Lineage for Protein: automated matches

  1. Root: SCOPe 2.06
  2. 2170735Class d: Alpha and beta proteins (a+b) [53931] (385 folds)
  3. 2192663Fold d.58: Ferredoxin-like [54861] (59 superfamilies)
    alpha+beta sandwich with antiparallel beta-sheet; (beta-alpha-beta)x2
  4. 2195050Superfamily d.58.7: RNA-binding domain, RBD [54928] (6 families) (S)
  5. 2195051Family d.58.7.1: Canonical RBD [54929] (68 proteins)
  6. 2195506Protein automated matches [190332] (5 species)
    not a true protein

Species:

  1. 2195507Fruit fly (Drosophila melanogaster) [TaxId:7227] [311207] (1 PDB entry)
  2. 2195509Human (Homo sapiens) [TaxId:9606] [187155] (30 PDB entries)
    1. Domains for 1nrc:
      1. 2195572Domain d1nrca_: 1nrc A: [302778]
        automated match to d1dz5a_
      2. 2195573Domain d1nrcb_: 1nrc B: [302779]
        automated match to d1dz5a_
    2. Domain for 1wtb:
    3. Domain for 1x0f:
    4. Domains for 2ek1:
      1. 2195525Domain d2ek1a1: 2ek1 A:875-949 [164107]
        Other proteins in same PDB: d2ek1a2, d2ek1b2, d2ek1c2, d2ek1d2, d2ek1e2, d2ek1f2, d2ek1g2, d2ek1h2
        automated match to d2cqpa1
      2. 2195526Domain d2ek1b1: 2ek1 B:875-949 [164108]
        Other proteins in same PDB: d2ek1a2, d2ek1b2, d2ek1c2, d2ek1d2, d2ek1e2, d2ek1f2, d2ek1g2, d2ek1h2
        automated match to d2cqpa1
      3. 2195527Domain d2ek1c1: 2ek1 C:875-949 [164109]
        Other proteins in same PDB: d2ek1a2, d2ek1b2, d2ek1c2, d2ek1d2, d2ek1e2, d2ek1f2, d2ek1g2, d2ek1h2
        automated match to d2cqpa1
      4. 2195528Domain d2ek1d1: 2ek1 D:874-949 [164110]
        Other proteins in same PDB: d2ek1a2, d2ek1b2, d2ek1c2, d2ek1d2, d2ek1e2, d2ek1f2, d2ek1g2, d2ek1h2
        automated match to d2cqpa1
      5. 2195529Domain d2ek1e1: 2ek1 E:875-949 [164111]
        Other proteins in same PDB: d2ek1a2, d2ek1b2, d2ek1c2, d2ek1d2, d2ek1e2, d2ek1f2, d2ek1g2, d2ek1h2
        automated match to d2cqpa1
      6. 2195530Domain d2ek1f1: 2ek1 F:875-949 [164112]
        Other proteins in same PDB: d2ek1a2, d2ek1b2, d2ek1c2, d2ek1d2, d2ek1e2, d2ek1f2, d2ek1g2, d2ek1h2
        automated match to d2cqpa1
      7. 2195531Domain d2ek1g1: 2ek1 G:876-949 [164113]
        Other proteins in same PDB: d2ek1a2, d2ek1b2, d2ek1c2, d2ek1d2, d2ek1e2, d2ek1f2, d2ek1g2, d2ek1h2
        automated match to d2cqpa1
      8. 2195532Domain d2ek1h1: 2ek1 H:875-949 [164114]
        Other proteins in same PDB: d2ek1a2, d2ek1b2, d2ek1c2, d2ek1d2, d2ek1e2, d2ek1f2, d2ek1g2, d2ek1h2
        automated match to d2cqpa1
    5. Domains for 2ek6:
      1. 2195552Domain d2ek6a1: 2ek6 A:13-87 [164121]
        Other proteins in same PDB: d2ek6a2, d2ek6b2, d2ek6c2, d2ek6d2
        automated match to d2cqpa1
      2. 2195553Domain d2ek6b1: 2ek6 B:13-87 [164122]
        Other proteins in same PDB: d2ek6a2, d2ek6b2, d2ek6c2, d2ek6d2
        automated match to d2cqpa1
      3. 2195554Domain d2ek6c1: 2ek6 C:13-87 [164123]
        Other proteins in same PDB: d2ek6a2, d2ek6b2, d2ek6c2, d2ek6d2
        automated match to d2cqpa1
      4. 2195555Domain d2ek6d1: 2ek6 D:13-87 [164124]
        Other proteins in same PDB: d2ek6a2, d2ek6b2, d2ek6c2, d2ek6d2
        automated match to d2cqpa1
    6. Domain for 2j0s:
    7. Domain for 2kxn:
    8. Domain for 2kyx:
    9. Domains for 2lyv:
      1. 2195584Domain d2lyva1: 2lyv A:2-98 [243047]
        Other proteins in same PDB: d2lyva3
        automated match to d1u1qa1
      2. 2195585Domain d2lyva2: 2lyv A:99-196 [243048]
        Other proteins in same PDB: d2lyva3
        automated match to d1u1qa2
    10. Domain for 2mhn:
    11. Domains for 2mju:
      1. 2195589Domain d2mjua1: 2mju A:325-444 [264407]
        automated match to d1qm9a1
      2. 2195590Domain d2mjua2: 2mju A:445-531 [264408]
        automated match to d2adca2
    12. Domains for 3h2v:
      1. 2195562Domain d3h2ve1: 3h2v E:59-130 [177160]
        Other proteins in same PDB: d3h2va_, d3h2vb_, d3h2vc_, d3h2vd_, d3h2ve2, d3h2vf2, d3h2vg2, d3h2vh2
        automated match to d1wi6a1
        protein/RNA complex
      2. 2195563Domain d3h2vf1: 3h2v F:59-130 [177161]
        Other proteins in same PDB: d3h2va_, d3h2vb_, d3h2vc_, d3h2vd_, d3h2ve2, d3h2vf2, d3h2vg2, d3h2vh2
        automated match to d1wi6a1
        protein/RNA complex
      3. 2195564Domain d3h2vg1: 3h2v G:59-130 [177162]
        Other proteins in same PDB: d3h2va_, d3h2vb_, d3h2vc_, d3h2vd_, d3h2ve2, d3h2vf2, d3h2vg2, d3h2vh2
        automated match to d1wi6a1
        protein/RNA complex
      4. 2195565Domain d3h2vh1: 3h2v H:59-130 [177163]
        Other proteins in same PDB: d3h2va_, d3h2vb_, d3h2vc_, d3h2vd_, d3h2ve2, d3h2vf2, d3h2vg2, d3h2vh2
        automated match to d1wi6a1
        protein/RNA complex
    13. Domains for 3k0j:
      1. 2195566Domain d3k0ja_: 3k0j A: [247088]
        automated match to d1dz5a_
        protein/RNA complex; complexed with mg, tpp
      2. 2195567Domain d3k0jb_: 3k0j B: [247089]
        automated match to d1dz5a_
        protein/RNA complex; complexed with mg, tpp
      3. 2195568Domain d3k0jc_: 3k0j C: [247090]
        automated match to d1dz5a_
        protein/RNA complex; complexed with mg, tpp
      4. 2195569Domain d3k0jd_: 3k0j D: [247091]
        automated match to d1dz5a_
        protein/RNA complex; complexed with mg, tpp
    14. Domains for 3lpy:
      1. 2195535Domain d3lpya1: 3lpy A:5-82 [180503]
        Other proteins in same PDB: d3lpya2, d3lpyb2
        automated match to d2cqba1
        complexed with epe, so4
      2. 2195536Domain d3lpyb1: 3lpy B:5-82 [180504]
        Other proteins in same PDB: d3lpya2, d3lpyb2
        automated match to d2cqba1
        complexed with epe, so4
    15. Domains for 3lqv:
      1. 2195558Domain d3lqva_: 3lqv A: [180519]
        automated match to d2f9da1
        complexed with ade
      2. 2195559Domain d3lqvb_: 3lqv B: [180520]
        automated match to d2f9da1
        complexed with ade
    16. Domains for 3mdf:
      1. 2195515Domain d3mdfa_: 3mdf A: [181019]
        automated match to d2cqba1
      2. 2195516Domain d3mdfb_: 3mdf B: [181020]
        automated match to d2cqba1
    17. Domains for 3s7r:
      1. 2195560Domain d3s7ra_: 3s7r A: [200592]
        automated match to d3s7rb_
        complexed with unl
      2. 2195561Domain d3s7rb_: 3s7r B: [196248]
        automated match to d1hd0a_
        complexed with unl
    18. Domain for 3ulh:
    19. Domains for 3zzy:
      1. 2195510Domain d3zzya_: 3zzy A: [218621]
        automated match to d1sjra_
        protein/RNA complex
      2. 2195511Domain d3zzyb_: 3zzy B: [218622]
        automated match to d1sjra_
        protein/RNA complex
    20. Domains for 3zzz:
      1. 2195513Domain d3zzza_: 3zzz A: [218623]
        automated match to d1sjra_
        protein/RNA complex; complexed with iod
      2. 2195514Domain d3zzzb_: 3zzz B: [218624]
        automated match to d1sjra_
        protein/RNA complex; complexed with iod
    21. Domains for 4cko:
      1. 2195517Domain d4ckoa2: 4cko A:337-444 [307128]
        Other proteins in same PDB: d4ckoa3, d4ckob4, d4ckoc4, d4ckod4, d4ckoe4, d4ckof4, d4ckog4, d4ckoh4
        automated match to d1qm9a1
        complexed with cl, zn
      2. 2195518Domain d4ckob3: 4cko B:337-444 [307130]
        Other proteins in same PDB: d4ckoa3, d4ckob4, d4ckoc4, d4ckod4, d4ckoe4, d4ckof4, d4ckog4, d4ckoh4
        automated match to d1qm9a1
        complexed with cl, zn
      3. 2195519Domain d4ckoc3: 4cko C:337-444 [307132]
        Other proteins in same PDB: d4ckoa3, d4ckob4, d4ckoc4, d4ckod4, d4ckoe4, d4ckof4, d4ckog4, d4ckoh4
        automated match to d1qm9a1
        complexed with cl, zn
      4. 2195520Domain d4ckod3: 4cko D:337-444 [307134]
        Other proteins in same PDB: d4ckoa3, d4ckob4, d4ckoc4, d4ckod4, d4ckoe4, d4ckof4, d4ckog4, d4ckoh4
        automated match to d1qm9a1
        complexed with cl, zn
      5. 2195521Domain d4ckoe3: 4cko E:337-444 [307136]
        Other proteins in same PDB: d4ckoa3, d4ckob4, d4ckoc4, d4ckod4, d4ckoe4, d4ckof4, d4ckog4, d4ckoh4
        automated match to d1qm9a1
        complexed with cl, zn
      6. 2195522Domain d4ckof3: 4cko F:337-444 [307138]
        Other proteins in same PDB: d4ckoa3, d4ckob4, d4ckoc4, d4ckod4, d4ckoe4, d4ckof4, d4ckog4, d4ckoh4
        automated match to d1qm9a1
        complexed with cl, zn
      7. 2195523Domain d4ckog3: 4cko G:337-444 [307140]
        Other proteins in same PDB: d4ckoa3, d4ckob4, d4ckoc4, d4ckod4, d4ckoe4, d4ckof4, d4ckog4, d4ckoh4
        automated match to d1qm9a1
        complexed with cl, zn
      8. 2195524Domain d4ckoh3: 4cko H:337-444 [307142]
        Other proteins in same PDB: d4ckoa3, d4ckob4, d4ckoc4, d4ckod4, d4ckoe4, d4ckof4, d4ckog4, d4ckoh4
        automated match to d1qm9a1
        complexed with cl, zn
    22. Domains for 4cq1:
      1. 2195537Domain d4cq1a1: 4cq1 A:337-444 [236982]
        Other proteins in same PDB: d4cq1a2, d4cq1b2, d4cq1c2, d4cq1d2, d4cq1e2, d4cq1f2, d4cq1g2, d4cq1h2
        automated match to d4ckob1
        complexed with cl, zn
      2. 2195538Domain d4cq1b1: 4cq1 B:336-444 [236983]
        Other proteins in same PDB: d4cq1a2, d4cq1b2, d4cq1c2, d4cq1d2, d4cq1e2, d4cq1f2, d4cq1g2, d4cq1h2
        automated match to d4ckob1
        complexed with cl, zn
      3. 2195539Domain d4cq1c1: 4cq1 C:337-444 [236985]
        Other proteins in same PDB: d4cq1a2, d4cq1b2, d4cq1c2, d4cq1d2, d4cq1e2, d4cq1f2, d4cq1g2, d4cq1h2
        automated match to d4ckob1
        complexed with cl, zn
      4. 2195540Domain d4cq1d1: 4cq1 D:337-444 [236988]
        Other proteins in same PDB: d4cq1a2, d4cq1b2, d4cq1c2, d4cq1d2, d4cq1e2, d4cq1f2, d4cq1g2, d4cq1h2
        automated match to d4ckob1
        complexed with cl, zn
      5. 2195541Domain d4cq1e1: 4cq1 E:337-444 [236984]
        Other proteins in same PDB: d4cq1a2, d4cq1b2, d4cq1c2, d4cq1d2, d4cq1e2, d4cq1f2, d4cq1g2, d4cq1h2
        automated match to d4ckob1
        complexed with cl, zn
      6. 2195542Domain d4cq1f1: 4cq1 F:337-444 [236986]
        Other proteins in same PDB: d4cq1a2, d4cq1b2, d4cq1c2, d4cq1d2, d4cq1e2, d4cq1f2, d4cq1g2, d4cq1h2
        automated match to d4ckob1
        complexed with cl, zn
      7. 2195543Domain d4cq1g1: 4cq1 G:337-444 [236987]
        Other proteins in same PDB: d4cq1a2, d4cq1b2, d4cq1c2, d4cq1d2, d4cq1e2, d4cq1f2, d4cq1g2, d4cq1h2
        automated match to d4ckob1
        complexed with cl, zn
      8. 2195544Domain d4cq1h1: 4cq1 H:337-444 [236989]
        Other proteins in same PDB: d4cq1a2, d4cq1b2, d4cq1c2, d4cq1d2, d4cq1e2, d4cq1f2, d4cq1g2, d4cq1h2
        automated match to d4ckob1
        complexed with cl, zn
    23. Domain for 4iuf:
    24. Domains for 4lir:
      1. 2195556Domain d4lira_: 4lir A: [253601]
        automated match to d1wwha1
      2. 2195557Domain d4lirb_: 4lir B: [253602]
        automated match to d1wwha1
    25. Domain for 4w90:
    26. Domain for 4yud:
    27. Domains for 4zka:
      1. 2195546Domain d4zkaa_: 4zka A: [319169]
        automated match to d2erra1
        complexed with mes, pg4, so4
      2. 2195547Domain d4zkab_: 4zka B: [319173]
        automated match to d2erra1
        complexed with mes, pg4, so4
      3. 2195548Domain d4zkac_: 4zka C: [319154]
        automated match to d2erra1
        complexed with mes, pg4, so4
      4. 2195549Domain d4zkad_: 4zka D: [319184]
        automated match to d2erra1
        complexed with mes, pg4, so4
      5. 2195550Domain d4zkae_: 4zka E: [319155]
        automated match to d2erra1
        complexed with mes, pg4, so4
      6. 2195551Domain d4zkaf_: 4zka F: [319190]
        automated match to d2erra1
        complexed with mes, pg4, so4
    28. Domain for 5gvq:
    29. Domains for 5im0:
      1. 2195533Domain d5im0a_: 5im0 A: [320430]
        Other proteins in same PDB: d5im0b2, d5im0b3
        automated match to d3s7ra_
      2. 2195534Domain d5im0b1: 5im0 B:77-156 [320575]
        Other proteins in same PDB: d5im0b2, d5im0b3
        automated match to d3s7ra_
    30. Domains for 5oo6:
      1. 2195574Domain d5oo6b_: 5oo6 B: [341619]
        automated match to d1h2ux_
        complexed with mgt
      2. 2195575Domain d5oo6e_: 5oo6 E: [341755]
        automated match to d1h2ux_
        complexed with mgt
      3. 2195576Domain d5oo6h_: 5oo6 H: [341632]
        automated match to d1h2ux_
        complexed with mgt
      4. 2195577Domain d5oo6k_: 5oo6 K: [341640]
        automated match to d1h2ux_
        complexed with mgt
      5. 2195578Domain d5oo6n_: 5oo6 N: [341625]
        automated match to d1h2ux_
        complexed with mgt
      6. 2195579Domain d5oo6q_: 5oo6 Q: [341648]
        automated match to d1h2ux_
        complexed with mgt
      7. 2195580Domain d5oo6t_: 5oo6 T: [341641]
        automated match to d1h2ux_
        complexed with mgt
      8. 2195581Domain d5oo6w_: 5oo6 W: [341634]
        automated match to d1h2ux_
        complexed with mgt
  3. 2195593Mouse (Mus musculus) [TaxId:10090] [188825] (3 PDB entries)
    1. Domain for 2rok:
    2. Domain for 3d2w:
    3. Domains for 3v4m:
      1. 2195595Domain d3v4ma1: 3v4m A:372-475 [201157]
        Other proteins in same PDB: d3v4ma2
        automated match to d3v4mb_
        complexed with cl, na
      2. 2195596Domain d3v4mb_: 3v4m B: [195127]
        Other proteins in same PDB: d3v4ma2
        automated match to d1o0pa_
        complexed with cl, na
  4. 2195598Nematode (Caenorhabditis elegans) [TaxId:6239] [258944] (3 PDB entries)
    1. Domain for 2mgz:
    2. Domain for 2ru3:
    3. Domain for 4ch0:
  5. 2195602Norway rat (Rattus norvegicus) [TaxId:10116] [272203] (1 PDB entry)

More info for Protein automated matches from d.58.7.1: Canonical RBD

Timeline for Protein automated matches from d.58.7.1: Canonical RBD: