Lineage for Protein: automated matches

  1. Root: SCOPe 2.07
  2. 2344607Class b: All beta proteins [48724] (178 folds)
  3. 2403751Fold b.82: Double-stranded beta-helix [51181] (7 superfamilies)
    one turn of helix is made by two pairs of antiparallel strands linked with short turns
    has appearance of a sandwich of distinct architecture and jelly-roll topology
  4. 2403752Superfamily b.82.1: RmlC-like cupins [51182] (25 families) (S)
  5. 2404400Family b.82.1.0: automated matches [191354] (1 protein)
    not a true family
  6. 2404401Protein automated matches [190388] (26 species)
    not a true protein

Species:

  1. 2404402Acinetobacter sp. [TaxId:62977] [188944] (1 PDB entry)
  2. 2404404Bacillus anthracis [TaxId:198094] [226138] (1 PDB entry)
  3. 2404407Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] [187242] (1 PDB entry)
  4. 2404409Branchiostoma belcheri [TaxId:155462] [189354] (2 PDB entries)
    1. Domain for 3loi:
    2. Domains for 3lzz:
      1. 2404411Domain d3lzza_: 3lzz A: [180676]
        automated match to d1yuda1
        complexed with act, gdp
      2. 2404412Domain d3lzzb_: 3lzz B: [180677]
        automated match to d1yuda1
        complexed with act, gdp
  5. 2404413Campylobacter jejuni [TaxId:197] [329306] (1 PDB entry)
  6. 2404418Clostridium difficile [TaxId:272563] [256193] (1 PDB entry)
  7. 2404421Cocos nucifera [TaxId:13894] [340731] (2 PDB entries)
    1. Domains for 5wpw:
      1. 2404422Domain d5wpwa1: 5wpw A:43-266 [340732]
        automated match to d1od5a1
      2. 2404423Domain d5wpwa2: 5wpw A:282-458 [340733]
        automated match to d1od5a2
      3. 2404424Domain d5wpwb1: 5wpw B:44-267 [340735]
        automated match to d1od5a1
      4. 2404425Domain d5wpwb2: 5wpw B:282-458 [340736]
        automated match to d1od5a2
    2. Domains for 5xty:
      1. 3053232Domain d5xtyb1: 5xty B:45-267 [353294]
        automated match to d5wpwa1
      2. 3053233Domain d5xtyb2: 5xty B:282-448 [353295]
        automated match to d5wpwa2
      3. 3053286Domain d5xtya1: 5xty A:45-270 [353348]
        automated match to d5wpwa1
      4. 3053287Domain d5xtya2: 5xty A:284-446 [353349]
        automated match to d5wpwa2
  8. 2404426Desulfitobacterium hafniense [TaxId:272564] [187970] (1 PDB entry)
  9. 2404429Escherichia coli [TaxId:562] [225481] (1 PDB entry)
  10. 2404431Granulicella tundricola [TaxId:1198114] [256205] (1 PDB entry)
  11. 2404440Granulicella tundricola [TaxId:940615] [268964] (1 PDB entry)
  12. 2404461Leptotrichia buccalis [TaxId:523794] [256062] (1 PDB entry)
  13. 2404464Mung bean (Vigna radiata) [TaxId:157791] [225082] (1 PDB entry)
  14. 2404467Pinus koraiensis [TaxId:88728] [236190] (1 PDB entry)
  15. 2404470Prince's feather (Amaranthus hypochondriacus) [TaxId:28502] [346264] (1 PDB entry)
  16. 2404473Pseudomonas fluorescens [TaxId:216595] [189073] (2 PDB entries)
    1. Domains for 5fcc:
      1. 2404476Domain d5fcca_: 5fcc A: [328817]
        automated match to d3esgb_
        complexed with cl, edo, na
      2. 2404477Domain d5fccb_: 5fcc B: [328893]
        automated match to d3esgb_
        complexed with cl, edo, na
    2. Domains for 5v00:
      1. 2404474Domain d5v00a_: 5v00 A: [331446]
        automated match to d3esgb_
        complexed with fmt, gol
      2. 2404475Domain d5v00b_: 5v00 B: [331471]
        automated match to d3esgb_
        complexed with fmt, gol
  17. 2404478Pseudomonas putida [TaxId:160488] [196877] (3 PDB entries)
    1. Domains for 3zds:
      1. 2404479Domain d3zdsa_: 3zds A: [218259]
        automated match to d4aq6a_
        complexed with fe, hmq, hq9, m8o, omd, oxy, po4
      2. 2404480Domain d3zdsb_: 3zds B: [218260]
        automated match to d4aq6a_
        complexed with fe, hmq, hq9, m8o, omd, oxy, po4
      3. 2404481Domain d3zdsc_: 3zds C: [218261]
        automated match to d4aq6a_
        complexed with fe, hmq, hq9, m8o, omd, oxy, po4
      4. 2404482Domain d3zdsd_: 3zds D: [218262]
        automated match to d4aq6a_
        complexed with fe, hmq, hq9, m8o, omd, oxy, po4
      5. 2404483Domain d3zdse_: 3zds E: [218263]
        automated match to d4aq6a_
        complexed with fe, hmq, hq9, m8o, omd, oxy, po4
      6. 2404484Domain d3zdsf_: 3zds F: [218264]
        automated match to d4aq6a_
        complexed with fe, hmq, hq9, m8o, omd, oxy, po4
      7. 2404485Domain d3zdsg_: 3zds G: [218265]
        automated match to d4aq6a_
        complexed with fe, hmq, hq9, m8o, omd, oxy, po4
      8. 2404486Domain d3zdsh_: 3zds H: [218266]
        automated match to d4aq6a_
        complexed with fe, hmq, hq9, m8o, omd, oxy, po4
      9. 2404487Domain d3zdsi_: 3zds I: [218267]
        automated match to d4aq6a_
        complexed with fe, hmq, hq9, m8o, omd, oxy, po4
      10. 2404488Domain d3zdsj_: 3zds J: [218268]
        automated match to d4aq6a_
        complexed with fe, hmq, hq9, m8o, omd, oxy, po4
      11. 2404489Domain d3zdsk_: 3zds K: [218269]
        automated match to d4aq6a_
        complexed with fe, hmq, hq9, m8o, omd, oxy, po4
      12. 2404490Domain d3zdsl_: 3zds L: [218270]
        automated match to d4aq6a_
        complexed with fe, hmq, hq9, m8o, omd, oxy, po4
    2. Domains for 4aq2:
      1. 2404503Domain d4aq2a_: 4aq2 A: [219098]
        automated match to d4aq6a_
        complexed with b3p, fe
      2. 2404504Domain d4aq2b_: 4aq2 B: [219099]
        automated match to d4aq6a_
        complexed with b3p, fe
      3. 2404505Domain d4aq2c_: 4aq2 C: [219100]
        automated match to d4aq6a_
        complexed with b3p, fe
      4. 2404506Domain d4aq2d_: 4aq2 D: [219101]
        automated match to d4aq6a_
        complexed with b3p, fe
      5. 2404507Domain d4aq2e_: 4aq2 E: [219102]
        automated match to d4aq6a_
        complexed with b3p, fe
      6. 2404508Domain d4aq2f_: 4aq2 F: [219103]
        automated match to d4aq6a_
        complexed with b3p, fe
      7. 2404509Domain d4aq2g_: 4aq2 G: [219104]
        automated match to d4aq6a_
        complexed with b3p, fe
      8. 2404510Domain d4aq2h_: 4aq2 H: [219105]
        automated match to d4aq6a_
        complexed with b3p, fe
      9. 2404511Domain d4aq2i_: 4aq2 I: [219106]
        automated match to d4aq6a_
        complexed with b3p, fe
      10. 2404512Domain d4aq2j_: 4aq2 J: [219107]
        automated match to d4aq6a_
        complexed with b3p, fe
      11. 2404513Domain d4aq2k_: 4aq2 K: [219108]
        automated match to d4aq6a_
        complexed with b3p, fe
      12. 2404514Domain d4aq2l_: 4aq2 L: [219109]
        automated match to d4aq6a_
        complexed with b3p, fe
    3. Domains for 4aq6:
      1. 2404491Domain d4aq6a_: 4aq6 A: [196878]
        automated match to d1eyba_
        complexed with b3p, fe, omd
      2. 2404492Domain d4aq6b_: 4aq6 B: [196879]
        automated match to d1eyba_
        complexed with b3p, fe, omd
      3. 2404493Domain d4aq6c_: 4aq6 C: [201500]
        automated match to d4aq6a_
        complexed with b3p, fe, omd
      4. 2404494Domain d4aq6d_: 4aq6 D: [201501]
        automated match to d4aq6a_
        complexed with b3p, fe, omd
      5. 2404495Domain d4aq6e_: 4aq6 E: [201502]
        automated match to d4aq6a_
        complexed with b3p, fe, omd
      6. 2404496Domain d4aq6f_: 4aq6 F: [201503]
        automated match to d4aq6a_
        complexed with b3p, fe, omd
      7. 2404497Domain d4aq6g_: 4aq6 G: [201504]
        automated match to d4aq6a_
        complexed with b3p, fe, omd
      8. 2404498Domain d4aq6h_: 4aq6 H: [201505]
        automated match to d4aq6a_
        complexed with b3p, fe, omd
      9. 2404499Domain d4aq6i_: 4aq6 I: [201506]
        automated match to d4aq6a_
        complexed with b3p, fe, omd
      10. 2404500Domain d4aq6j_: 4aq6 J: [201507]
        automated match to d4aq6a_
        complexed with b3p, fe, omd
      11. 2404501Domain d4aq6k_: 4aq6 K: [201508]
        automated match to d4aq6a_
        complexed with b3p, fe, omd
      12. 2404502Domain d4aq6l_: 4aq6 L: [201509]
        automated match to d4aq6a_
        complexed with b3p, fe, omd
  18. 2404515Pumpkin (Cucurbita maxima) [TaxId:3661] [225177] (2 PDB entries)
    1. Domains for 2e9q:
      1. 2404516Domain d2e9qa1: 2e9q A:26-254 [204082]
        automated match to d1fxza1
        complexed with cl, po4
      2. 2404517Domain d2e9qa2: 2e9q A:281-453 [204083]
        automated match to d1fxza2
        complexed with cl, po4
    2. Domains for 2evx:
      1. 2404518Domain d2evxa1: 2evx A:26-253 [204143]
        automated match to d1fxza1
        complexed with mg
      2. 2404519Domain d2evxa2: 2evx A:281-453 [204144]
        automated match to d1fxza2
        complexed with mg
  19. 2404520Solanum melongena [TaxId:4111] [342484] (1 PDB entry)
  20. 2404523Soybean (Glycine max) [TaxId:3847] [225175] (2 PDB entries)
    1. Domains for 2d5f:
      1. 2404524Domain d2d5fa1: 2d5f A:7-249 [203922]
        automated match to d1fxza1
        complexed with co3, mg
      2. 2404525Domain d2d5fa2: 2d5f A:326-493 [203923]
        automated match to d1fxza2
        complexed with co3, mg
      3. 2404526Domain d2d5fb1: 2d5f B:7-249 [203924]
        automated match to d1fxza1
        complexed with co3, mg
      4. 2404527Domain d2d5fb2: 2d5f B:326-493 [203925]
        automated match to d1fxza2
        complexed with co3, mg
    2. Domains for 2d5h:
      1. 2404528Domain d2d5ha1: 2d5h A:6-248 [203926]
        automated match to d1fxza1
        complexed with co3, mg
      2. 2404529Domain d2d5ha2: 2d5h A:326-493 [203927]
        automated match to d1fxza2
        complexed with co3, mg
      3. 2404530Domain d2d5hb1: 2d5h B:6-248 [203928]
        automated match to d1fxza1
        complexed with co3, mg
      4. 2404531Domain d2d5hb2: 2d5h B:326-493 [203929]
        automated match to d1fxza2
        complexed with co3, mg
      5. 2404532Domain d2d5hc1: 2d5h C:6-247 [203930]
        automated match to d1fxza1
        complexed with co3, mg
      6. 2404533Domain d2d5hc2: 2d5h C:326-493 [203931]
        automated match to d1fxza2
        complexed with co3, mg
      7. 2404534Domain d2d5hd1: 2d5h D:6-247 [203932]
        automated match to d1fxza1
        complexed with co3, mg
      8. 2404535Domain d2d5hd2: 2d5h D:326-493 [203933]
        automated match to d1fxza2
        complexed with co3, mg
      9. 2404536Domain d2d5he1: 2d5h E:1-248 [203934]
        automated match to d1fxza1
        complexed with co3, mg
      10. 2404537Domain d2d5he2: 2d5h E:326-493 [203935]
        automated match to d1fxza2
        complexed with co3, mg
      11. 2404538Domain d2d5hf1: 2d5h F:6-248 [203936]
        automated match to d1fxza1
        complexed with co3, mg
      12. 2404539Domain d2d5hf2: 2d5h F:326-493 [203937]
        automated match to d1fxza2
        complexed with co3, mg
  21. 2404540Streptomyces bikiniensis [TaxId:1896] [193359] (3 PDB entries)
    1. Domains for 4hmz:
      1. 2404545Domain d4hmza1: 4hmz A:1-196 [202447]
        Other proteins in same PDB: d4hmza2, d4hmzb2, d4hmzc2, d4hmzd2
        automated match to d4hmzb_
        complexed with 18t, edo
      2. 2404546Domain d4hmzb1: 4hmz B:1-196 [193361]
        Other proteins in same PDB: d4hmza2, d4hmzb2, d4hmzc2, d4hmzd2
        automated match to d2c0za1
        complexed with 18t, edo
      3. 2404547Domain d4hmzc1: 4hmz C:1-196 [202448]
        Other proteins in same PDB: d4hmza2, d4hmzb2, d4hmzc2, d4hmzd2
        automated match to d4hmzb_
        complexed with 18t, edo
      4. 2404548Domain d4hmzd1: 4hmz D:1-196 [202449]
        Other proteins in same PDB: d4hmza2, d4hmzb2, d4hmzc2, d4hmzd2
        automated match to d4hmzb_
        complexed with 18t, edo
    2. Domains for 4hn0:
      1. 2404549Domain d4hn0a1: 4hn0 A:1-196 [194294]
        Other proteins in same PDB: d4hn0a2, d4hn0b2, d4hn0c2, d4hn0d2
        automated match to d2c0za1
        complexed with cl, edo
      2. 2404550Domain d4hn0b1: 4hn0 B:1-196 [202450]
        Other proteins in same PDB: d4hn0a2, d4hn0b2, d4hn0c2, d4hn0d2
        automated match to d4hn0c_
        complexed with cl, edo
      3. 2404551Domain d4hn0c1: 4hn0 C:1-196 [194292]
        Other proteins in same PDB: d4hn0a2, d4hn0b2, d4hn0c2, d4hn0d2
        automated match to d2c0za1
        complexed with cl, edo
      4. 2404552Domain d4hn0d1: 4hn0 D:1-196 [194293]
        Other proteins in same PDB: d4hn0a2, d4hn0b2, d4hn0c2, d4hn0d2
        automated match to d2c0za1
        complexed with cl, edo
    3. Domains for 4hn1:
      1. 2404541Domain d4hn1a1: 4hn1 A:1-196 [193360]
        Other proteins in same PDB: d4hn1a2, d4hn1b2, d4hn1c2, d4hn1d2
        automated match to d2c0za1
        complexed with edo, tdr, thm, tyd; mutant
      2. 2404542Domain d4hn1b1: 4hn1 B:1-196 [202451]
        Other proteins in same PDB: d4hn1a2, d4hn1b2, d4hn1c2, d4hn1d2
        automated match to d4hn1a_
        complexed with edo, tdr, thm, tyd; mutant
      3. 2404543Domain d4hn1c1: 4hn1 C:1-196 [202452]
        Other proteins in same PDB: d4hn1a2, d4hn1b2, d4hn1c2, d4hn1d2
        automated match to d4hn1a_
        complexed with edo, tdr, thm, tyd; mutant
      4. 2404544Domain d4hn1d1: 4hn1 D:1-196 [202453]
        Other proteins in same PDB: d4hn1a2, d4hn1b2, d4hn1c2, d4hn1d2
        automated match to d4hn1a_
        complexed with edo, tdr, thm, tyd; mutant
  22. 2404553Thale cress (Arabidopsis thaliana) [TaxId:3702] [226353] (2 PDB entries)
    1. Domains for 4e2q:
      1. 2404554Domain d4e2qa_: 4e2q A: [220193]
        automated match to d1sfna_
        complexed with mn
      2. 2404555Domain d4e2qb_: 4e2q B: [220194]
        automated match to d1sfna_
        complexed with mn
      3. 2404556Domain d4e2qc_: 4e2q C: [220195]
        automated match to d1sfna_
        complexed with mn
      4. 2404557Domain d4e2qd_: 4e2q D: [220196]
        automated match to d1sfna_
        complexed with mn
      5. 2404558Domain d4e2qe_: 4e2q E: [220197]
        automated match to d1sfna_
        complexed with mn
      6. 2404559Domain d4e2qf_: 4e2q F: [220198]
        automated match to d1sfna_
        complexed with mn
      7. 2404560Domain d4e2qg_: 4e2q G: [220199]
        automated match to d1sfna_
        complexed with mn
      8. 2404561Domain d4e2qh_: 4e2q H: [220200]
        automated match to d1sfna_
        complexed with mn
      9. 2404562Domain d4e2qi_: 4e2q I: [220201]
        automated match to d1sfna_
        complexed with mn
      10. 2404563Domain d4e2qj_: 4e2q J: [220202]
        automated match to d1sfna_
        complexed with mn
      11. 2404564Domain d4e2qk_: 4e2q K: [220203]
        automated match to d1sfna_
        complexed with mn
      12. 2404565Domain d4e2ql_: 4e2q L: [220204]
        automated match to d1sfna_
        complexed with mn
      13. 2404566Domain d4e2qm_: 4e2q M: [220205]
        automated match to d1sfna_
        complexed with mn
      14. 2404567Domain d4e2qn_: 4e2q N: [220206]
        automated match to d1sfna_
        complexed with mn
      15. 2404568Domain d4e2qo_: 4e2q O: [220207]
        automated match to d1sfna_
        complexed with mn
      16. 2404569Domain d4e2qp_: 4e2q P: [220208]
        automated match to d1sfna_
        complexed with mn
    2. Domains for 4e2s:
      1. 2404570Domain d4e2sa_: 4e2s A: [220209]
        automated match to d1sfna_
        complexed with mn, ugy
      2. 2404571Domain d4e2sb_: 4e2s B: [220210]
        automated match to d1sfna_
        complexed with mn, ugy
      3. 2404572Domain d4e2sc_: 4e2s C: [220211]
        automated match to d1sfna_
        complexed with mn, ugy
      4. 2404573Domain d4e2sd_: 4e2s D: [220212]
        automated match to d1sfna_
        complexed with mn, ugy
      5. 2404574Domain d4e2se_: 4e2s E: [220213]
        automated match to d1sfna_
        complexed with mn, ugy
      6. 2404575Domain d4e2sf_: 4e2s F: [220214]
        automated match to d1sfna_
        complexed with mn, ugy
      7. 2404576Domain d4e2sg_: 4e2s G: [220215]
        automated match to d1sfna_
        complexed with mn, ugy
      8. 2404577Domain d4e2sh_: 4e2s H: [220216]
        automated match to d1sfna_
        complexed with mn, ugy
      9. 2404578Domain d4e2si_: 4e2s I: [220217]
        automated match to d1sfna_
        complexed with mn, ugy
      10. 2404579Domain d4e2sj_: 4e2s J: [220218]
        automated match to d1sfna_
        complexed with mn, ugy
      11. 2404580Domain d4e2sk_: 4e2s K: [220219]
        automated match to d1sfna_
        complexed with mn, ugy
      12. 2404581Domain d4e2sl_: 4e2s L: [220220]
        automated match to d1sfna_
        complexed with mn, ugy
      13. 2404582Domain d4e2sm_: 4e2s M: [220221]
        automated match to d1sfna_
        complexed with mn, ugy
      14. 2404583Domain d4e2sn_: 4e2s N: [220222]
        automated match to d1sfna_
        complexed with mn, ugy
      15. 2404584Domain d4e2so_: 4e2s O: [220223]
        automated match to d1sfna_
        complexed with mn, ugy
      16. 2404585Domain d4e2sp_: 4e2s P: [220224]
        automated match to d1sfna_
        complexed with mn, ugy
  23. 2404586Thermoanaerobacterium thermosaccharolyticum [TaxId:1517] [238466] (4 PDB entries)
    1. Domains for 4o9e:
      1. 2404591Domain d4o9ea1: 4o9e A:1-136 [240673]
        Other proteins in same PDB: d4o9ea2, d4o9eb2
        automated match to d4o9eb_
        complexed with 4td, tdr, tyd
      2. 2404592Domain d4o9eb1: 4o9e B:1-136 [238467]
        Other proteins in same PDB: d4o9ea2, d4o9eb2
        automated match to d2pa7b_
        complexed with 4td, tdr, tyd
    2. Domains for 4o9g:
      1. 2404587Domain d4o9ga1: 4o9g A:1-136 [238468]
        Other proteins in same PDB: d4o9ga2, d4o9gb2
        automated match to d2paea1
        complexed with 4td, edo, t46; mutant
      2. 2404588Domain d4o9gb1: 4o9g B:1-136 [238469]
        Other proteins in same PDB: d4o9ga2, d4o9gb2
        automated match to d2paea1
        complexed with 4td, edo, t46; mutant
    3. Domains for 4zu5:
      1. 2404589Domain d4zu5a1: 4zu5 A:1-136 [313050]
        Other proteins in same PDB: d4zu5a2, d4zu5b2
        automated match to d2pa7b_
        complexed with pxn, thm
      2. 2404590Domain d4zu5b1: 4zu5 B:2-136 [313041]
        Other proteins in same PDB: d4zu5a2, d4zu5b2
        automated match to d2pa7b_
        complexed with pxn, thm
    4. Domains for 4zu7:
      1. 2404593Domain d4zu7a1: 4zu7 A:1-136 [275140]
        Other proteins in same PDB: d4zu7a2, d4zu7b2, d4zu7c2, d4zu7d2, d4zu7e2, d4zu7f2
        automated match to d4o9ga_
        complexed with pxn, tyd; mutant
      2. 2404594Domain d4zu7b1: 4zu7 B:1-136 [275139]
        Other proteins in same PDB: d4zu7a2, d4zu7b2, d4zu7c2, d4zu7d2, d4zu7e2, d4zu7f2
        automated match to d4o9ga_
        complexed with pxn, tyd; mutant
      3. 2404595Domain d4zu7c1: 4zu7 C:1-136 [275142]
        Other proteins in same PDB: d4zu7a2, d4zu7b2, d4zu7c2, d4zu7d2, d4zu7e2, d4zu7f2
        automated match to d4o9ga_
        complexed with pxn, tyd; mutant
      4. 2404596Domain d4zu7d1: 4zu7 D:1-136 [275141]
        Other proteins in same PDB: d4zu7a2, d4zu7b2, d4zu7c2, d4zu7d2, d4zu7e2, d4zu7f2
        automated match to d4o9ga_
        complexed with pxn, tyd; mutant
      5. 2404597Domain d4zu7e1: 4zu7 E:2-136 [275145]
        Other proteins in same PDB: d4zu7a2, d4zu7b2, d4zu7c2, d4zu7d2, d4zu7e2, d4zu7f2
        automated match to d4o9ga_
        complexed with pxn, tyd; mutant
      6. 2404598Domain d4zu7f1: 4zu7 F:1-136 [275146]
        Other proteins in same PDB: d4zu7a2, d4zu7b2, d4zu7c2, d4zu7d2, d4zu7e2, d4zu7f2
        automated match to d4o9ga_
        complexed with pxn, tyd; mutant
      7. 2404599Domain d4zu7g_: 4zu7 G: [275144]
        Other proteins in same PDB: d4zu7a2, d4zu7b2, d4zu7c2, d4zu7d2, d4zu7e2, d4zu7f2
        automated match to d4o9ga_
        complexed with pxn, tyd; mutant
      8. 2404600Domain d4zu7h_: 4zu7 H: [275143]
        Other proteins in same PDB: d4zu7a2, d4zu7b2, d4zu7c2, d4zu7d2, d4zu7e2, d4zu7f2
        automated match to d4o9ga_
        complexed with pxn, tyd; mutant
  24. 2404601Yersinia enterocolitica [TaxId:393305] [275567] (1 PDB entry)
  25. 3049971Elizabethkingia anophelis [TaxId:1338011] [350033] (1 PDB entry)
  26. 3050016Canavalia ensiformis [TaxId:3823] [350078] (1 PDB entry)

More info for Protein automated matches from b.82.1.0: automated matches

Timeline for Protein automated matches from b.82.1.0: automated matches: