Lineage for Protein: automated matches

  1. Root: SCOPe 2.04
  2. 1565955Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 1605035Fold c.55: Ribonuclease H-like motif [53066] (7 superfamilies)
    3 layers: a/b/a; mixed beta-sheet of 5 strands, order 32145; strand 2 is antiparallel to the rest
  4. 1606596Superfamily c.55.3: Ribonuclease H-like [53098] (15 families) (S)
    consists of one domain of this fold
  5. 1607696Family c.55.3.0: automated matches [191357] (1 protein)
    not a true family
  6. 1607697Protein automated matches [190396] (26 species)
    not a true protein

Species:

  1. 1607698Archaeoglobus fulgidus [TaxId:2234] [256016] (1 PDB entry)
  2. 1607702Bovine immunodeficiency virus [TaxId:417296] [225970] (2 PDB entries)
    1. Domain for 3kkr:
    2. Domains for 3kks:
      1. 1607703Domain d3kksa_: 3kks A: [212402]
        automated match to d4jlha_
        complexed with act, gol
      2. 1607704Domain d3kksb_: 3kks B: [212403]
        automated match to d4jlha_
        complexed with act, gol
  3. 1607706Chlorobaculum tepidum [TaxId:1097] [225664] (1 PDB entry)
  4. 1607709Feline immunodeficiency virus [TaxId:11674] [259692] (1 PDB entry)
  5. 1607711Fission yeast (Schizosaccharomyces pombe) [TaxId:4896] [255540] (3 PDB entries)
    1. Domain for 2p51:
    2. Domain for 3g0z:
    3. Domain for 3g10:
  6. 1607715Geobacillus kaustophilus [TaxId:1462] [233272] (8 PDB entries)
    1. Domains for 3pv8:
      1. 1607716Domain d3pv8a1: 3pv8 A:298-468 [233274]
        Other proteins in same PDB: d3pv8a2, d3pv8d2
        automated match to d1nk4a1
        protein/DNA complex; complexed with d3t, mg, so4
      2. 1607717Domain d3pv8d1: 3pv8 D:298-468 [233273]
        Other proteins in same PDB: d3pv8a2, d3pv8d2
        automated match to d1nk4a1
        protein/DNA complex; complexed with d3t, mg, so4
    2. Domains for 3px0:
      1. 1607730Domain d3px0a1: 3px0 A:298-468 [248705]
        Other proteins in same PDB: d3px0a2, d3px0d2
        automated match to d3pv8d1
        protein/DNA complex; complexed with dcp, mn, so4
      2. 1607731Domain d3px0d1: 3px0 D:298-468 [248707]
        Other proteins in same PDB: d3px0a2, d3px0d2
        automated match to d3pv8d1
        protein/DNA complex; complexed with dcp, mn, so4
    3. Domains for 3px4:
      1. 1607728Domain d3px4a1: 3px4 A:298-468 [248709]
        Other proteins in same PDB: d3px4a2, d3px4d2
        automated match to d3pv8d1
        protein/DNA complex; complexed with dct, mg, so4
      2. 1607729Domain d3px4d1: 3px4 D:298-468 [248711]
        Other proteins in same PDB: d3px4a2, d3px4d2
        automated match to d3pv8d1
        protein/DNA complex; complexed with dct, mg, so4
    4. Domains for 3px6:
      1. 1607718Domain d3px6a1: 3px6 A:298-468 [248713]
        Other proteins in same PDB: d3px6a2, d3px6d2
        automated match to d3pv8d1
        protein/DNA complex; complexed with dct, mn, so4
      2. 1607719Domain d3px6d1: 3px6 D:296-468 [248715]
        Other proteins in same PDB: d3px6a2, d3px6d2
        automated match to d3pv8d1
        protein/DNA complex; complexed with dct, mn, so4
    5. Domains for 4dse:
      1. 1607726Domain d4dsea1: 4dse A:297-468 [251537]
        Other proteins in same PDB: d4dsea2, d4dsed2
        automated match to d3pv8d1
        protein/DNA complex; complexed with ctp, so4
      2. 1607727Domain d4dsed1: 4dse D:298-468 [251539]
        Other proteins in same PDB: d4dsea2, d4dsed2
        automated match to d3pv8d1
        protein/DNA complex; complexed with ctp, so4
    6. Domains for 4dsf:
      1. 1607724Domain d4dsfa1: 4dsf A:297-468 [251541]
        Other proteins in same PDB: d4dsfa2, d4dsfd2
        automated match to d3pv8d1
        protein/DNA complex; complexed with ctp, so4
      2. 1607725Domain d4dsfd1: 4dsf D:298-468 [251543]
        Other proteins in same PDB: d4dsfa2, d4dsfd2
        automated match to d3pv8d1
        protein/DNA complex; complexed with ctp, so4
    7. Domains for 4ez6:
      1. 1607722Domain d4ez6a1: 4ez6 A:297-468 [251825]
        Other proteins in same PDB: d4ez6a2, d4ez6d2
        automated match to d3pv8d1
        protein/DNA complex; complexed with dg3, mpd, so4
      2. 1607723Domain d4ez6d1: 4ez6 D:297-468 [251827]
        Other proteins in same PDB: d4ez6a2, d4ez6d2
        automated match to d3pv8d1
        protein/DNA complex; complexed with dg3, mpd, so4
    8. Domains for 4ez9:
      1. 1607720Domain d4ez9a1: 4ez9 A:298-468 [251829]
        Other proteins in same PDB: d4ez9a2, d4ez9d2
        automated match to d3pv8d1
        protein/DNA complex; complexed with d3t, mpd, so4
      2. 1607721Domain d4ez9d1: 4ez9 D:298-468 [251831]
        Other proteins in same PDB: d4ez9a2, d4ez9d2
        automated match to d3pv8d1
        protein/DNA complex; complexed with d3t, mpd, so4
  7. 1607732Geobacillus kaustophilus [TaxId:235909] [226399] (6 PDB entries)
    1. Domains for 4dqp:
      1. 1607740Domain d4dqpa1: 4dqp A:297-468 [219946]
        Other proteins in same PDB: d4dqpa2, d4dqpd2
        automated match to d1nk4a1
        protein/DNA complex; complexed with dct, mg, so4
      2. 1607741Domain d4dqpd1: 4dqp D:298-468 [219948]
        Other proteins in same PDB: d4dqpa2, d4dqpd2
        automated match to d1nk4a1
        protein/DNA complex; complexed with dct, mg, so4
    2. Domains for 4dqq:
      1. 1607733Domain d4dqqa1: 4dqq A:297-468 [219950]
        Other proteins in same PDB: d4dqqa2, d4dqqd2
        automated match to d1nk4a1
        protein/DNA complex; complexed with ctp, mes, mg, mpd, so4
      2. 1607734Domain d4dqqd1: 4dqq D:293-468 [219952]
        Other proteins in same PDB: d4dqqa2, d4dqqd2
        automated match to d1nk4a1
        protein/DNA complex; complexed with ctp, mes, mg, mpd, so4
    3. Domains for 4dqr:
      1. 1607742Domain d4dqra1: 4dqr A:297-468 [219954]
        Other proteins in same PDB: d4dqra2, d4dqrd2
        automated match to d1nk4a1
        protein/DNA complex; complexed with ctp, mn, mpd, so4
      2. 1607743Domain d4dqrd1: 4dqr D:298-468 [219956]
        Other proteins in same PDB: d4dqra2, d4dqrd2
        automated match to d1nk4a1
        protein/DNA complex; complexed with ctp, mn, mpd, so4
    4. Domain for 4dqs:
    5. Domains for 4ds4:
      1. 1607736Domain d4ds4a1: 4ds4 A:297-468 [219990]
        Other proteins in same PDB: d4ds4a2, d4ds4d2
        automated match to d1nk4a1
        protein/DNA complex; complexed with so4
      2. 1607737Domain d4ds4d1: 4ds4 D:296-468 [219992]
        Other proteins in same PDB: d4ds4a2, d4ds4d2
        automated match to d1nk4a1
        protein/DNA complex; complexed with so4
    6. Domains for 4ds5:
      1. 1607738Domain d4ds5a1: 4ds5 A:297-468 [219994]
        Other proteins in same PDB: d4ds5a2, d4ds5d2
        automated match to d1nk4a1
        protein/DNA complex; complexed with so4
      2. 1607739Domain d4ds5d1: 4ds5 D:296-468 [219996]
        Other proteins in same PDB: d4ds5a2, d4ds5d2
        automated match to d1nk4a1
        protein/DNA complex; complexed with so4
  8. 1607744Geobacillus sp. [TaxId:129337] [233669] (4 PDB entries)
    1. Domain for 3tan:
    2. Domain for 3tap:
    3. Domain for 3taq:
    4. Domain for 3tar:
  9. 1607749Geobacillus stearothermophilus [TaxId:1422] [255224] (2 PDB entries)
    1. Domain for 2hw3:
    2. Domain for 4o0i:
  10. 1607752Hiv-1 m:b_hxb2r [TaxId:11706] [225268] (21 PDB entries)
    1. Domain for 2opp:
    2. Domain for 2opq:
    3. Domain for 2opr:
    4. Domain for 2ops:
    5. Domain for 2rf2:
    6. Domain for 2ynf:
    7. Domain for 2yng:
    8. Domain for 2ynh:
    9. Domain for 2yni:
    10. Domain for 3c6t:
    11. Domain for 3c6u:
    12. Domain for 3ffi:
    13. Domain for 3i0r:
    14. Domain for 3i0s:
    15. Domain for 3med:
    16. Domain for 3meg:
    17. Domain for 3t19:
    18. Domain for 3t1a:
    19. Domain for 3tam:
    20. Domain for 4kv8:
    21. Domain for 4ncg:
  11. 1607774Human (Homo sapiens) [TaxId:9606] [225370] (2 PDB entries)
    1. Domain for 2qk9:
      • 1607777Domain d2qk9a_: 2qk9 A: [205832]
        automated match to d2zqba_
        protein/DNA complex; protein/RNA complex; complexed with 16d, flc, gol, na, so4; mutant
    2. Domains for 2qkb:
      1. 1607775Domain d2qkba_: 2qkb A: [205833]
        automated match to d2zqba_
        protein/DNA complex; protein/RNA complex; complexed with edo, so4; mutant
      2. 1607776Domain d2qkbb_: 2qkb B: [205834]
        automated match to d2zqba_
        protein/DNA complex; protein/RNA complex; complexed with edo, so4; mutant
  12. 1607778Human immunodeficiency virus 1 [TaxId:11676] [225129] (14 PDB entries)
    1. Domain for 2hnd:
    2. Domain for 2hny:
    3. Domain for 2hnz:
    4. Domain for 2i5j:
    5. Domain for 2jle:
    6. Domain for 2vg5:
    7. Domain for 2vg6:
    8. Domain for 2vg7:
    9. Domain for 2zd1:
    10. Domain for 2ze2:
    11. Domain for 3bgr:
    12. Domain for 4kko:
    13. Domain for 4lsl:
    14. Domain for 4mfb:
  13. 1607793Human immunodeficiency virus type 1 bh10 [TaxId:11678] [225195] (14 PDB entries)
    1. Domain for 2iaj:
    2. Domain for 2ic3:
    3. Domain for 2ykm:
    4. Domain for 2ykn:
    5. Domain for 3dlk:
    6. Domain for 3ig1:
    7. Domain for 3irx:
    8. Domain for 3is9:
    9. Domain for 3qo9:
    10. Domain for 4h4o:
    11. Domain for 4i2p:
    12. Domain for 4i2q:
    13. Domain for 4o44:
    14. Domain for 4o4g:
  14. 1607808Human immunodeficiency virus type 1 group m subtype b [TaxId:11678] [261468] (1 PDB entry)
  15. 1607810Human immunodeficiency virus type 1 [TaxId:11678] [225971] (15 PDB entries)
    1. Domain for 3kli:
    2. Domain for 3qlh:
    3. Domain for 4dg1:
    4. Domain for 4g1q:
    5. Domain for 4h4m:
    6. Domain for 4icl:
    7. Domain for 4id5:
    8. Domain for 4idk:
    9. Domain for 4ifv:
    10. Domain for 4ify:
    11. Domain for 4ig0:
    12. Domain for 4ig3:
    13. Domain for 4kfb:
    14. Domain for 4ko0:
    15. Domains for 4pqu:
      1. 1607823Domain d4pqua2: 4pqu A:430-545 [257525]
        Other proteins in same PDB: d4pqua1, d4pqub_, d4pqud_
        automated match to d2ykna2
        protein/DNA complex; protein/RNA complex; complexed with dtp, edo, gol, mg, so4
      2. 1607824Domain d4pquc2: 4pqu C:430-545 [258230]
        Other proteins in same PDB: d4pquc1
        automated match to d2ykna2
        protein/DNA complex; protein/RNA complex; complexed with dtp, edo, gol, mg, so4
  16. 1607827Human immunodeficiency virus type 1 [TaxId:11706] [225515] (19 PDB entries)
    1. Domain for 3di6:
    2. Domain for 3dm2:
    3. Domain for 3dmj:
    4. Domain for 3dok:
    5. Domain for 3drp:
    6. Domain for 3drr:
    7. Domain for 3drs:
    8. Domain for 3dya:
    9. Domain for 3e01:
    10. Domain for 3kjv:
    11. Domain for 3kk1:
    12. Domain for 3kk2:
    13. Domain for 3kk3:
    14. Domain for 3lp0:
    15. Domain for 3lp1:
    16. Domain for 3lp2:
    17. Domain for 3m8p:
    18. Domain for 3m8q:
    19. Domain for 3nbp:
  17. 1607847Moloney murine leukemia virus [TaxId:11801] [225127] (1 PDB entry)
  18. 1607849Mouse (Mus musculus) [TaxId:10090] [187264] (6 PDB entries)
    1. Domain for 2ioc:
    2. Domains for 2o4g:
      1. 1607857Domain d2o4gb_: 2o4g B: [148585]
        Other proteins in same PDB: d2o4ga1
        automated match to d1y97a1
        protein/DNA complex; complexed with mg, tmp
      2. 1607858Domain d2o4gc_: 2o4g C: [148586]
        Other proteins in same PDB: d2o4ga1
        automated match to d1y97a1
        protein/DNA complex; complexed with mg, tmp
      3. 1607859Domain d2o4gd_: 2o4g D: [148587]
        Other proteins in same PDB: d2o4ga1
        automated match to d1y97a1
        protein/DNA complex; complexed with mg, tmp
    3. Domains for 2oa8:
      1. 1607855Domain d2oa8a_: 2oa8 A: [148693]
        automated match to d1y97a1
        protein/DNA complex; complexed with ca
      2. 1607856Domain d2oa8b_: 2oa8 B: [148694]
        automated match to d1y97a1
        protein/DNA complex; complexed with ca
    4. Domains for 3b6o:
      1. 1607850Domain d3b6oa_: 3b6o A: [154901]
        automated match to d1y97a1
        protein/DNA complex; complexed with li, tmp
      2. 1607851Domain d3b6ob_: 3b6o B: [154902]
        automated match to d1y97a1
        protein/DNA complex; complexed with li, tmp
      3. 1607852Domain d3b6oc_: 3b6o C: [154903]
        automated match to d1y97a1
        protein/DNA complex; complexed with li, tmp
      4. 1607853Domain d3b6od_: 3b6o D: [154904]
        automated match to d1y97a1
        protein/DNA complex; complexed with li, tmp
    5. Domains for 3b6p:
      1. 1607860Domain d3b6pa_: 3b6p A: [154905]
        automated match to d1y97a1
        protein/DNA complex; complexed with na, tmp, zn
      2. 1607861Domain d3b6pb_: 3b6p B: [154906]
        automated match to d1y97a1
        protein/DNA complex; complexed with na, tmp, zn
      3. 1607862Domain d3b6pc_: 3b6p C: [154907]
        automated match to d1y97a1
        protein/DNA complex; complexed with na, tmp, zn
      4. 1607863Domain d3b6pd_: 3b6p D: [154908]
        automated match to d1y97a1
        protein/DNA complex; complexed with na, tmp, zn
    6. Domains for 3u6f:
      1. 1607864Domain d3u6fa_: 3u6f A: [250093]
        automated match to d2oa8b_
        protein/DNA complex; complexed with bu1, mg; mutant
      2. 1607865Domain d3u6fb_: 3u6f B: [250094]
        automated match to d2oa8b_
        protein/DNA complex; complexed with bu1, mg; mutant
  19. 1607866Pyrococcus furiosus [TaxId:2261] [224898] (3 PDB entries)
    1. Domain for 2jgu:
    2. Domain for 3a2f:
    3. Domains for 4ahc:
      1. 1607867Domain d4ahca1: 4ahc A:1-347 [218866]
        Other proteins in same PDB: d4ahca2, d4ahcb2
        automated match to d2vwja1
        complexed with gol
      2. 1607868Domain d4ahcb1: 4ahc B:1-347 [218868]
        Other proteins in same PDB: d4ahca2, d4ahcb2
        automated match to d2vwja1
        complexed with gol
  20. 1607871Sulfolobus tokodaii [TaxId:273063] [255750] (1 PDB entry)
  21. 1607874Thermococcus kodakarensis [TaxId:69014] [226698] (1 PDB entry)
  22. 1607876uncultured organism [TaxId:155900] [233764] (1 PDB entry)
  23. 1607881Xanthomonas campestris pv. campestris [TaxId:340] [187742] (1 PDB entry)
  24. 1607883Xenotropic mulv-related virus vp35 [TaxId:356663] [226326] (3 PDB entries)
    1. Domain for 3v1o:
    2. Domain for 3v1q:
    3. Domain for 3v1r:
  25. 1607887Xenotropic mulv-related virus [TaxId:373193] [194522] (1 PDB entry)
  26. 1607889Xenotropic mulv-related virus [TaxId:438045] [225994] (1 PDB entry)

More info for Protein automated matches from c.55.3.0: automated matches

Timeline for Protein automated matches from c.55.3.0: automated matches: