SCOPe Funding Alert: SCOPe support from the NIH ended in April 2016. John-Marc Chandonia is the primary maintainer and has continued to develop SCOPe using vacation time. Three proposals to the NIH for continued funding have been unsuccessful. If our current NIH proposal is not funded, SCOPe will shut down permanently in Summer 2017 as Dr. Chandonia will need to seek a new position.

Lineage for Protein: automated matches

  1. Root: SCOPe 2.06
  2. 2017114Class b: All beta proteins [48724] (177 folds)
  3. 2070014Fold b.82: Double-stranded beta-helix [51181] (7 superfamilies)
    one turn of helix is made by two pairs of antiparallel strands linked with short turns
    has appearance of a sandwich of distinct architecture and jelly-roll topology
  4. 2070015Superfamily b.82.1: RmlC-like cupins [51182] (25 families) (S)
  5. 2070601Family b.82.1.0: automated matches [191354] (1 protein)
    not a true family
  6. 2070602Protein automated matches [190388] (21 species)
    not a true protein

Species:

  1. 2070603Acinetobacter sp. [TaxId:62977] [188944] (1 PDB entry)
  2. 2070605Bacillus anthracis [TaxId:198094] [226138] (1 PDB entry)
  3. 2070608Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] [187242] (1 PDB entry)
  4. 2070610Branchiostoma belcheri [TaxId:155462] [189354] (2 PDB entries)
    1. Domain for 3loi:
    2. Domains for 3lzz:
      1. 2070612Domain d3lzza_: 3lzz A: [180676]
        automated match to d1yuda1
        complexed with act, gdp
      2. 2070613Domain d3lzzb_: 3lzz B: [180677]
        automated match to d1yuda1
        complexed with act, gdp
  5. 2070614Clostridium difficile [TaxId:272563] [256193] (1 PDB entry)
  6. 2070617Desulfitobacterium hafniense [TaxId:272564] [187970] (1 PDB entry)
  7. 2070620Escherichia coli [TaxId:562] [225481] (1 PDB entry)
  8. 2070622Granulicella tundricola [TaxId:1198114] [256205] (1 PDB entry)
  9. 2070631Granulicella tundricola [TaxId:940615] [268964] (1 PDB entry)
  10. 2070652Leptotrichia buccalis [TaxId:523794] [256062] (1 PDB entry)
  11. 2070655Mung bean (Vigna radiata) [TaxId:157791] [225082] (1 PDB entry)
  12. 2070658Pinus koraiensis [TaxId:88728] [236190] (1 PDB entry)
  13. 2070661Pseudomonas fluorescens [TaxId:216595] [189073] (3 PDB entries)
    1. Domains for 3esg:
      1. 2070662Domain d3esga_: 3esg A: [175191]
        automated match to d1ylla1
        complexed with fmt, gol
      2. 2070663Domain d3esgb_: 3esg B: [175192]
        automated match to d1ylla1
        complexed with fmt, gol
    2. Domains for 5fcc:
      1. 2285516Domain d5fcca_: 5fcc A: [328817]
        automated match to d3esgb_
        complexed with cl, edo, na
      2. 2285592Domain d5fccb_: 5fcc B: [328893]
        automated match to d3esgb_
        complexed with cl, edo, na
    3. Domains for 5v00:
      1. 2288145Domain d5v00a_: 5v00 A: [331446]
        automated match to d3esgb_
        complexed with fmt, gol
      2. 2288170Domain d5v00b_: 5v00 B: [331471]
        automated match to d3esgb_
        complexed with fmt, gol
  14. 2070664Pseudomonas putida [TaxId:160488] [196877] (3 PDB entries)
    1. Domains for 3zds:
      1. 2070665Domain d3zdsa_: 3zds A: [218259]
        automated match to d4aq6a_
        complexed with fe, hmq, hq9, m8o, omd, oxy, po4
      2. 2070666Domain d3zdsb_: 3zds B: [218260]
        automated match to d4aq6a_
        complexed with fe, hmq, hq9, m8o, omd, oxy, po4
      3. 2070667Domain d3zdsc_: 3zds C: [218261]
        automated match to d4aq6a_
        complexed with fe, hmq, hq9, m8o, omd, oxy, po4
      4. 2070668Domain d3zdsd_: 3zds D: [218262]
        automated match to d4aq6a_
        complexed with fe, hmq, hq9, m8o, omd, oxy, po4
      5. 2070669Domain d3zdse_: 3zds E: [218263]
        automated match to d4aq6a_
        complexed with fe, hmq, hq9, m8o, omd, oxy, po4
      6. 2070670Domain d3zdsf_: 3zds F: [218264]
        automated match to d4aq6a_
        complexed with fe, hmq, hq9, m8o, omd, oxy, po4
      7. 2070671Domain d3zdsg_: 3zds G: [218265]
        automated match to d4aq6a_
        complexed with fe, hmq, hq9, m8o, omd, oxy, po4
      8. 2070672Domain d3zdsh_: 3zds H: [218266]
        automated match to d4aq6a_
        complexed with fe, hmq, hq9, m8o, omd, oxy, po4
      9. 2070673Domain d3zdsi_: 3zds I: [218267]
        automated match to d4aq6a_
        complexed with fe, hmq, hq9, m8o, omd, oxy, po4
      10. 2070674Domain d3zdsj_: 3zds J: [218268]
        automated match to d4aq6a_
        complexed with fe, hmq, hq9, m8o, omd, oxy, po4
      11. 2070675Domain d3zdsk_: 3zds K: [218269]
        automated match to d4aq6a_
        complexed with fe, hmq, hq9, m8o, omd, oxy, po4
      12. 2070676Domain d3zdsl_: 3zds L: [218270]
        automated match to d4aq6a_
        complexed with fe, hmq, hq9, m8o, omd, oxy, po4
    2. Domains for 4aq2:
      1. 2070689Domain d4aq2a_: 4aq2 A: [219098]
        automated match to d4aq6a_
        complexed with b3p, fe
      2. 2070690Domain d4aq2b_: 4aq2 B: [219099]
        automated match to d4aq6a_
        complexed with b3p, fe
      3. 2070691Domain d4aq2c_: 4aq2 C: [219100]
        automated match to d4aq6a_
        complexed with b3p, fe
      4. 2070692Domain d4aq2d_: 4aq2 D: [219101]
        automated match to d4aq6a_
        complexed with b3p, fe
      5. 2070693Domain d4aq2e_: 4aq2 E: [219102]
        automated match to d4aq6a_
        complexed with b3p, fe
      6. 2070694Domain d4aq2f_: 4aq2 F: [219103]
        automated match to d4aq6a_
        complexed with b3p, fe
      7. 2070695Domain d4aq2g_: 4aq2 G: [219104]
        automated match to d4aq6a_
        complexed with b3p, fe
      8. 2070696Domain d4aq2h_: 4aq2 H: [219105]
        automated match to d4aq6a_
        complexed with b3p, fe
      9. 2070697Domain d4aq2i_: 4aq2 I: [219106]
        automated match to d4aq6a_
        complexed with b3p, fe
      10. 2070698Domain d4aq2j_: 4aq2 J: [219107]
        automated match to d4aq6a_
        complexed with b3p, fe
      11. 2070699Domain d4aq2k_: 4aq2 K: [219108]
        automated match to d4aq6a_
        complexed with b3p, fe
      12. 2070700Domain d4aq2l_: 4aq2 L: [219109]
        automated match to d4aq6a_
        complexed with b3p, fe
    3. Domains for 4aq6:
      1. 2070677Domain d4aq6a_: 4aq6 A: [196878]
        automated match to d1eyba_
        complexed with b3p, fe, omd
      2. 2070678Domain d4aq6b_: 4aq6 B: [196879]
        automated match to d1eyba_
        complexed with b3p, fe, omd
      3. 2070679Domain d4aq6c_: 4aq6 C: [201500]
        automated match to d4aq6a_
        complexed with b3p, fe, omd
      4. 2070680Domain d4aq6d_: 4aq6 D: [201501]
        automated match to d4aq6a_
        complexed with b3p, fe, omd
      5. 2070681Domain d4aq6e_: 4aq6 E: [201502]
        automated match to d4aq6a_
        complexed with b3p, fe, omd
      6. 2070682Domain d4aq6f_: 4aq6 F: [201503]
        automated match to d4aq6a_
        complexed with b3p, fe, omd
      7. 2070683Domain d4aq6g_: 4aq6 G: [201504]
        automated match to d4aq6a_
        complexed with b3p, fe, omd
      8. 2070684Domain d4aq6h_: 4aq6 H: [201505]
        automated match to d4aq6a_
        complexed with b3p, fe, omd
      9. 2070685Domain d4aq6i_: 4aq6 I: [201506]
        automated match to d4aq6a_
        complexed with b3p, fe, omd
      10. 2070686Domain d4aq6j_: 4aq6 J: [201507]
        automated match to d4aq6a_
        complexed with b3p, fe, omd
      11. 2070687Domain d4aq6k_: 4aq6 K: [201508]
        automated match to d4aq6a_
        complexed with b3p, fe, omd
      12. 2070688Domain d4aq6l_: 4aq6 L: [201509]
        automated match to d4aq6a_
        complexed with b3p, fe, omd
  15. 2070701Pumpkin (Cucurbita maxima) [TaxId:3661] [225177] (2 PDB entries)
    1. Domains for 2e9q:
      1. 2070702Domain d2e9qa1: 2e9q A:26-254 [204082]
        automated match to d1fxza1
        complexed with cl, po4
      2. 2070703Domain d2e9qa2: 2e9q A:281-453 [204083]
        automated match to d1fxza2
        complexed with cl, po4
    2. Domains for 2evx:
      1. 2070704Domain d2evxa1: 2evx A:26-253 [204143]
        automated match to d1fxza1
        complexed with mg
      2. 2070705Domain d2evxa2: 2evx A:281-453 [204144]
        automated match to d1fxza2
        complexed with mg
  16. 2070706Soybean (Glycine max) [TaxId:3847] [225175] (2 PDB entries)
    1. Domains for 2d5f:
      1. 2070707Domain d2d5fa1: 2d5f A:7-249 [203922]
        automated match to d1fxza1
        complexed with co3, mg
      2. 2070708Domain d2d5fa2: 2d5f A:326-493 [203923]
        automated match to d1fxza2
        complexed with co3, mg
      3. 2070709Domain d2d5fb1: 2d5f B:7-249 [203924]
        automated match to d1fxza1
        complexed with co3, mg
      4. 2070710Domain d2d5fb2: 2d5f B:326-493 [203925]
        automated match to d1fxza2
        complexed with co3, mg
    2. Domains for 2d5h:
      1. 2070711Domain d2d5ha1: 2d5h A:6-248 [203926]
        automated match to d1fxza1
        complexed with co3, mg
      2. 2070712Domain d2d5ha2: 2d5h A:326-493 [203927]
        automated match to d1fxza2
        complexed with co3, mg
      3. 2070713Domain d2d5hb1: 2d5h B:6-248 [203928]
        automated match to d1fxza1
        complexed with co3, mg
      4. 2070714Domain d2d5hb2: 2d5h B:326-493 [203929]
        automated match to d1fxza2
        complexed with co3, mg
      5. 2070715Domain d2d5hc1: 2d5h C:6-247 [203930]
        automated match to d1fxza1
        complexed with co3, mg
      6. 2070716Domain d2d5hc2: 2d5h C:326-493 [203931]
        automated match to d1fxza2
        complexed with co3, mg
      7. 2070717Domain d2d5hd1: 2d5h D:6-247 [203932]
        automated match to d1fxza1
        complexed with co3, mg
      8. 2070718Domain d2d5hd2: 2d5h D:326-493 [203933]
        automated match to d1fxza2
        complexed with co3, mg
      9. 2070719Domain d2d5he1: 2d5h E:1-248 [203934]
        automated match to d1fxza1
        complexed with co3, mg
      10. 2070720Domain d2d5he2: 2d5h E:326-493 [203935]
        automated match to d1fxza2
        complexed with co3, mg
      11. 2070721Domain d2d5hf1: 2d5h F:6-248 [203936]
        automated match to d1fxza1
        complexed with co3, mg
      12. 2070722Domain d2d5hf2: 2d5h F:326-493 [203937]
        automated match to d1fxza2
        complexed with co3, mg
  17. 2070723Streptomyces bikiniensis [TaxId:1896] [193359] (3 PDB entries)
    1. Domains for 4hmz:
      1. 2070728Domain d4hmza1: 4hmz A:1-196 [202447]
        Other proteins in same PDB: d4hmza2, d4hmzb2, d4hmzc2, d4hmzd2
        automated match to d4hmzb_
        complexed with 18t, edo
      2. 2070729Domain d4hmzb1: 4hmz B:1-196 [193361]
        Other proteins in same PDB: d4hmza2, d4hmzb2, d4hmzc2, d4hmzd2
        automated match to d2c0za1
        complexed with 18t, edo
      3. 2070730Domain d4hmzc1: 4hmz C:1-196 [202448]
        Other proteins in same PDB: d4hmza2, d4hmzb2, d4hmzc2, d4hmzd2
        automated match to d4hmzb_
        complexed with 18t, edo
      4. 2070731Domain d4hmzd1: 4hmz D:1-196 [202449]
        Other proteins in same PDB: d4hmza2, d4hmzb2, d4hmzc2, d4hmzd2
        automated match to d4hmzb_
        complexed with 18t, edo
    2. Domains for 4hn0:
      1. 2070732Domain d4hn0a1: 4hn0 A:1-196 [194294]
        Other proteins in same PDB: d4hn0a2, d4hn0b2, d4hn0c2, d4hn0d2
        automated match to d2c0za1
        complexed with cl, edo
      2. 2070733Domain d4hn0b1: 4hn0 B:1-196 [202450]
        Other proteins in same PDB: d4hn0a2, d4hn0b2, d4hn0c2, d4hn0d2
        automated match to d4hn0c_
        complexed with cl, edo
      3. 2070734Domain d4hn0c1: 4hn0 C:1-196 [194292]
        Other proteins in same PDB: d4hn0a2, d4hn0b2, d4hn0c2, d4hn0d2
        automated match to d2c0za1
        complexed with cl, edo
      4. 2070735Domain d4hn0d1: 4hn0 D:1-196 [194293]
        Other proteins in same PDB: d4hn0a2, d4hn0b2, d4hn0c2, d4hn0d2
        automated match to d2c0za1
        complexed with cl, edo
    3. Domains for 4hn1:
      1. 2070724Domain d4hn1a1: 4hn1 A:1-196 [193360]
        Other proteins in same PDB: d4hn1a2, d4hn1b2, d4hn1c2, d4hn1d2
        automated match to d2c0za1
        complexed with edo, tdr, thm, tyd; mutant
      2. 2070725Domain d4hn1b1: 4hn1 B:1-196 [202451]
        Other proteins in same PDB: d4hn1a2, d4hn1b2, d4hn1c2, d4hn1d2
        automated match to d4hn1a_
        complexed with edo, tdr, thm, tyd; mutant
      3. 2070726Domain d4hn1c1: 4hn1 C:1-196 [202452]
        Other proteins in same PDB: d4hn1a2, d4hn1b2, d4hn1c2, d4hn1d2
        automated match to d4hn1a_
        complexed with edo, tdr, thm, tyd; mutant
      4. 2070727Domain d4hn1d1: 4hn1 D:1-196 [202453]
        Other proteins in same PDB: d4hn1a2, d4hn1b2, d4hn1c2, d4hn1d2
        automated match to d4hn1a_
        complexed with edo, tdr, thm, tyd; mutant
  18. 2070736Thale cress (Arabidopsis thaliana) [TaxId:3702] [226353] (2 PDB entries)
    1. Domains for 4e2q:
      1. 2070753Domain d4e2qa_: 4e2q A: [220193]
        automated match to d1sfna_
        complexed with mn
      2. 2070754Domain d4e2qb_: 4e2q B: [220194]
        automated match to d1sfna_
        complexed with mn
      3. 2070755Domain d4e2qc_: 4e2q C: [220195]
        automated match to d1sfna_
        complexed with mn
      4. 2070756Domain d4e2qd_: 4e2q D: [220196]
        automated match to d1sfna_
        complexed with mn
      5. 2070757Domain d4e2qe_: 4e2q E: [220197]
        automated match to d1sfna_
        complexed with mn
      6. 2070758Domain d4e2qf_: 4e2q F: [220198]
        automated match to d1sfna_
        complexed with mn
      7. 2070759Domain d4e2qg_: 4e2q G: [220199]
        automated match to d1sfna_
        complexed with mn
      8. 2070760Domain d4e2qh_: 4e2q H: [220200]
        automated match to d1sfna_
        complexed with mn
      9. 2070761Domain d4e2qi_: 4e2q I: [220201]
        automated match to d1sfna_
        complexed with mn
      10. 2070762Domain d4e2qj_: 4e2q J: [220202]
        automated match to d1sfna_
        complexed with mn
      11. 2070763Domain d4e2qk_: 4e2q K: [220203]
        automated match to d1sfna_
        complexed with mn
      12. 2070764Domain d4e2ql_: 4e2q L: [220204]
        automated match to d1sfna_
        complexed with mn
      13. 2070765Domain d4e2qm_: 4e2q M: [220205]
        automated match to d1sfna_
        complexed with mn
      14. 2070766Domain d4e2qn_: 4e2q N: [220206]
        automated match to d1sfna_
        complexed with mn
      15. 2070767Domain d4e2qo_: 4e2q O: [220207]
        automated match to d1sfna_
        complexed with mn
      16. 2070768Domain d4e2qp_: 4e2q P: [220208]
        automated match to d1sfna_
        complexed with mn
    2. Domains for 4e2s:
      1. 2070737Domain d4e2sa_: 4e2s A: [220209]
        automated match to d1sfna_
        complexed with mn, ugy
      2. 2070738Domain d4e2sb_: 4e2s B: [220210]
        automated match to d1sfna_
        complexed with mn, ugy
      3. 2070739Domain d4e2sc_: 4e2s C: [220211]
        automated match to d1sfna_
        complexed with mn, ugy
      4. 2070740Domain d4e2sd_: 4e2s D: [220212]
        automated match to d1sfna_
        complexed with mn, ugy
      5. 2070741Domain d4e2se_: 4e2s E: [220213]
        automated match to d1sfna_
        complexed with mn, ugy
      6. 2070742Domain d4e2sf_: 4e2s F: [220214]
        automated match to d1sfna_
        complexed with mn, ugy
      7. 2070743Domain d4e2sg_: 4e2s G: [220215]
        automated match to d1sfna_
        complexed with mn, ugy
      8. 2070744Domain d4e2sh_: 4e2s H: [220216]
        automated match to d1sfna_
        complexed with mn, ugy
      9. 2070745Domain d4e2si_: 4e2s I: [220217]
        automated match to d1sfna_
        complexed with mn, ugy
      10. 2070746Domain d4e2sj_: 4e2s J: [220218]
        automated match to d1sfna_
        complexed with mn, ugy
      11. 2070747Domain d4e2sk_: 4e2s K: [220219]
        automated match to d1sfna_
        complexed with mn, ugy
      12. 2070748Domain d4e2sl_: 4e2s L: [220220]
        automated match to d1sfna_
        complexed with mn, ugy
      13. 2070749Domain d4e2sm_: 4e2s M: [220221]
        automated match to d1sfna_
        complexed with mn, ugy
      14. 2070750Domain d4e2sn_: 4e2s N: [220222]
        automated match to d1sfna_
        complexed with mn, ugy
      15. 2070751Domain d4e2so_: 4e2s O: [220223]
        automated match to d1sfna_
        complexed with mn, ugy
      16. 2070752Domain d4e2sp_: 4e2s P: [220224]
        automated match to d1sfna_
        complexed with mn, ugy
  19. 2070769Thermoanaerobacterium thermosaccharolyticum [TaxId:1517] [238466] (4 PDB entries)
    1. Domains for 4o9e:
      1. 2070772Domain d4o9ea1: 4o9e A:1-136 [240673]
        Other proteins in same PDB: d4o9ea2, d4o9eb2
        automated match to d4o9eb_
        complexed with 4td, tdr, tyd
      2. 2070773Domain d4o9eb1: 4o9e B:1-136 [238467]
        Other proteins in same PDB: d4o9ea2, d4o9eb2
        automated match to d2pa7b_
        complexed with 4td, tdr, tyd
    2. Domains for 4o9g:
      1. 2070770Domain d4o9ga1: 4o9g A:1-136 [238468]
        Other proteins in same PDB: d4o9ga2, d4o9gb2
        automated match to d2paea1
        complexed with 4td, edo, t46; mutant
      2. 2070771Domain d4o9gb1: 4o9g B:1-136 [238469]
        Other proteins in same PDB: d4o9ga2, d4o9gb2
        automated match to d2paea1
        complexed with 4td, edo, t46; mutant
    3. Domains for 4zu5:
      1. 2269736Domain d4zu5b1: 4zu5 B:2-136 [313041]
        Other proteins in same PDB: d4zu5a2, d4zu5b2
        automated match to d2pa7b_
        complexed with pxn, thm
      2. 2269745Domain d4zu5a1: 4zu5 A:1-136 [313050]
        Other proteins in same PDB: d4zu5a2, d4zu5b2
        automated match to d2pa7b_
        complexed with pxn, thm
    4. Domains for 4zu7:
      1. 2070774Domain d4zu7a1: 4zu7 A:1-136 [275140]
        Other proteins in same PDB: d4zu7a2, d4zu7b2, d4zu7c2, d4zu7d2, d4zu7e2, d4zu7f2
        automated match to d4o9ga_
        complexed with pxn, tyd; mutant
      2. 2070775Domain d4zu7b1: 4zu7 B:1-136 [275139]
        Other proteins in same PDB: d4zu7a2, d4zu7b2, d4zu7c2, d4zu7d2, d4zu7e2, d4zu7f2
        automated match to d4o9ga_
        complexed with pxn, tyd; mutant
      3. 2070776Domain d4zu7c1: 4zu7 C:1-136 [275142]
        Other proteins in same PDB: d4zu7a2, d4zu7b2, d4zu7c2, d4zu7d2, d4zu7e2, d4zu7f2
        automated match to d4o9ga_
        complexed with pxn, tyd; mutant
      4. 2070777Domain d4zu7d1: 4zu7 D:1-136 [275141]
        Other proteins in same PDB: d4zu7a2, d4zu7b2, d4zu7c2, d4zu7d2, d4zu7e2, d4zu7f2
        automated match to d4o9ga_
        complexed with pxn, tyd; mutant
      5. 2070778Domain d4zu7e1: 4zu7 E:2-136 [275145]
        Other proteins in same PDB: d4zu7a2, d4zu7b2, d4zu7c2, d4zu7d2, d4zu7e2, d4zu7f2
        automated match to d4o9ga_
        complexed with pxn, tyd; mutant
      6. 2070779Domain d4zu7f1: 4zu7 F:1-136 [275146]
        Other proteins in same PDB: d4zu7a2, d4zu7b2, d4zu7c2, d4zu7d2, d4zu7e2, d4zu7f2
        automated match to d4o9ga_
        complexed with pxn, tyd; mutant
      7. 2070780Domain d4zu7g_: 4zu7 G: [275144]
        Other proteins in same PDB: d4zu7a2, d4zu7b2, d4zu7c2, d4zu7d2, d4zu7e2, d4zu7f2
        automated match to d4o9ga_
        complexed with pxn, tyd; mutant
      8. 2070781Domain d4zu7h_: 4zu7 H: [275143]
        Other proteins in same PDB: d4zu7a2, d4zu7b2, d4zu7c2, d4zu7d2, d4zu7e2, d4zu7f2
        automated match to d4o9ga_
        complexed with pxn, tyd; mutant
  20. 2070782Yersinia enterocolitica [TaxId:393305] [275567] (1 PDB entry)
  21. 2286005Campylobacter jejuni [TaxId:197] [329306] (1 PDB entry)

More info for Protein automated matches from b.82.1.0: automated matches

Timeline for Protein automated matches from b.82.1.0: automated matches: