Lineage for Protein: automated matches

  1. Root: SCOPe 2.05
  2. 1815291Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 1857400Fold c.55: Ribonuclease H-like motif [53066] (7 superfamilies)
    3 layers: a/b/a; mixed beta-sheet of 5 strands, order 32145; strand 2 is antiparallel to the rest
  4. 1859086Superfamily c.55.3: Ribonuclease H-like [53098] (15 families) (S)
    consists of one domain of this fold
  5. 1860195Family c.55.3.0: automated matches [191357] (1 protein)
    not a true family
  6. 1860196Protein automated matches [190396] (30 species)
    not a true protein

Species:

  1. 1860197Acinetobacter baumannii [TaxId:470] [276138] (1 PDB entry)
  2. 1860204Archaeoglobus fulgidus [TaxId:2234] [256016] (1 PDB entry)
  3. 1860208Bovine immunodeficiency virus [TaxId:417296] [225970] (2 PDB entries)
    1. Domain for 3kkr:
    2. Domains for 3kks:
      1. 1860209Domain d3kksa_: 3kks A: [212402]
        automated match to d4jlha_
        complexed with act, gol
      2. 1860210Domain d3kksb_: 3kks B: [212403]
        automated match to d4jlha_
        complexed with act, gol
  4. 1860212Chlorobaculum tepidum [TaxId:1097] [225664] (1 PDB entry)
  5. 1860215Feline immunodeficiency virus [TaxId:11674] [259692] (1 PDB entry)
  6. 1860217Fission yeast (Schizosaccharomyces pombe) [TaxId:4896] [255540] (3 PDB entries)
    1. Domain for 2p51:
    2. Domain for 3g0z:
    3. Domain for 3g10:
  7. 1860221Geobacillus kaustophilus [TaxId:1462] [233272] (8 PDB entries)
    1. Domains for 3pv8:
      1. 1860222Domain d3pv8a1: 3pv8 A:298-468 [233274]
        Other proteins in same PDB: d3pv8a2, d3pv8d2
        automated match to d1nk4a1
        protein/DNA complex; complexed with d3t, mg, so4
      2. 1860223Domain d3pv8d1: 3pv8 D:298-468 [233273]
        Other proteins in same PDB: d3pv8a2, d3pv8d2
        automated match to d1nk4a1
        protein/DNA complex; complexed with d3t, mg, so4
    2. Domains for 3px0:
      1. 1860236Domain d3px0a1: 3px0 A:298-468 [248705]
        Other proteins in same PDB: d3px0a2, d3px0d2
        automated match to d3pv8d1
        protein/DNA complex; complexed with dcp, mn, so4
      2. 1860237Domain d3px0d1: 3px0 D:298-468 [248707]
        Other proteins in same PDB: d3px0a2, d3px0d2
        automated match to d3pv8d1
        protein/DNA complex; complexed with dcp, mn, so4
    3. Domains for 3px4:
      1. 1860234Domain d3px4a1: 3px4 A:298-468 [248709]
        Other proteins in same PDB: d3px4a2, d3px4d2
        automated match to d3pv8d1
        protein/DNA complex; complexed with dct, mg, so4
      2. 1860235Domain d3px4d1: 3px4 D:298-468 [248711]
        Other proteins in same PDB: d3px4a2, d3px4d2
        automated match to d3pv8d1
        protein/DNA complex; complexed with dct, mg, so4
    4. Domains for 3px6:
      1. 1860224Domain d3px6a1: 3px6 A:298-468 [248713]
        Other proteins in same PDB: d3px6a2, d3px6d2
        automated match to d3pv8d1
        protein/DNA complex; complexed with dct, mn, so4
      2. 1860225Domain d3px6d1: 3px6 D:296-468 [248715]
        Other proteins in same PDB: d3px6a2, d3px6d2
        automated match to d3pv8d1
        protein/DNA complex; complexed with dct, mn, so4
    5. Domains for 4dse:
      1. 1860232Domain d4dsea1: 4dse A:297-468 [251537]
        Other proteins in same PDB: d4dsea2, d4dsed2
        automated match to d3pv8d1
        protein/DNA complex; complexed with ctp, so4
      2. 1860233Domain d4dsed1: 4dse D:298-468 [251539]
        Other proteins in same PDB: d4dsea2, d4dsed2
        automated match to d3pv8d1
        protein/DNA complex; complexed with ctp, so4
    6. Domains for 4dsf:
      1. 1860230Domain d4dsfa1: 4dsf A:297-468 [251541]
        Other proteins in same PDB: d4dsfa2, d4dsfd2
        automated match to d3pv8d1
        protein/DNA complex; complexed with ctp, so4
      2. 1860231Domain d4dsfd1: 4dsf D:298-468 [251543]
        Other proteins in same PDB: d4dsfa2, d4dsfd2
        automated match to d3pv8d1
        protein/DNA complex; complexed with ctp, so4
    7. Domains for 4ez6:
      1. 1860228Domain d4ez6a1: 4ez6 A:297-468 [251825]
        Other proteins in same PDB: d4ez6a2, d4ez6d2
        automated match to d3pv8d1
        protein/DNA complex; complexed with dg3, mpd, so4
      2. 1860229Domain d4ez6d1: 4ez6 D:297-468 [251827]
        Other proteins in same PDB: d4ez6a2, d4ez6d2
        automated match to d3pv8d1
        protein/DNA complex; complexed with dg3, mpd, so4
    8. Domains for 4ez9:
      1. 1860226Domain d4ez9a1: 4ez9 A:298-468 [251829]
        Other proteins in same PDB: d4ez9a2, d4ez9d2
        automated match to d3pv8d1
        protein/DNA complex; complexed with d3t, mpd, so4
      2. 1860227Domain d4ez9d1: 4ez9 D:298-468 [251831]
        Other proteins in same PDB: d4ez9a2, d4ez9d2
        automated match to d3pv8d1
        protein/DNA complex; complexed with d3t, mpd, so4
  8. 1860238Geobacillus kaustophilus [TaxId:235909] [226399] (6 PDB entries)
    1. Domains for 4dqp:
      1. 1860246Domain d4dqpa1: 4dqp A:297-468 [219946]
        Other proteins in same PDB: d4dqpa2, d4dqpd2
        automated match to d1nk4a1
        protein/DNA complex; complexed with dct, mg, so4
      2. 1860247Domain d4dqpd1: 4dqp D:298-468 [219948]
        Other proteins in same PDB: d4dqpa2, d4dqpd2
        automated match to d1nk4a1
        protein/DNA complex; complexed with dct, mg, so4
    2. Domains for 4dqq:
      1. 1860239Domain d4dqqa1: 4dqq A:297-468 [219950]
        Other proteins in same PDB: d4dqqa2, d4dqqd2
        automated match to d1nk4a1
        protein/DNA complex; complexed with ctp, mes, mg, mpd, so4
      2. 1860240Domain d4dqqd1: 4dqq D:293-468 [219952]
        Other proteins in same PDB: d4dqqa2, d4dqqd2
        automated match to d1nk4a1
        protein/DNA complex; complexed with ctp, mes, mg, mpd, so4
    3. Domains for 4dqr:
      1. 1860248Domain d4dqra1: 4dqr A:297-468 [219954]
        Other proteins in same PDB: d4dqra2, d4dqrd2
        automated match to d1nk4a1
        protein/DNA complex; complexed with ctp, mn, mpd, so4
      2. 1860249Domain d4dqrd1: 4dqr D:298-468 [219956]
        Other proteins in same PDB: d4dqra2, d4dqrd2
        automated match to d1nk4a1
        protein/DNA complex; complexed with ctp, mn, mpd, so4
    4. Domain for 4dqs:
    5. Domains for 4ds4:
      1. 1860242Domain d4ds4a1: 4ds4 A:297-468 [219990]
        Other proteins in same PDB: d4ds4a2, d4ds4d2
        automated match to d1nk4a1
        protein/DNA complex; complexed with so4
      2. 1860243Domain d4ds4d1: 4ds4 D:296-468 [219992]
        Other proteins in same PDB: d4ds4a2, d4ds4d2
        automated match to d1nk4a1
        protein/DNA complex; complexed with so4
    6. Domains for 4ds5:
      1. 1860244Domain d4ds5a1: 4ds5 A:297-468 [219994]
        Other proteins in same PDB: d4ds5a2, d4ds5d2
        automated match to d1nk4a1
        protein/DNA complex; complexed with so4
      2. 1860245Domain d4ds5d1: 4ds5 D:296-468 [219996]
        Other proteins in same PDB: d4ds5a2, d4ds5d2
        automated match to d1nk4a1
        protein/DNA complex; complexed with so4
  9. 1860250Geobacillus sp. [TaxId:129337] [233669] (4 PDB entries)
    1. Domain for 3tan:
    2. Domain for 3tap:
    3. Domain for 3taq:
    4. Domain for 3tar:
  10. 1860255Geobacillus stearothermophilus [TaxId:1422] [255224] (2 PDB entries)
    1. Domain for 2hw3:
    2. Domain for 4o0i:
  11. 1860258Hiv-1 m:b_hxb2r [TaxId:11706] [225268] (21 PDB entries)
    1. Domain for 2opp:
    2. Domain for 2opq:
    3. Domain for 2opr:
    4. Domain for 2ops:
    5. Domain for 2rf2:
    6. Domain for 2ynf:
    7. Domain for 2yng:
    8. Domain for 2ynh:
    9. Domain for 2yni:
    10. Domain for 3c6t:
    11. Domain for 3c6u:
    12. Domain for 3ffi:
    13. Domain for 3i0r:
    14. Domain for 3i0s:
    15. Domain for 3med:
    16. Domain for 3meg:
    17. Domain for 3t19:
    18. Domain for 3t1a:
    19. Domain for 3tam:
    20. Domain for 4kv8:
    21. Domain for 4ncg:
  12. 1860280Human (Homo sapiens) [TaxId:9606] [225370] (2 PDB entries)
    1. Domain for 2qk9:
      • 1860283Domain d2qk9a_: 2qk9 A: [205832]
        automated match to d2zqba_
        protein/DNA complex; protein/RNA complex; complexed with 16d, flc, gol, na, so4; mutant
    2. Domains for 2qkb:
      1. 1860281Domain d2qkba_: 2qkb A: [205833]
        automated match to d2zqba_
        protein/DNA complex; protein/RNA complex; complexed with edo, so4; mutant
      2. 1860282Domain d2qkbb_: 2qkb B: [205834]
        automated match to d2zqba_
        protein/DNA complex; protein/RNA complex; complexed with edo, so4; mutant
  13. 1860284Human immunodeficiency virus 1 [TaxId:11676] [225129] (15 PDB entries)
    1. Domain for 2hnd:
    2. Domain for 2hny:
    3. Domain for 2hnz:
    4. Domain for 2i5j:
    5. Domain for 2jle:
    6. Domain for 2vg5:
    7. Domain for 2vg6:
    8. Domain for 2vg7:
    9. Domain for 2zd1:
    10. Domain for 2ze2:
    11. Domain for 3bgr:
    12. Domain for 4kko:
    13. Domain for 4lsl:
    14. Domain for 4mfb:
    15. Domain for 4zhr:
  14. 1860300Human immunodeficiency virus type 1 bh10 [TaxId:11678] [225195] (19 PDB entries)
    1. Domain for 2iaj:
    2. Domain for 2ic3:
    3. Domain for 2ykm:
    4. Domain for 2ykn:
    5. Domain for 3dlk:
    6. Domain for 3ig1:
    7. Domain for 3irx:
    8. Domain for 3is9:
    9. Domain for 3qo9:
    10. Domain for 4h4o:
    11. Domain for 4i2p:
    12. Domain for 4i2q:
    13. Domain for 4o44:
    14. Domain for 4o4g:
    15. Domain for 4rw4:
    16. Domain for 4rw6:
    17. Domain for 4rw7:
    18. Domain for 4rw8:
    19. Domain for 4rw9:
  15. 1860320Human immunodeficiency virus type 1 group m subtype b (isolate bh10) [TaxId:11678] [275362] (2 PDB entries)
    1. Domain for 5c24:
    2. Domain for 5c25:
  16. 1860323Human immunodeficiency virus type 1 group m subtype b [TaxId:11678] [261468] (1 PDB entry)
  17. 1860325Human immunodeficiency virus type 1 [TaxId:11678] [225971] (18 PDB entries)
    1. Domain for 3kli:
    2. Domain for 3qlh:
    3. Domain for 4dg1:
    4. Domain for 4g1q:
    5. Domain for 4h4m:
    6. Domain for 4icl:
    7. Domain for 4id5:
    8. Domain for 4idk:
    9. Domain for 4ifv:
    10. Domain for 4ify:
    11. Domain for 4ig0:
    12. Domain for 4ig3:
    13. Domain for 4kfb:
    14. Domain for 4ko0:
    15. Domain for 4lsn:
    16. Domains for 4pqu:
      1. 1860338Domain d4pqua2: 4pqu A:430-545 [257525]
        Other proteins in same PDB: d4pqua1, d4pqub_, d4pquc1, d4pqud_
        automated match to d2ykna2
        protein/DNA complex; protein/RNA complex; complexed with dtp, edo, gol, mg, so4
      2. 1860339Domain d4pquc2: 4pqu C:430-545 [258230]
        Other proteins in same PDB: d4pqua1, d4pqub_, d4pquc1, d4pqud_
        automated match to d2ykna2
        protein/DNA complex; protein/RNA complex; complexed with dtp, edo, gol, mg, so4
    17. Domains for 4puo:
      1. 1860342Domain d4puoa2: 4puo A:430-554 [263570]
        Other proteins in same PDB: d4puoa1, d4puob_, d4puoc1, d4puod_
        automated match to d2ykna2
        protein/DNA complex; protein/RNA complex; complexed with nvp
      2. 1860343Domain d4puoc2: 4puo C:430-554 [263572]
        Other proteins in same PDB: d4puoa1, d4puob_, d4puoc1, d4puod_
        automated match to d2ykna2
        protein/DNA complex; protein/RNA complex; complexed with nvp
    18. Domains for 4pwd:
      1. 1860344Domain d4pwda2: 4pwd A:430-554 [263580]
        Other proteins in same PDB: d4pwda1, d4pwdb_, d4pwdc1, d4pwdd_
        automated match to d2ykna2
        protein/DNA complex; protein/RNA complex; complexed with ca, nvp, so4
      2. 1860345Domain d4pwdc2: 4pwd C:430-554 [263582]
        Other proteins in same PDB: d4pwda1, d4pwdb_, d4pwdc1, d4pwdd_
        automated match to d2ykna2
        protein/DNA complex; protein/RNA complex; complexed with ca, nvp, so4
  18. 1860347Human immunodeficiency virus type 1 [TaxId:11706] [225515] (19 PDB entries)
    1. Domain for 3di6:
    2. Domain for 3dm2:
    3. Domain for 3dmj:
    4. Domain for 3dok:
    5. Domain for 3drp:
    6. Domain for 3drr:
    7. Domain for 3drs:
    8. Domain for 3dya:
    9. Domain for 3e01:
    10. Domain for 3kjv:
    11. Domain for 3kk1:
    12. Domain for 3kk2:
    13. Domain for 3kk3:
    14. Domain for 3lp0:
    15. Domain for 3lp1:
    16. Domain for 3lp2:
    17. Domain for 3m8p:
    18. Domain for 3m8q:
    19. Domain for 3nbp:
  19. 1860367Methylocaldum szegediense [TaxId:73780] [269348] (1 PDB entry)
  20. 1860369Moloney murine leukemia virus [TaxId:11801] [225127] (1 PDB entry)
  21. 1860371Mouse (Mus musculus) [TaxId:10090] [187264] (6 PDB entries)
    1. Domain for 2ioc:
    2. Domains for 2o4g:
      1. 1860379Domain d2o4gb_: 2o4g B: [148585]
        Other proteins in same PDB: d2o4ga1
        automated match to d1y97a1
        protein/DNA complex; complexed with mg, tmp
      2. 1860380Domain d2o4gc_: 2o4g C: [148586]
        Other proteins in same PDB: d2o4ga1
        automated match to d1y97a1
        protein/DNA complex; complexed with mg, tmp
      3. 1860381Domain d2o4gd_: 2o4g D: [148587]
        Other proteins in same PDB: d2o4ga1
        automated match to d1y97a1
        protein/DNA complex; complexed with mg, tmp
    3. Domains for 2oa8:
      1. 1860377Domain d2oa8a_: 2oa8 A: [148693]
        automated match to d1y97a1
        protein/DNA complex; complexed with ca
      2. 1860378Domain d2oa8b_: 2oa8 B: [148694]
        automated match to d1y97a1
        protein/DNA complex; complexed with ca
    4. Domains for 3b6o:
      1. 1860372Domain d3b6oa_: 3b6o A: [154901]
        automated match to d1y97a1
        protein/DNA complex; complexed with li, tmp
      2. 1860373Domain d3b6ob_: 3b6o B: [154902]
        automated match to d1y97a1
        protein/DNA complex; complexed with li, tmp
      3. 1860374Domain d3b6oc_: 3b6o C: [154903]
        automated match to d1y97a1
        protein/DNA complex; complexed with li, tmp
      4. 1860375Domain d3b6od_: 3b6o D: [154904]
        automated match to d1y97a1
        protein/DNA complex; complexed with li, tmp
    5. Domains for 3b6p:
      1. 1860382Domain d3b6pa_: 3b6p A: [154905]
        automated match to d1y97a1
        protein/DNA complex; complexed with na, tmp, zn
      2. 1860383Domain d3b6pb_: 3b6p B: [154906]
        automated match to d1y97a1
        protein/DNA complex; complexed with na, tmp, zn
      3. 1860384Domain d3b6pc_: 3b6p C: [154907]
        automated match to d1y97a1
        protein/DNA complex; complexed with na, tmp, zn
      4. 1860385Domain d3b6pd_: 3b6p D: [154908]
        automated match to d1y97a1
        protein/DNA complex; complexed with na, tmp, zn
    6. Domains for 3u6f:
      1. 1860386Domain d3u6fa_: 3u6f A: [250093]
        automated match to d2oa8b_
        protein/DNA complex; complexed with bu1, mg; mutant
      2. 1860387Domain d3u6fb_: 3u6f B: [250094]
        automated match to d2oa8b_
        protein/DNA complex; complexed with bu1, mg; mutant
  22. 1860388Pyrococcus furiosus [TaxId:2261] [224898] (3 PDB entries)
    1. Domain for 2jgu:
    2. Domain for 3a2f:
    3. Domains for 4ahc:
      1. 1860389Domain d4ahca1: 4ahc A:1-347 [218866]
        Other proteins in same PDB: d4ahca2, d4ahcb2
        automated match to d2vwja1
        complexed with gol
      2. 1860390Domain d4ahcb1: 4ahc B:1-347 [218868]
        Other proteins in same PDB: d4ahca2, d4ahcb2
        automated match to d2vwja1
        complexed with gol
  23. 1860393Sulfolobus tokodaii [TaxId:273063] [255750] (2 PDB entries)
    1. Domain for 2ehg:
    2. Domains for 3aly:
      1. 1860395Domain d3alya_: 3aly A: [245170]
        automated match to d3u3ga_
      2. 1860396Domain d3alyb_: 3aly B: [245171]
        automated match to d3u3ga_
  24. 1860397Thermococcus kodakarensis [TaxId:69014] [226698] (1 PDB entry)
  25. 1860399Thermus aquaticus [TaxId:271] [267867] (4 PDB entries)
    1. Domain for 3po4:
    2. Domain for 3po5:
    3. Domain for 4bwj:
    4. Domain for 4bwm:
      • 1860402Domain d4bwma1: 4bwm A:295-422 [265959]
        Other proteins in same PDB: d4bwma2
        automated match to d1bgxt3
        protein/DNA complex; protein/RNA complex; complexed with cl, dct, fmt, mg; mutant
  26. 1860404uncultured organism [TaxId:155900] [233764] (1 PDB entry)
  27. 1860409Xanthomonas campestris pv. campestris [TaxId:340] [187742] (1 PDB entry)
  28. 1860411Xenotropic mulv-related virus vp35 [TaxId:356663] [226326] (3 PDB entries)
    1. Domain for 3v1o:
    2. Domain for 3v1q:
    3. Domain for 3v1r:
  29. 1860415Xenotropic mulv-related virus [TaxId:373193] [194522] (1 PDB entry)
  30. 1860417Xenotropic mulv-related virus [TaxId:438045] [225994] (1 PDB entry)

More info for Protein automated matches from c.55.3.0: automated matches

Timeline for Protein automated matches from c.55.3.0: automated matches: