Species:

1. Acinetobacter baumannii [TaxId:470] [276138] (1 PDB entry)

   • Domains for 5cy4:

     1. Domain d5cy4a_: 5cy4 A: [276225] automated match to d2gbza_ complexed with ca, edo

     2. Domain d5cy4b_: 5cy4 B: [276143] automated match to d2gbza_ complexed with ca, edo

     3. Domain d5cy4c_: 5cy4 C: [276142] automated match to d2gbza_ complexed with ca, edo

     4. Domain d5cy4d_: 5cy4 D: [276141] automated match to d2gbza_ complexed with ca, edo

     5. Domain d5cy4e_: 5cy4 E: [276147] automated match to d2gbza_ complexed with ca, edo

     6. Domain d5cy4f_: 5cy4 F: [276144] automated match to d2gbza_ complexed with ca, edo

2. Archaeoglobus fulgidus [TaxId:2234] [256016] (1 PDB entry)

   • Domains for 3p83:

     1. Domain d3p83d_: 3p83 D: [248436] Other proteins in same PDB: d3p83a1, d3p83a2, d3p83b1, d3p83b2, d3p83c1, d3p83c2 automated match to d2dffa_ protein/DNA complex; protein/RNA complex

     2. Domain d3p83e_: 3p83 E: [248437] Other proteins in same PDB: d3p83a1, d3p83a2, d3p83b1, d3p83b2, d3p83c1, d3p83c2 automated match to d2dffa_ protein/DNA complex; protein/RNA complex

     3. Domain d3p83f_: 3p83 F: [248438] Other proteins in same PDB: d3p83a1, d3p83a2, d3p83b1, d3p83b2, d3p83c1, d3p83c2 automated match to d2dffa_ protein/DNA complex; protein/RNA complex

3. Bovine immunodeficiency virus [TaxId:417296] [225970] (2 PDB entries)

   1. Domain for 3kkr:

      • Domain d3kkra_: 3kkr A: [212401] automated match to d4jlha_ complexed with no3

   2. Domains for 3kks:

      1. Domain d3kksa_: 3kks A: [212402] automated match to d4jlha_ complexed with act, gol

      2. Domain d3kksb_: 3kks B: [212403] automated match to d4jlha_ complexed with act, gol

4. Chlorobaculum tepidum [TaxId:1097] [225664] (1 PDB entry)

   • Domains for 3h08:

     1. Domain d3h08a_: 3h08 A: [210752] automated match to d2zqbb_ complexed with mg

     2. Domain d3h08b_: 3h08 B: [210753] automated match to d2zqbb_ complexed with mg

5. Feline immunodeficiency virus [TaxId:11674] [259692] (1 PDB entry)

   • Domain for 4pa1:

     • Domain d4pa1a_: 4pa1 A: [259693] automated match to d3kksb_

6. Fission yeast (Schizosaccharomyces pombe) [TaxId:4896] [255540] (3 PDB entries)

   1. Domain for 2p51:

      • Domain d2p51a_: 2p51 A: [243410] automated match to d2d5ra1 complexed with mg

   2. Domain for 3g0z:

      • Domain d3g0za_: 3g0z A: [246226] automated match to d2d5ra1 complexed with mn, zn

   3. Domain for 3g10:

      • Domain d3g10a_: 3g10 A: [246227] automated match to d2d5ra1 complexed with mg, mn

7. Geobacillus kaustophilus [TaxId:1462] [233272] (8 PDB entries)

   1. Domains for 3pv8:

      1. Domain d3pv8a1: 3pv8 A:298-468 [233274] Other proteins in same PDB: d3pv8a2, d3pv8d2 automated match to d1nk4a1 protein/DNA complex; complexed with d3t, mg, so4

      2. Domain d3pv8d1: 3pv8 D:298-468 [233273] Other proteins in same PDB: d3pv8a2, d3pv8d2 automated match to d1nk4a1 protein/DNA complex; complexed with d3t, mg, so4

   2. Domains for 3px0:

      1. Domain d3px0a1: 3px0 A:298-468 [248705] Other proteins in same PDB: d3px0a2, d3px0d2 automated match to d3pv8d1 protein/DNA complex; complexed with dcp, mn, so4

      2. Domain d3px0d1: 3px0 D:298-468 [248707] Other proteins in same PDB: d3px0a2, d3px0d2 automated match to d3pv8d1 protein/DNA complex; complexed with dcp, mn, so4

   3. Domains for 3px4:

      1. Domain d3px4a1: 3px4 A:298-468 [248709] Other proteins in same PDB: d3px4a2, d3px4d2 automated match to d3pv8d1 protein/DNA complex; complexed with dct, mg, so4

      2. Domain d3px4d1: 3px4 D:298-468 [248711] Other proteins in same PDB: d3px4a2, d3px4d2 automated match to d3pv8d1 protein/DNA complex; complexed with dct, mg, so4

   4. Domains for 3px6:

      1. Domain d3px6a1: 3px6 A:298-468 [248713] Other proteins in same PDB: d3px6a2, d3px6d2 automated match to d3pv8d1 protein/DNA complex; complexed with dct, mn, so4

      2. Domain d3px6d1: 3px6 D:296-468 [248715] Other proteins in same PDB: d3px6a2, d3px6d2 automated match to d3pv8d1 protein/DNA complex; complexed with dct, mn, so4

   5. Domains for 4dse:

      1. Domain d4dsea1: 4dse A:297-468 [251537] Other proteins in same PDB: d4dsea2, d4dsed2 automated match to d3pv8d1 protein/DNA complex; complexed with ctp, so4

      2. Domain d4dsed1: 4dse D:298-468 [251539] Other proteins in same PDB: d4dsea2, d4dsed2 automated match to d3pv8d1 protein/DNA complex; complexed with ctp, so4

   6. Domains for 4dsf:

      1. Domain d4dsfa1: 4dsf A:297-468 [251541] Other proteins in same PDB: d4dsfa2, d4dsfd2 automated match to d3pv8d1 protein/DNA complex; complexed with ctp, so4

      2. Domain d4dsfd1: 4dsf D:298-468 [251543] Other proteins in same PDB: d4dsfa2, d4dsfd2 automated match to d3pv8d1 protein/DNA complex; complexed with ctp, so4

   7. Domains for 4ez6:

      1. Domain d4ez6a1: 4ez6 A:297-468 [251825] Other proteins in same PDB: d4ez6a2, d4ez6d2 automated match to d3pv8d1 protein/DNA complex; complexed with dg3, mpd, so4

      2. Domain d4ez6d1: 4ez6 D:297-468 [251827] Other proteins in same PDB: d4ez6a2, d4ez6d2 automated match to d3pv8d1 protein/DNA complex; complexed with dg3, mpd, so4

   8. Domains for 4ez9:

      1. Domain d4ez9a1: 4ez9 A:298-468 [251829] Other proteins in same PDB: d4ez9a2, d4ez9d2 automated match to d3pv8d1 protein/DNA complex; complexed with d3t, mpd, so4

      2. Domain d4ez9d1: 4ez9 D:298-468 [251831] Other proteins in same PDB: d4ez9a2, d4ez9d2 automated match to d3pv8d1 protein/DNA complex; complexed with d3t, mpd, so4

8. Geobacillus kaustophilus [TaxId:235909] [226399] (6 PDB entries)

   1. Domains for 4dqp:

      1. Domain d4dqpa1: 4dqp A:297-468 [219946] Other proteins in same PDB: d4dqpa2, d4dqpd2 automated match to d1nk4a1 protein/DNA complex; complexed with dct, mg, so4

      2. Domain d4dqpd1: 4dqp D:298-468 [219948] Other proteins in same PDB: d4dqpa2, d4dqpd2 automated match to d1nk4a1 protein/DNA complex; complexed with dct, mg, so4

   2. Domains for 4dqq:

      1. Domain d4dqqa1: 4dqq A:297-468 [219950] Other proteins in same PDB: d4dqqa2, d4dqqd2 automated match to d1nk4a1 protein/DNA complex; complexed with ctp, mes, mg, mpd, so4

      2. Domain d4dqqd1: 4dqq D:293-468 [219952] Other proteins in same PDB: d4dqqa2, d4dqqd2 automated match to d1nk4a1 protein/DNA complex; complexed with ctp, mes, mg, mpd, so4

   3. Domains for 4dqr:

      1. Domain d4dqra1: 4dqr A:297-468 [219954] Other proteins in same PDB: d4dqra2, d4dqrd2 automated match to d1nk4a1 protein/DNA complex; complexed with ctp, mn, mpd, so4

      2. Domain d4dqrd1: 4dqr D:298-468 [219956] Other proteins in same PDB: d4dqra2, d4dqrd2 automated match to d1nk4a1 protein/DNA complex; complexed with ctp, mn, mpd, so4

   4. Domain for 4dqs:

      • Domain d4dqsa1: 4dqs A:298-468 [251533] Other proteins in same PDB: d4dqsa2 automated match to d3tana1 protein/DNA complex; complexed with ctp, so4

   5. Domains for 4ds4:

      1. Domain d4ds4a1: 4ds4 A:297-468 [219990] Other proteins in same PDB: d4ds4a2, d4ds4d2 automated match to d1nk4a1 protein/DNA complex; complexed with so4

      2. Domain d4ds4d1: 4ds4 D:296-468 [219992] Other proteins in same PDB: d4ds4a2, d4ds4d2 automated match to d1nk4a1 protein/DNA complex; complexed with so4

   6. Domains for 4ds5:

      1. Domain d4ds5a1: 4ds5 A:297-468 [219994] Other proteins in same PDB: d4ds5a2, d4ds5d2 automated match to d1nk4a1 protein/DNA complex; complexed with so4

      2. Domain d4ds5d1: 4ds5 D:296-468 [219996] Other proteins in same PDB: d4ds5a2, d4ds5d2 automated match to d1nk4a1 protein/DNA complex; complexed with so4

9. Geobacillus sp. [TaxId:129337] [233669] (4 PDB entries)

   1. Domain for 3tan:

      • Domain d3tana1: 3tan A:297-468 [233670] Other proteins in same PDB: d3tana2 automated match to d1nk4a1 protein/DNA complex; complexed with dcp, so4, suc

   2. Domain for 3tap:

      • Domain d3tapa1: 3tap A:297-468 [233673] Other proteins in same PDB: d3tapa2 automated match to d1nk4a1 protein/DNA complex; complexed with mg, so4, suc

   3. Domain for 3taq:

      • Domain d3taqa1: 3taq A:297-468 [233675] Other proteins in same PDB: d3taqa2 automated match to d1nk4a1 protein/DNA complex; complexed with mg, so4, suc

   4. Domain for 3tar:

      • Domain d3tara1: 3tar A:297-468 [233677] Other proteins in same PDB: d3tara2 automated match to d1nk4a1 protein/DNA complex; complexed with mg, so4, suc

10. Geobacillus stearothermophilus [TaxId:1422] [255224] (2 PDB entries)

    1. Domain for 2hw3:

       • Domain d2hw3a1: 2hw3 A:297-468 [136819] Other proteins in same PDB: d2hw3a2 automated match to d4dqqd1 protein/DNA complex; complexed with mg, so4, suc

    2. Domain for 4o0i:

       • Domain d4o0ia1: 4o0i A:297-468 [261824] Other proteins in same PDB: d4o0ia2 automated match to d4dqqd1 protein/DNA complex; complexed with gol, na, so4

11. Hiv-1 m:b_hxb2r [TaxId:11706] [225268] (21 PDB entries)

    1. Domain for 2opp:

       • Domain d2oppa3: 2opp A:430-539 [198207] Other proteins in same PDB: d2oppa2, d2oppb_ complexed with hbq, mg, po4

    2. Domain for 2opq:

       • Domain d2opqa2: 2opq A:430-537 [198209] Other proteins in same PDB: d2opqa1, d2opqb_ automated match to d1vrta1 complexed with hbq, po4; mutant

    3. Domain for 2opr:

       • Domain d2opra2: 2opr A:430-548 [198211] Other proteins in same PDB: d2opra1, d2oprb_ automated match to d1rtda1 complexed with hbq; mutant

    4. Domain for 2ops:

       • Domain d2opsa3: 2ops A:430-543 [198213] Other proteins in same PDB: d2opsa2, d2opsb_ complexed with hbq, po4; mutant

    5. Domain for 2rf2:

       • Domain d2rf2a3: 2rf2 A:430-557 [198340] Other proteins in same PDB: d2rf2a2, d2rf2b_ automated match to d1bqna1 protein/DNA complex; protein/RNA complex; complexed with mrx

    6. Domain for 2ynf:

       • Domain d2ynfa2: 2ynf A:430-558 [207670] Other proteins in same PDB: d2ynfa1, d2ynfb_ automated match to d1bqna1 complexed with mg, tar, whu; mutant

    7. Domain for 2yng:

       • Domain d2ynga2: 2yng A:430-558 [207673] Other proteins in same PDB: d2ynga1, d2yngb_ automated match to d1bqna1 complexed with mg, srt, whu

    8. Domain for 2ynh:

       • Domain d2ynha2: 2ynh A:430-558 [207676] Other proteins in same PDB: d2ynha1, d2ynhb_ automated match to d1bqna1 complexed with eur, tar

    9. Domain for 2yni:

       • Domain d2ynia2: 2yni A:430-558 [207679] Other proteins in same PDB: d2ynia1, d2ynib_ automated match to d1bqna1 complexed with cxd, mg, tar

    10. Domain for 3c6t:

        • Domain d3c6ta3: 3c6t A:430-557 [199171] Other proteins in same PDB: d3c6ta2, d3c6tb_ automated match to d1bqna1 protein/DNA complex; protein/RNA complex; complexed with m14

    11. Domain for 3c6u:

        • Domain d3c6ua3: 3c6u A:430-557 [199173] Other proteins in same PDB: d3c6ua2, d3c6ub_ automated match to d1bqna1 protein/DNA complex; protein/RNA complex; complexed with m22

    12. Domain for 3ffi:

        • Domain d3ffia2: 3ffi A:430-553 [199403] Other proteins in same PDB: d3ffia1, d3ffib_ automated match to d1bqna1 complexed with 3ob

    13. Domain for 3i0r:

        • Domain d3i0ra2: 3i0r A:430-544 [199537] Other proteins in same PDB: d3i0ra1, d3i0rb_ automated match to d1bqna1 protein/DNA complex; protein/RNA complex; complexed with rt3

    14. Domain for 3i0s:

        • Domain d3i0sa2: 3i0s A:430-557 [199539] Other proteins in same PDB: d3i0sa1, d3i0sb_ automated match to d1bqna1 protein/DNA complex; protein/RNA complex; complexed with rt7

    15. Domain for 3med:

        • Domain d3meda2: 3med A:430-552 [199832] Other proteins in same PDB: d3meda1, d3medb_ automated match to d1bqna1 complexed with 65b, cl, so4

    16. Domain for 3meg:

        • Domain d3mega2: 3meg A:430-552 [199836] Other proteins in same PDB: d3mega1, d3megb_ automated match to d1bqna1 complexed with so4, t27

    17. Domain for 3t19:

        • Domain d3t19a2: 3t19 A:430-557 [216636] Other proteins in same PDB: d3t19a1, d3t19b_ automated match to d1bqna1 complexed with 5ma

    18. Domain for 3t1a:

        • Domain d3t1aa2: 3t1a A:430-557 [216638] Other proteins in same PDB: d3t1aa1, d3t1ab_ automated match to d1bqna1 complexed with 5ma; mutant

    19. Domain for 3tam:

        • Domain d3tama2: 3tam A:430-557 [200791] Other proteins in same PDB: d3tama1, d3tamb_ automated match to d1bqna1 complexed with m06; mutant

    20. Domain for 4kv8:

        • Domain d4kv8a2: 4kv8 A:430-554 [224482] Other proteins in same PDB: d4kv8a1, d4kv8b_ automated match to d1bqna1 complexed with 1wt, mla, suc

    21. Domain for 4ncg:

        • Domain d4ncga2: 4ncg A:430-556 [236816] Other proteins in same PDB: d4ncga1, d4ncgb_ automated match to d2rf2a3 complexed with 2kw; mutant

12. Human (Homo sapiens) [TaxId:9606] [225370] (2 PDB entries)

    1. Domain for 2qk9:

       • Domain d2qk9a_: 2qk9 A: [205832] automated match to d2zqba_ protein/DNA complex; protein/RNA complex; complexed with 16d, flc, gol, na, so4; mutant

    2. Domains for 2qkb:

       1. Domain d2qkba_: 2qkb A: [205833] automated match to d2zqba_ protein/DNA complex; protein/RNA complex; complexed with edo, so4; mutant

       2. Domain d2qkbb_: 2qkb B: [205834] automated match to d2zqba_ protein/DNA complex; protein/RNA complex; complexed with edo, so4; mutant

13. Human immunodeficiency virus 1 [TaxId:11676] [225129] (15 PDB entries)

    1. Domain for 2hnd:

       • Domain d2hnda2: 2hnd A:430-537 [204627] Other proteins in same PDB: d2hnda1, d2hndb_ automated match to d1vrta1 complexed with mg, nvp, po4; mutant

    2. Domain for 2hny:

       • Domain d2hnya2: 2hny A:430-537 [204630] Other proteins in same PDB: d2hnya1, d2hnyb_ automated match to d1vrta1 complexed with mg, nvp, po4; mutant

    3. Domain for 2hnz:

       • Domain d2hnza2: 2hnz A:430-537 [242051] Other proteins in same PDB: d2hnza1, d2hnzb_ automated match to d3dlga2 complexed with pc0, po4; mutant

    4. Domain for 2i5j:

       • Domain d2i5ja2: 2i5j A:430-552 [238682] Other proteins in same PDB: d2i5ja1, d2i5jb_ automated match to d2ykna2 protein/RNA complex; complexed with glc, k05, mg, suc

    5. Domain for 2jle:

       • Domain d2jlea2: 2jle A:430-545 [205112] Other proteins in same PDB: d2jlea1, d2jleb_ automated match to d1bqna1 complexed with i15

    6. Domain for 2vg5:

       • Domain d2vg5a2: 2vg5 A:430-557 [198438] Other proteins in same PDB: d2vg5a1, d2vg5b_ automated match to d1bqna1 protein/DNA complex; protein/RNA complex; complexed with nnc

    7. Domain for 2vg6:

       • Domain d2vg6a2: 2vg6 A:430-551 [238890] Other proteins in same PDB: d2vg6a1, d2vg6b_ automated match to d2ykna2 protein/DNA complex; protein/RNA complex; complexed with nnb

    8. Domain for 2vg7:

       • Domain d2vg7a2: 2vg7 A:430-551 [198440] Other proteins in same PDB: d2vg7a1, d2vg7b_ automated match to d1bqna1 protein/DNA complex; protein/RNA complex; complexed with nni

    9. Domain for 2zd1:

       • Domain d2zd1a2: 2zd1 A:430-552 [198799] Other proteins in same PDB: d2zd1a1, d2zd1b_ automated match to d1bqna1 protein/DNA complex; protein/RNA complex; complexed with edo, so4, t27

    10. Domain for 2ze2:

        • Domain d2ze2a2: 2ze2 A:430-552 [198801] Other proteins in same PDB: d2ze2a1, d2ze2b_ automated match to d1bqna1 protein/DNA complex; protein/RNA complex; complexed with t27; mutant

    11. Domain for 3bgr:

        • Domain d3bgra2: 3bgr A:430-552 [199092] Other proteins in same PDB: d3bgra1, d3bgrb_ automated match to d1bqna1 protein/DNA complex; protein/RNA complex; complexed with edo, t27; mutant

    12. Domain for 4kko:

        • Domain d4kkoa2: 4kko A:430-552 [227598] Other proteins in same PDB: d4kkoa1, d4kkob_ automated match to d2zd1a2 complexed with 1re

    13. Domain for 4lsl:

        • Domain d4lsla2: 4lsl A:430-548 [230149] Other proteins in same PDB: d4lsla1, d4lslb_ automated match to d2zd1a2 complexed with 1yq

    14. Domain for 4mfb:

        • Domain d4mfba2: 4mfb A:430-547 [228815] Other proteins in same PDB: d4mfba1, d4mfbb_ automated match to d2zd1a2 complexed with 29t

    15. Domain for 4zhr:

        • Domain d4zhra2: 4zhr A:430-553 [279398] Other proteins in same PDB: d4zhra1, d4zhrb_ automated match to d1bqna1 mutant

14. Human immunodeficiency virus type 1 bh10 [TaxId:11678] [225195] (19 PDB entries)

    1. Domain for 2iaj:

       • Domain d2iaja2: 2iaj A:430-551 [198039] Other proteins in same PDB: d2iaja1, d2iajb_ automated match to d1bqna1 protein/DNA complex; complexed with atp, gol, mn, na; mutant

    2. Domain for 2ic3:

       • Domain d2ic3a2: 2ic3 A:430-558 [242109] Other proteins in same PDB: d2ic3a1, d2ic3b_ automated match to d1bqna1 complexed with hby, mn; mutant

    3. Domain for 2ykm:

       • Domain d2ykma2: 2ykm A:430-558 [207658] Other proteins in same PDB: d2ykma1, d2ykmb_ automated match to d1bqna1 complexed with ca, ykn

    4. Domain for 2ykn:

       • Domain d2ykna2: 2ykn A:430-558 [207661] Other proteins in same PDB: d2ykna1, d2yknb_ automated match to d1bqna1 complexed with ca, ykn

    5. Domain for 3dlk:

       • Domain d3dlka2: 3dlk A:430-554 [199252] Other proteins in same PDB: d3dlka1, d3dlkb_ automated match to d1bqna1 complexed with so4

    6. Domain for 3ig1:

       • Domain d3ig1a2: 3ig1 A:430-554 [211672] Other proteins in same PDB: d3ig1a1, d3ig1b_ automated match to d1bqna1 protein/DNA complex; protein/RNA complex; complexed with jth, mn

    7. Domain for 3irx:

       • Domain d3irxa2: 3irx A:430-554 [211860] Other proteins in same PDB: d3irxa1, d3irxb_ automated match to d1bqna1 protein/DNA complex; protein/RNA complex; complexed with udr

    8. Domain for 3is9:

       • Domain d3is9a2: 3is9 A:430-554 [211900] Other proteins in same PDB: d3is9a1, d3is9b_ automated match to d1bqna1 protein/DNA complex; protein/RNA complex; complexed with ac7

    9. Domain for 3qo9:

       • Domain d3qo9a2: 3qo9 A:430-552 [215330] Other proteins in same PDB: d3qo9a1, d3qo9b_ automated match to d1bqna1 protein/DNA complex; protein/RNA complex; complexed with qo9

    10. Domain for 4h4o:

        • Domain d4h4oa2: 4h4o A:430-548 [222385] Other proteins in same PDB: d4h4oa1, d4h4ob_ automated match to d1bqna1 complexed with 506

    11. Domain for 4i2p:

        • Domain d4i2pa2: 4i2p A:430-552 [222866] Other proteins in same PDB: d4i2pa1, d4i2pb_ automated match to d1bqna1 protein/DNA complex; protein/RNA complex; complexed with g73

    12. Domain for 4i2q:

        • Domain d4i2qa2: 4i2q A:430-554 [222869] Other proteins in same PDB: d4i2qa1, d4i2qb_ automated match to d1bqna1 protein/DNA complex; protein/RNA complex; complexed with 1bt, edo; mutant

    13. Domain for 4o44:

        • Domain d4o44a2: 4o44 A:430-552 [257221] Other proteins in same PDB: d4o44a1, d4o44b_ automated match to d2ykna2 complexed with 2rs

    14. Domain for 4o4g:

        • Domain d4o4ga2: 4o4g A:430-552 [260719] Other proteins in same PDB: d4o4ga1, d4o4gb_ automated match to d2ykna2 complexed with 2rt

    15. Domain for 4rw4:

        • Domain d4rw4a2: 4rw4 A:430-552 [271955] Other proteins in same PDB: d4rw4a1, d4rw4b_ automated match to d2ykna2 complexed with 494

    16. Domain for 4rw6:

        • Domain d4rw6a2: 4rw6 A:430-552 [271958] Other proteins in same PDB: d4rw6a1, d4rw6b_ automated match to d2ykna2 complexed with 494

    17. Domain for 4rw7:

        • Domain d4rw7a2: 4rw7 A:430-552 [271961] Other proteins in same PDB: d4rw7a1, d4rw7b_ automated match to d2ykna2 complexed with 3x6

    18. Domain for 4rw8:

        • Domain d4rw8a2: 4rw8 A:430-547 [271962] Other proteins in same PDB: d4rw8a1, d4rw8b_ automated match to d2ykna2 complexed with 3x6

    19. Domain for 4rw9:

        • Domain d4rw9a2: 4rw9 A:430-552 [271953] Other proteins in same PDB: d4rw9a1, d4rw9b_ automated match to d2ykna2 complexed with 3x6

15. Human immunodeficiency virus type 1 group m subtype b (isolate bh10) [TaxId:11678] [275362] (2 PDB entries)

    1. Domain for 5c24:

       • Domain d5c24a2: 5c24 A:430-545 [275363] Other proteins in same PDB: d5c24a1, d5c24b_ automated match to d4puoa2 complexed with 4xo, mg, so4

    2. Domain for 5c25:

       • Domain d5c25a2: 5c25 A:430-552 [275365] Other proteins in same PDB: d5c25a1, d5c25b_ automated match to d1dloa1 protein/DNA complex; complexed with 639, mg, so4

16. Human immunodeficiency virus type 1 group m subtype b [TaxId:11678] [261468] (1 PDB entry)

    • Domain for 4we1:

      • Domain d4we1a2: 4we1 A:430-548 [261469] Other proteins in same PDB: d4we1a1, d4we1b_ automated match to d2ykna2 complexed with 3lq, mg, so4

17. Human immunodeficiency virus type 1 [TaxId:11678] [225971] (18 PDB entries)

    1. Domain for 3kli:

       • Domain d3klia2: 3kli A:430-551 [212412] Other proteins in same PDB: d3klia1, d3klib_ automated match to d1bqna1

    2. Domain for 3qlh:

       • Domain d3qlha2: 3qlh A:430-554 [215287] Other proteins in same PDB: d3qlha1, d3qlhb_ automated match to d1hqea1 complexed with dms, edo, mn, mnk, t27

    3. Domain for 4dg1:

       • Domain d4dg1a2: 4dg1 A:430-549 [219745] Other proteins in same PDB: d4dg1a1, d4dg1b_ automated match to d1hqea1 complexed with edo, gol, mg; mutant

    4. Domain for 4g1q:

       • Domain d4g1qa2: 4g1q A:430-554 [221663] Other proteins in same PDB: d4g1qa1, d4g1qb_ automated match to d1bqna1 protein/DNA complex; protein/RNA complex; complexed with edo, mg, so4, t27

    5. Domain for 4h4m:

       • Domain d4h4ma2: 4h4m A:430-548 [222382] Other proteins in same PDB: d4h4ma1, d4h4mb_ automated match to d1bqna1 complexed with 494, edo

    6. Domain for 4icl:

       • Domain d4icla2: 4icl A:430-554 [223123] Other proteins in same PDB: d4icla1, d4iclb_ automated match to d1bqna1 protein/DNA complex; protein/RNA complex; complexed with 14n, dms, mg, t27

    7. Domain for 4id5:

       • Domain d4id5a2: 4id5 A:430-554 [223126] Other proteins in same PDB: d4id5a1, d4id5b_ automated match to d1bqna1 protein/DNA complex; protein/RNA complex; complexed with 1ff, dms, mg, t27

    8. Domain for 4idk:

       • Domain d4idka2: 4idk A:430-554 [223129] Other proteins in same PDB: d4idka1, d4idkb_ automated match to d1bqna1 protein/DNA complex; protein/RNA complex; complexed with 1fe, dms, mg, t27

    9. Domain for 4ifv:

       • Domain d4ifva2: 4ifv A:430-554 [223150] Other proteins in same PDB: d4ifva1, d4ifvb_ automated match to d1bqna1 protein/DNA complex; protein/RNA complex; complexed with dms, fmq, mg, t27

    10. Domain for 4ify:

        • Domain d4ifya2: 4ify A:430-554 [223153] Other proteins in same PDB: d4ifya1, d4ifyb_ automated match to d1bqna1 protein/DNA complex; protein/RNA complex; complexed with 1fd, dms, mg, t27

    11. Domain for 4ig0:

        • Domain d4ig0a2: 4ig0 A:430-554 [223156] Other proteins in same PDB: d4ig0a1, d4ig0b_ automated match to d1bqna1 protein/DNA complex; protein/RNA complex; complexed with 1fg, dms

    12. Domain for 4ig3:

        • Domain d4ig3a2: 4ig3 A:430-554 [223159] Other proteins in same PDB: d4ig3a1, d4ig3b_ automated match to d1bqna1 protein/DNA complex; protein/RNA complex; complexed with dms, j94, t27

    13. Domain for 4kfb:

        • Domain d4kfba2: 4kfb A:430-554 [224284] Other proteins in same PDB: d4kfba1, d4kfbb_ automated match to d1bqna1 protein/DNA complex; protein/RNA complex; complexed with 1qp, dms, t27

    14. Domain for 4ko0:

        • Domain d4ko0a2: 4ko0 A:430-554 [227596] Other proteins in same PDB: d4ko0a1, d4ko0b_ automated match to d4g1qa2 protein/DNA complex; protein/RNA complex; complexed with edo, jlj, so4

    15. Domain for 4lsn:

        • Domain d4lsna2: 4lsn A:430-548 [266697] Other proteins in same PDB: d4lsna1, d4lsnb_ automated match to d2ykna2 complexed with 1yr

    16. Domains for 4pqu:

        1. Domain d4pqua2: 4pqu A:430-545 [257525] Other proteins in same PDB: d4pqua1, d4pqub_, d4pquc1, d4pqud_ automated match to d2ykna2 protein/DNA complex; protein/RNA complex; complexed with dtp, edo, gol, mg, so4

        2. Domain d4pquc2: 4pqu C:430-545 [258230] Other proteins in same PDB: d4pqua1, d4pqub_, d4pquc1, d4pqud_ automated match to d2ykna2 protein/DNA complex; protein/RNA complex; complexed with dtp, edo, gol, mg, so4

    17. Domains for 4puo:

        1. Domain d4puoa2: 4puo A:430-554 [263570] Other proteins in same PDB: d4puoa1, d4puob_, d4puoc1, d4puod_ automated match to d2ykna2 protein/DNA complex; protein/RNA complex; complexed with nvp

        2. Domain d4puoc2: 4puo C:430-554 [263572] Other proteins in same PDB: d4puoa1, d4puob_, d4puoc1, d4puod_ automated match to d2ykna2 protein/DNA complex; protein/RNA complex; complexed with nvp

    18. Domains for 4pwd:

        1. Domain d4pwda2: 4pwd A:430-554 [263580] Other proteins in same PDB: d4pwda1, d4pwdb_, d4pwdc1, d4pwdd_ automated match to d2ykna2 protein/DNA complex; protein/RNA complex; complexed with ca, nvp, so4

        2. Domain d4pwdc2: 4pwd C:430-554 [263582] Other proteins in same PDB: d4pwda1, d4pwdb_, d4pwdc1, d4pwdd_ automated match to d2ykna2 protein/DNA complex; protein/RNA complex; complexed with ca, nvp, so4

18. Human immunodeficiency virus type 1 [TaxId:11706] [225515] (19 PDB entries)

    1. Domain for 3di6:

       • Domain d3di6a3: 3di6 A:430-555 [199235] Other proteins in same PDB: d3di6a2, d3di6b_ complexed with pdz

    2. Domain for 3dm2:

       • Domain d3dm2a2: 3dm2 A:430-539 [239216] Other proteins in same PDB: d3dm2a1, d3dm2b_ automated match to d1bqna1 complexed with gwe, po4; mutant

    3. Domain for 3dmj:

       • Domain d3dmja2: 3dmj A:430-539 [199254] Other proteins in same PDB: d3dmja1, d3dmjb_ automated match to d1bqna1 complexed with gwe, po4; mutant

    4. Domain for 3dok:

       • Domain d3doka2: 3dok A:430-539 [199256] Other proteins in same PDB: d3doka1, d3dokb_ automated match to d1bqna1 complexed with gwj, po4; mutant

    5. Domain for 3drp:

       • Domain d3drpa3: 3drp A:430-557 [199266] Other proteins in same PDB: d3drpa2, d3drpb_ automated match to d1bqna1 complexed with r8e

    6. Domain for 3drr:

       • Domain d3drra3: 3drr A:430-557 [199268] Other proteins in same PDB: d3drra2, d3drrb_ complexed with r8e; mutant

    7. Domain for 3drs:

       • Domain d3drsa3: 3drs A:430-548 [199270] Other proteins in same PDB: d3drsa2, d3drsb_ complexed with r8d; mutant

    8. Domain for 3dya:

       • Domain d3dyaa2: 3dya A:430-555 [232042] Other proteins in same PDB: d3dyaa1, d3dyab_ automated match to d3di6a3 complexed with pzl

    9. Domain for 3e01:

       • Domain d3e01a2: 3e01 A:430-556 [232044] Other proteins in same PDB: d3e01a1, d3e01b_ automated match to d3di6a3 complexed with pz2

    10. Domain for 3kjv:

        • Domain d3kjva2: 3kjv A:430-556 [247215] Other proteins in same PDB: d3kjva1, d3kjvb_ automated match to d1bqna1 protein/DNA complex; complexed with mg, so4

    11. Domain for 3kk1:

        • Domain d3kk1a2: 3kk1 A:430-555 [199618] Other proteins in same PDB: d3kk1a1, d3kk1b_ automated match to d1bqna1 protein/DNA complex; complexed with 914, mg, so4

    12. Domain for 3kk2:

        • Domain d3kk2a2: 3kk2 A:430-555 [199620] Other proteins in same PDB: d3kk2a1, d3kk2b_ automated match to d1bqna1 protein/DNA complex; complexed with dtp, mg, so4

    13. Domain for 3kk3:

        • Domain d3kk3a2: 3kk3 A:430-555 [199622] Other proteins in same PDB: d3kk3a1, d3kk3b_ automated match to d1bqna1 protein/DNA complex; complexed with mg, so4

    14. Domain for 3lp0:

        • Domain d3lp0a2: 3lp0 A:430-557 [199755] Other proteins in same PDB: d3lp0a1, d3lp0b_ automated match to d1bqna1 protein/DNA complex; protein/RNA complex; complexed with lp7, mn, nvp

    15. Domain for 3lp1:

        • Domain d3lp1a2: 3lp1 A:430-557 [199757] Other proteins in same PDB: d3lp1a1, d3lp1b_ automated match to d1bqna1 protein/DNA complex; protein/RNA complex; complexed with lp8, mn, nvp

    16. Domain for 3lp2:

        • Domain d3lp2a2: 3lp2 A:430-557 [199759] Other proteins in same PDB: d3lp2a1, d3lp2b_ automated match to d1bqna1 protein/DNA complex; protein/RNA complex; complexed with lp9, mn

    17. Domain for 3m8p:

        • Domain d3m8pa2: 3m8p A:430-555 [232904] Other proteins in same PDB: d3m8pa1, d3m8pb_ automated match to d3di6a3 complexed with 65b

    18. Domain for 3m8q:

        • Domain d3m8qa2: 3m8q A:430-557 [232906] Other proteins in same PDB: d3m8qa1, d3m8qb_ automated match to d3di6a3 complexed with djz

    19. Domain for 3nbp:

        • Domain d3nbpa2: 3nbp A:430-557 [232996] Other proteins in same PDB: d3nbpa1, d3nbpb_ automated match to d3di6a3 complexed with jgz, mn

19. Methylocaldum szegediense [TaxId:73780] [269348] (1 PDB entry)

    • Domain for 4rg8:

      • Domain d4rg8a_: 4rg8 A: [269349] automated match to d3hp9a_ complexed with mg

20. Moloney murine leukemia virus [TaxId:11801] [225127] (1 PDB entry)

    • Domain for 2hb5:

      • Domain d2hb5a_: 2hb5 A: [204531] automated match to d4e89a_ complexed with mg, so4

21. Mouse (Mus musculus) [TaxId:10090] [187264] (6 PDB entries)

    1. Domain for 2ioc:

       • Domain d2iocb_: 2ioc B: [147743] Other proteins in same PDB: d2ioca1 automated match to d1y97a1 complexed with d5m, mn

    2. Domains for 2o4g:

       1. Domain d2o4gb_: 2o4g B: [148585] Other proteins in same PDB: d2o4ga1 automated match to d1y97a1 protein/DNA complex; complexed with mg, tmp

       2. Domain d2o4gc_: 2o4g C: [148586] Other proteins in same PDB: d2o4ga1 automated match to d1y97a1 protein/DNA complex; complexed with mg, tmp

       3. Domain d2o4gd_: 2o4g D: [148587] Other proteins in same PDB: d2o4ga1 automated match to d1y97a1 protein/DNA complex; complexed with mg, tmp

    3. Domains for 2oa8:

       1. Domain d2oa8a_: 2oa8 A: [148693] automated match to d1y97a1 protein/DNA complex; complexed with ca

       2. Domain d2oa8b_: 2oa8 B: [148694] automated match to d1y97a1 protein/DNA complex; complexed with ca

    4. Domains for 3b6o:

       1. Domain d3b6oa_: 3b6o A: [154901] automated match to d1y97a1 protein/DNA complex; complexed with li, tmp

       2. Domain d3b6ob_: 3b6o B: [154902] automated match to d1y97a1 protein/DNA complex; complexed with li, tmp

       3. Domain d3b6oc_: 3b6o C: [154903] automated match to d1y97a1 protein/DNA complex; complexed with li, tmp

       4. Domain d3b6od_: 3b6o D: [154904] automated match to d1y97a1 protein/DNA complex; complexed with li, tmp

    5. Domains for 3b6p:

       1. Domain d3b6pa_: 3b6p A: [154905] automated match to d1y97a1 protein/DNA complex; complexed with na, tmp, zn

       2. Domain d3b6pb_: 3b6p B: [154906] automated match to d1y97a1 protein/DNA complex; complexed with na, tmp, zn

       3. Domain d3b6pc_: 3b6p C: [154907] automated match to d1y97a1 protein/DNA complex; complexed with na, tmp, zn

       4. Domain d3b6pd_: 3b6p D: [154908] automated match to d1y97a1 protein/DNA complex; complexed with na, tmp, zn

    6. Domains for 3u6f:

       1. Domain d3u6fa_: 3u6f A: [250093] automated match to d2oa8b_ protein/DNA complex; complexed with bu1, mg; mutant

       2. Domain d3u6fb_: 3u6f B: [250094] automated match to d2oa8b_ protein/DNA complex; complexed with bu1, mg; mutant

22. Pyrococcus furiosus [TaxId:2261] [224898] (3 PDB entries)

    1. Domain for 2jgu:

       • Domain d2jgua1: 2jgu A:1-347 [205039] Other proteins in same PDB: d2jgua2 automated match to d2vwja1 complexed with mn

    2. Domain for 3a2f:

       • Domain d3a2fa1: 3a2f A:1-347 [208096] Other proteins in same PDB: d3a2fa2, d3a2fb1, d3a2fb2 automated match to d2vwja1 protein/DNA complex; mutant

    3. Domains for 4ahc:

       1. Domain d4ahca1: 4ahc A:1-347 [218866] Other proteins in same PDB: d4ahca2, d4ahcb2 automated match to d2vwja1 complexed with gol

       2. Domain d4ahcb1: 4ahc B:1-347 [218868] Other proteins in same PDB: d4ahca2, d4ahcb2 automated match to d2vwja1 complexed with gol

23. Sulfolobus tokodaii [TaxId:273063] [255750] (2 PDB entries)

    1. Domain for 2ehg:

       • Domain d2ehga_: 2ehg A: [264280] automated match to d3alya_

    2. Domains for 3aly:

       1. Domain d3alya_: 3aly A: [245170] automated match to d3u3ga_

       2. Domain d3alyb_: 3aly B: [245171] automated match to d3u3ga_

24. Thermococcus kodakarensis [TaxId:69014] [226698] (1 PDB entry)

    • Domain for 4k8z:

      • Domain d4k8za1: 4k8z A:1-347 [224214] Other proteins in same PDB: d4k8za2 automated match to d1qqca1 protein/DNA complex; complexed with edo, mg, nco

25. Thermus aquaticus [TaxId:271] [267867] (4 PDB entries)

    1. Domain for 3po4:

       • Domain d3po4a1: 3po4 A:295-422 [265198] Other proteins in same PDB: d3po4a2 automated match to d1bgxt3 protein/DNA complex; complexed with dds, gol, mg, na; mutant

    2. Domain for 3po5:

       • Domain d3po5a1: 3po5 A:295-422 [265200] Other proteins in same PDB: d3po5a2 automated match to d1bgxt3 protein/DNA complex; complexed with dds, gol, mg, pge; mutant

    3. Domain for 4bwj:

       • Domain d4bwja1: 4bwj A:294-422 [265957] Other proteins in same PDB: d4bwja2 automated match to d1bgxt3 protein/DNA complex; complexed with dct, mg; mutant

    4. Domain for 4bwm:

       • Domain d4bwma1: 4bwm A:295-422 [265959] Other proteins in same PDB: d4bwma2 automated match to d1bgxt3 protein/DNA complex; protein/RNA complex; complexed with cl, dct, fmt, mg; mutant

26. uncultured organism [TaxId:155900] [233764] (1 PDB entry)

    • Domains for 3u3g:

      1. Domain d3u3ga_: 3u3g A: [233765] automated match to d3h08b_ complexed with cl, unl

      2. Domain d3u3gb_: 3u3g B: [233766] automated match to d3h08b_ complexed with cl, unl

      3. Domain d3u3gc_: 3u3g C: [233767] automated match to d3h08b_ complexed with cl, unl

      4. Domain d3u3gd_: 3u3g D: [239843] automated match to d3u3ga_ complexed with cl, unl

27. Xanthomonas campestris pv. campestris [TaxId:340] [187742] (1 PDB entry)

    • Domain for 2gbz:

      • Domain d2gbza_: 2gbz A: [164664] automated match to d1ytaa1 complexed with mg

28. Xenotropic mulv-related virus vp35 [TaxId:356663] [226326] (3 PDB entries)

    1. Domain for 3v1o:

       • Domain d3v1oa_: 3v1o A: [233825] automated match to d4e89a_ complexed with gol, mrd, so4

    2. Domain for 3v1q:

       • Domain d3v1qa_: 3v1q A: [217596] automated match to d4e89a_

    3. Domain for 3v1r:

       • Domain d3v1ra_: 3v1r A: [250299] automated match to d3v1oa_ complexed with jth, mn, mrd, so4

29. Xenotropic mulv-related virus [TaxId:373193] [194522] (1 PDB entry)

    • Domain for 4e89:

      • Domain d4e89a_: 4e89 A: [194523] automated match to d1jl2c_ complexed with cd, mg

30. Xenotropic mulv-related virus [TaxId:438045] [225994] (1 PDB entry)

    • Domain for 3p1g:

      • Domain d3p1ga_: 3p1g A: [214620] automated match to d4e89a_ complexed with mg

More info for Protein automated matches from c.55.3.0: automated matches

Timeline for Protein automated matches from c.55.3.0: automated matches:

• Protein automated matches from c.55.3.0: automated matches first appeared in SCOPe 2.01
  
• Protein automated matches from c.55.3.0: automated matches appears in SCOPe 2.04
  
• Protein automated matches from c.55.3.0: automated matches appears in SCOPe 2.06
  
• Protein automated matches from c.55.3.0: automated matches appears in the current release, SCOPe 2.08