]
        automated match to d1gisa_
      2. 2558059Domain d2vs6b_: 2vs6 B: [168785]
        automated match to d1gisa_
  7. 2558060Phytolacca acinosa [188469] (1 PDB entry)
  8. 2558062Phytolacca dioica [TaxId:29725] [188356] (6 PDB entries)
    1. Domain for 2qes:
    2. Domain for 2qet:
    3. Domain for 2z4u:
    4. Domain for 2z53:
    5. Domains for 3h5k:
      1. 2558067Domain d3h5ka_: 3h5k A: [177199]
        automated match to d1gika_
        complexed with edo, nag
      2. 2558068Domain d3h5kb_: 3h5k B: [177200]
        automated match to d1gika_
        complexed with edo, nag
    6. Domains for 3le7:
      1. 2558069Domain d3le7a_: 3le7 A: [180217]
        automated match to d1gika_
        complexed with ade, nag
      2. 2558070Domain d3le7b_: 3le7 B: [180218]
        automated match to d1gika_
        complexed with ade, nag

More info for Protein automated matches from d.165.1.1: Plant cytotoxins

Timeline for Protein automated matches from d.165.1.1: Plant cytotoxins: