SCOPe Funding Alert: SCOPe support from the NIH ended in April 2016. John-Marc Chandonia is the primary maintainer and has continued to develop SCOPe using vacation time. Three proposals to the NIH for continued funding have been unsuccessful. If our current NIH proposal is not funded, SCOPe will shut down permanently in Summer 2017 as Dr. Chandonia will need to seek a new position.

Lineage for Protein: automated matches

  1. Root: SCOPe 2.06
  2. 1976409Class a: All alpha proteins [46456] (289 folds)
  3. 1987359Fold a.24: Four-helical up-and-down bundle [47161] (28 superfamilies)
    core: 4 helices; bundle, closed or partly opened, left-handed twist; up-and-down
  4. 1987402Superfamily a.24.3: Cytochromes [47175] (3 families) (S)
    Heme-containing proteins
  5. 1987554Family a.24.3.2: Cytochrome c'-like [47179] (3 protein domains)
    automatically mapped to Pfam PF01322
  6. 1987599Protein automated matches [190363] (5 species)
    not a true protein

Species:

  1. 1987600Achromobacter xylosoxidans [TaxId:85698] [189489] (28 PDB entries)
    1. Domain for 2xl6:
    2. Domain for 2xl8:
    3. Domain for 2xld:
    4. Domain for 2xle:
    5. Domain for 2xlh:
    6. Domain for 2xlm:
    7. Domain for 2xlo:
    8. Domain for 2xlv:
    9. Domain for 2xlw:
    10. Domain for 2xm0:
    11. Domain for 2xm4:
    12. Domain for 2ykz:
    13. Domain for 2yl0:
    14. Domain for 2yl1:
    15. Domain for 2yl3:
    16. Domain for 2yl7:
    17. Domain for 2yld:
    18. Domain for 2ylg:
    19. Domain for 2yli:
    20. Domain for 3zqv:
    21. Domain for 3zqy:
    22. Domain for 3ztm:
    23. Domain for 3ztz:
    24. Domain for 3zwi:
    25. Domain for 4d4n:
    26. Domain for 4d4x:
    27. Domain for 5agf:
    28. Domain for 5jli:
  2. 1987628Rhodocyclus gelatinosus [TaxId:28068] [187197] (1 PDB entry)
  3. 1987631Rubrivivax gelatinosus [TaxId:28068] [187196] (1 PDB entry)
  4. 1987634Thermochromatium tepidum [TaxId:1050] [194692] (1 PDB entry)
  5. 2287374Alcaligenes xylosoxydans [TaxId:85698] [330675] (7 PDB entries)
    1. Domain for 5jp7:
    2. Domain for 5jra:
    3. Domain for 5js5:
    4. Domain for 5jsl:
    5. Domain for 5jt4:
    6. Domain for 5jua:
    7. Domain for 5jve:

More info for Protein automated matches from a.24.3.2: Cytochrome c'-like

Timeline for Protein automated matches from a.24.3.2: Cytochrome c'-like: