Lineage for Protein: automated matches

  1. Root: SCOPe 2.06
  2. 1976409Class a: All alpha proteins [46456] (289 folds)
  3. 1992366Fold a.29: Bromodomain-like [47363] (15 superfamilies)
    4 helices; bundle; minor mirror variant of up-and-down topology
  4. 1992367Superfamily a.29.2: Bromodomain [47370] (2 families) (S)
  5. 1992368Family a.29.2.1: Bromodomain [47371] (5 protein domains)
  6. 1992403Protein automated matches [190366] (2 species)
    not a true protein

Species:

  1. 1992404Human (Homo sapiens) [TaxId:9606] [187201] (61 PDB entries)
    1. Domain for 1b91:
    2. Domains for 3d7c:
      1. 1992425Domain d3d7ca2: 3d7c A:729-837 [157420]
        Other proteins in same PDB: d3d7ca3
        automated match to d1f68a_
      2. 1992426Domain d3d7cb_: 3d7c B: [157421]
        Other proteins in same PDB: d3d7ca3
        automated match to d1f68a_
    3. Domains for 3i3j:
      1. 1992434Domain d3i3ja_: 3i3j A: [178050]
        automated match to d1jspb_
        complexed with cl, peg, so4
      2. 1992435Domain d3i3jb_: 3i3j B: [178051]
        automated match to d1jspb_
        complexed with cl, peg, so4
      3. 1992436Domain d3i3jc_: 3i3j C: [178052]
        automated match to d1jspb_
        complexed with cl, peg, so4
      4. 1992437Domain d3i3jd_: 3i3j D: [178053]
        automated match to d1jspb_
        complexed with cl, peg, so4
      5. 1992438Domain d3i3je_: 3i3j E: [178054]
        automated match to d1jspb_
        complexed with cl, peg, so4
      6. 1992439Domain d3i3jf_: 3i3j F: [178055]
        automated match to d1jspb_
        complexed with cl, peg, so4
      7. 1992440Domain d3i3jg_: 3i3j G: [178056]
        automated match to d1jspb_
        complexed with cl, peg, so4
      8. 1992441Domain d3i3jh_: 3i3j H: [178057]
        automated match to d1jspb_
        complexed with cl, peg, so4
      9. 1992442Domain d3i3ji_: 3i3j I: [178058]
        automated match to d1jspb_
        complexed with cl, peg, so4
      10. 1992443Domain d3i3jj_: 3i3j J: [178059]
        automated match to d1jspb_
        complexed with cl, peg, so4
      11. 1992444Domain d3i3jk_: 3i3j K: [178060]
        automated match to d1jspb_
        complexed with cl, peg, so4
      12. 1992445Domain d3i3jl_: 3i3j L: [178061]
        automated match to d1jspb_
        complexed with cl, peg, so4
    4. Domains for 3p1c:
      1. 1992413Domain d3p1ca_: 3p1c A: [183445]
        automated match to d1jspb_
        complexed with aly, k, scn
      2. 1992414Domain d3p1cb_: 3p1c B: [183446]
        automated match to d1jspb_
        complexed with aly, k, scn
    5. Domains for 3p1d:
      1. 1992419Domain d3p1da_: 3p1d A: [183447]
        automated match to d1jspb_
        complexed with k, mb3, scn
      2. 1992420Domain d3p1db_: 3p1d B: [183448]
        automated match to d1jspb_
        complexed with k, mb3, scn
    6. Domains for 3p1e:
      1. 1992415Domain d3p1ea_: 3p1e A: [183449]
        automated match to d1jspb_
        complexed with dms, k, scn
      2. 1992416Domain d3p1eb_: 3p1e B: [183450]
        automated match to d1jspb_
        complexed with dms, k, scn
    7. Domains for 3p1f:
      1. 1992409Domain d3p1fa1: 3p1f A:1081-1197 [183451]
        Other proteins in same PDB: d3p1fa2
        automated match to d1jspb_
        complexed with 3pf, edo, k
      2. 1992410Domain d3p1fb_: 3p1f B: [183452]
        Other proteins in same PDB: d3p1fa2
        automated match to d1jspb_
        complexed with 3pf, edo, k
    8. Domains for 3svh:
      1. 1992417Domain d3svha_: 3svh A: [200702]
        automated match to d3p1fa_
        complexed with edo, krg
      2. 1992418Domain d3svhb_: 3svh B: [192084]
        automated match to d3p1fa_
        complexed with edo, krg
    9. Domain for 3uv5:
    10. Domains for 4a9k:
      1. 1992411Domain d4a9ka_: 4a9k A: [186740]
        automated match to d1jspb_
        complexed with edo, k, scn, tyl
      2. 1992412Domain d4a9kb_: 4a9k B: [186741]
        automated match to d1jspb_
        complexed with edo, k, scn, tyl
    11. Domains for 4nr4:
      1. 1992421Domain d4nr4a_: 4nr4 A: [229960]
        automated match to d3p1fa_
        complexed with 2lk, edo, mg
      2. 1992422Domain d4nr4b_: 4nr4 B: [229961]
        automated match to d3p1fa_
        complexed with 2lk, edo, mg
    12. Domain for 4nr5:
    13. Domain for 4nr6:
    14. Domain for 4nr7:
    15. Domains for 4nyv:
      1. 1992428Domain d4nyva_: 4nyv A: [236475]
        automated match to d3p1fa_
        complexed with 15e
      2. 1992429Domain d4nyvb_: 4nyv B: [236477]
        automated match to d3p1fa_
        complexed with 15e
      3. 1992430Domain d4nyvc_: 4nyv C: [236478]
        automated match to d3p1ea_
        complexed with 15e
      4. 1992431Domain d4nyvd_: 4nyv D: [236479]
        automated match to d3p1ea_
        complexed with 15e
    16. Domain for 4nyw:
    17. Domain for 4nyx:
    18. Domains for 4yk0:
      1. 2272837Domain d4yk0d_: 4yk0 D: [316138]
        automated match to d4nyva_
        complexed with 98, edo
      2. 2272853Domain d4yk0b_: 4yk0 B: [316154]
        automated match to d4nyva_
        complexed with 98, edo
      3. 2272861Domain d4yk0c_: 4yk0 C: [316162]
        automated match to d4nyva_
        complexed with 98, edo
      4. 2272889Domain d4yk0a_: 4yk0 A: [316190]
        automated match to d4nyva_
        complexed with 98, edo
    19. Domain for 5bt3:
    20. Domain for 5cgp:
    21. Domains for 5dbm:
      1. 2272774Domain d5dbmb_: 5dbm B: [316075]
        Other proteins in same PDB: d5dbmc2
        automated match to d4nyxa_
        complexed with 58n
      2. 2272780Domain d5dbma_: 5dbm A: [316081]
        Other proteins in same PDB: d5dbmc2
        automated match to d4nyxa_
        complexed with 58n
      3. 2273256Domain d5dbmc1: 5dbm C:1082-1197 [316557]
        Other proteins in same PDB: d5dbmc2
        automated match to d4nyxa_
        complexed with 58n
    22. Domains for 5eic:
      1. 2282955Domain d5eicb1: 5eic B:1081-1196 [326256]
        Other proteins in same PDB: d5eicb2
        automated match to d4nyva_
        complexed with 5j5, edo
      2. 2283034Domain d5eica_: 5eic A: [326335]
        Other proteins in same PDB: d5eicb2
        automated match to d4nyva_
        complexed with 5j5, edo
    23. Domain for 5eng:
    24. Domain for 5ep7:
    25. Domains for 5fdz:
      1. 1992464Domain d5fdza_: 5fdz A: [280409]
        automated match to d1wuma_
        complexed with 5x0, edo
      2. 1992465Domain d5fdzb_: 5fdz B: [280408]
        automated match to d1wuma_
        complexed with 5x0, edo
    26. Domains for 5fe0:
      1. 1992460Domain d5fe0a_: 5fe0 A: [280414]
        automated match to d1wuma_
        complexed with aly
      2. 1992461Domain d5fe0b_: 5fe0 B: [280417]
        automated match to d1wuma_
        complexed with aly
    27. Domains for 5fe1:
      1. 1992456Domain d5fe1a_: 5fe1 A: [280418]
        automated match to d1wuma_
        complexed with 12q, edo
      2. 1992457Domain d5fe1b_: 5fe1 B: [280421]
        automated match to d1wuma_
        complexed with 12q, edo
    28. Domains for 5fe2:
      1. 1992458Domain d5fe2a_: 5fe2 A: [280425]
        automated match to d1wuma_
        complexed with 5wv, edo
      2. 1992459Domain d5fe2b_: 5fe2 B: [280419]
        automated match to d1wuma_
        complexed with 5wv, edo
    29. Domains for 5fe3:
      1. 1992450Domain d5fe3a_: 5fe3 A: [280420]
        automated match to d1wuma_
        complexed with 5wx, edo
      2. 1992451Domain d5fe3b_: 5fe3 B: [280426]
        automated match to d1wuma_
        complexed with 5wx, edo
    30. Domains for 5fe4:
      1. 1992454Domain d5fe4a_: 5fe4 A: [280413]
        automated match to d1wuma_
        complexed with 5wy, edo
      2. 1992455Domain d5fe4b_: 5fe4 B: [280410]
        automated match to d1wuma_
        complexed with 5wy, edo
    31. Domains for 5fe5:
      1. 1992452Domain d5fe5a_: 5fe5 A: [280411]
        automated match to d1wuma_
        complexed with 2qc, dms, edo
      2. 1992453Domain d5fe5b_: 5fe5 B: [280412]
        automated match to d1wuma_
        complexed with 2qc, dms, edo
    32. Domains for 5fe6:
      1. 1992432Domain d5fe6a_: 5fe6 A: [280432]
        automated match to d1wuma_
        complexed with 5wz, dms, edo
      2. 1992433Domain d5fe6b_: 5fe6 B: [280431]
        automated match to d1wuma_
        complexed with 5wz, dms, edo
    33. Domains for 5fe7:
      1. 1992446Domain d5fe7a_: 5fe7 A: [280415]
        automated match to d1wuma_
        complexed with 5wu, dms, edo
      2. 1992447Domain d5fe7b_: 5fe7 B: [280416]
        automated match to d1wuma_
        complexed with 5wu, dms, edo
    34. Domains for 5fe8:
      1. 1992448Domain d5fe8a_: 5fe8 A: [280424]
        automated match to d1wuma_
        complexed with 5wt, dms, edo
      2. 1992449Domain d5fe8b_: 5fe8 B: [280422]
        automated match to d1wuma_
        complexed with 5wt, dms, edo
    35. Domains for 5fe9:
      1. 1992462Domain d5fe9a_: 5fe9 A: [280423]
        automated match to d1wuma_
        complexed with 5ws, edo
      2. 1992463Domain d5fe9b_: 5fe9 B: [280430]
        automated match to d1wuma_
        complexed with 5ws, edo
    36. Domain for 5h85:
    37. Domain for 5i83:
    38. Domains for 5i86:
      1. 2272824Domain d5i86a_: 5i86 A: [316125]
        automated match to d4nyxa_
        complexed with 69a, edo, scn
      2. 2272871Domain d5i86b_: 5i86 B: [316172]
        automated match to d4nyxa_
        complexed with 69a, edo, scn
    39. Domain for 5i89:
    40. Domain for 5j0d:
    41. Domains for 5ktu:
      1. 2281375Domain d5ktub_: 5ktu B: [324676]
        automated match to d4nyxa_
        complexed with 6xb, dms
      2. 2281458Domain d5ktua_: 5ktu A: [324759]
        automated match to d4nyxa_
        complexed with 6xb, dms
    42. Domains for 5ktw:
      1. 2281412Domain d5ktwa1: 5ktw A:1085-1196 [324713]
        Other proteins in same PDB: d5ktwa2, d5ktwb2, d5ktwc2
        automated match to d4nyxa_
        complexed with 6xg, edo
      2. 2281414Domain d5ktwc1: 5ktw C:1085-1196 [324715]
        Other proteins in same PDB: d5ktwa2, d5ktwb2, d5ktwc2
        automated match to d4nyxa_
        complexed with 6xg, edo
      3. 2281520Domain d5ktwb1: 5ktw B:1085-1196 [324821]
        Other proteins in same PDB: d5ktwa2, d5ktwb2, d5ktwc2
        automated match to d4nyxa_
        complexed with 6xg, edo
    43. Domain for 5ktx:
    44. Domain for 5lpj:
    45. Domains for 5lpk:
      1. 2294556Domain d5lpka_: 5lpk A: [337857]
        automated match to d4nyxa_
        complexed with edo, pg4, so4, xdm
      2. 2294560Domain d5lpkc_: 5lpk C: [337861]
        automated match to d4nyxa_
        complexed with edo, pg4, so4, xdm
      3. 2294583Domain d5lpkd_: 5lpk D: [337884]
        automated match to d4nyxa_
        complexed with edo, pg4, so4, xdm
      4. 2294598Domain d5lpkf_: 5lpk F: [337899]
        automated match to d4nyxa_
        complexed with edo, pg4, so4, xdm
      5. 2294601Domain d5lpke_: 5lpk E: [337902]
        automated match to d4nyxa_
        complexed with edo, pg4, so4, xdm
      6. 2294787Domain d5lpkg_: 5lpk G: [338088]
        automated match to d4nyxa_
        complexed with edo, pg4, so4, xdm
      7. 2294814Domain d5lpkb_: 5lpk B: [338115]
        automated match to d4nyxa_
        complexed with edo, pg4, so4, xdm
    46. Domain for 5lpl:
    47. Domains for 5lpm:
      1. 2294561Domain d5lpmb1: 5lpm B:1048-1161 [337862]
        Other proteins in same PDB: d5lpma2, d5lpmb2
        automated match to d3i3je_
        complexed with 71y, act
      2. 2294590Domain d5lpma1: 5lpm A:1048-1161 [337891]
        Other proteins in same PDB: d5lpma2, d5lpmb2
        automated match to d3i3je_
        complexed with 71y, act
    48. Domains for 5lvq:
      1. 2281231Domain d5lvqa_: 5lvq A: [324532]
        automated match to d1b91a_
        complexed with 2lx, dms, edo
      2. 2281247Domain d5lvqb_: 5lvq B: [324548]
        automated match to d1b91a_
        complexed with 2lx, dms, edo
    49. Domains for 5lvr:
      1. 2281232Domain d5lvrb_: 5lvr B: [324533]
        automated match to d1b91a_
        complexed with 78y, dms, edo
      2. 2281275Domain d5lvra_: 5lvr A: [324576]
        automated match to d1b91a_
        complexed with 78y, dms, edo
    50. Domains for 5mkx:
      1. 2299841Domain d5mkxb_: 5mkx B: [343142]
        automated match to d1b91a_
        complexed with 82i, bu1, epe, so4
      2. 2299862Domain d5mkxa_: 5mkx A: [343163]
        automated match to d1b91a_
        complexed with 82i, bu1, epe, so4
    51. Domains for 5mlj:
      1. 2299830Domain d5mljb_: 5mlj B: [343131]
        automated match to d1b91a_
        complexed with 9st, edo
      2. 2299880Domain d5mlja_: 5mlj A: [343181]
        automated match to d1b91a_
        complexed with 9st, edo
    52. Domains for 5mme:
      1. 2299825Domain d5mmea1: 5mme A:1081-1197 [343126]
        Other proteins in same PDB: d5mmea2, d5mmeb2
        automated match to d4nyva_
        complexed with 8q6
      2. 2299893Domain d5mmeb1: 5mme B:1081-1197 [343194]
        Other proteins in same PDB: d5mmea2, d5mmeb2
        automated match to d4nyva_
        complexed with 8q6
    53. Domain for 5mmg:
    54. Domain for 5mpz:
    55. Domains for 5mqe:
      1. 2289920Domain d5mqea_: 5mqe A: [333221]
        automated match to d4nyva_
        complexed with pku
      2. 2289936Domain d5mqeb_: 5mqe B: [333237]
        automated match to d4nyva_
        complexed with pku
    56. Domains for 5mqg:
      1. 2289919Domain d5mqgb_: 5mqg B: [333220]
        automated match to d4nyva_
        complexed with f31
      2. 2289930Domain d5mqga_: 5mqg A: [333231]
        automated match to d4nyva_
        complexed with f31
    57. Domains for 5mqk:
      1. 2289922Domain d5mqka_: 5mqk A: [333223]
        automated match to d4nyva_
        complexed with qpr
      2. 2290016Domain d5mqkb_: 5mqk B: [333317]
        automated match to d4nyva_
        complexed with qpr
    58. Domain for 5nrw:
    59. Domain for 5nu3:
    60. Domains for 5nu5:
      1. 2294578Domain d5nu5b1: 5nu5 B:1048-1161 [337879]
        Other proteins in same PDB: d5nu5a2, d5nu5b2
        automated match to d3i3je_
        complexed with 99e, edo
      2. 2294593Domain d5nu5a1: 5nu5 A:1048-1161 [337894]
        Other proteins in same PDB: d5nu5a2, d5nu5b2
        automated match to d3i3je_
        complexed with 99e, edo
    61. Domain for 5tb6:
  2. 2299819Mus musculus [TaxId:10090] [343120] (1 PDB entry)

More info for Protein automated matches from a.29.2.1: Bromodomain

Timeline for Protein automated matches from a.29.2.1: Bromodomain: