Lineage for Protein: automated matches

  1. Root: SCOPe 2.05
  2. 1886641Class d: Alpha and beta proteins (a+b) [53931] (381 folds)
  3. 1906287Fold d.58: Ferredoxin-like [54861] (59 superfamilies)
    alpha+beta sandwich with antiparallel beta-sheet; (beta-alpha-beta)x2
  4. 1908438Superfamily d.58.7: RNA-binding domain, RBD [54928] (6 families) (S)
  5. 1908439Family d.58.7.1: Canonical RBD [54929] (68 proteins)
  6. 1908891Protein automated matches [190332] (4 species)
    not a true protein

Species:

  1. 1908892Human (Homo sapiens) [TaxId:9606] [187155] (24 PDB entries)
    1. Domain for 1wtb:
    2. Domain for 1x0f:
    3. Domains for 2ek1:
      1. 1908910Domain d2ek1a_: 2ek1 A: [164107]
        automated match to d2cqpa1
      2. 1908911Domain d2ek1b_: 2ek1 B: [164108]
        automated match to d2cqpa1
      3. 1908912Domain d2ek1c_: 2ek1 C: [164109]
        automated match to d2cqpa1
      4. 1908913Domain d2ek1d_: 2ek1 D: [164110]
        automated match to d2cqpa1
      5. 1908914Domain d2ek1e_: 2ek1 E: [164111]
        automated match to d2cqpa1
      6. 1908915Domain d2ek1f_: 2ek1 F: [164112]
        automated match to d2cqpa1
      7. 1908916Domain d2ek1g_: 2ek1 G: [164113]
        automated match to d2cqpa1
      8. 1908917Domain d2ek1h_: 2ek1 H: [164114]
        automated match to d2cqpa1
    4. Domains for 2ek6:
      1. 1908921Domain d2ek6a_: 2ek6 A: [164121]
        automated match to d2cqpa1
      2. 1908922Domain d2ek6b_: 2ek6 B: [164122]
        automated match to d2cqpa1
      3. 1908923Domain d2ek6c_: 2ek6 C: [164123]
        automated match to d2cqpa1
      4. 1908924Domain d2ek6d_: 2ek6 D: [164124]
        automated match to d2cqpa1
    5. Domain for 2j0s:
    6. Domain for 2kxn:
    7. Domain for 2kyx:
    8. Domains for 2lyv:
      1. 1908940Domain d2lyva1: 2lyv A:1-98 [243047]
        automated match to d1u1qa1
      2. 1908941Domain d2lyva2: 2lyv A:99-196 [243048]
        automated match to d1u1qa2
    9. Domain for 2mhn:
    10. Domains for 2mju:
      1. 1908945Domain d2mjua1: 2mju A:325-444 [264407]
        automated match to d1qm9a1
      2. 1908946Domain d2mjua2: 2mju A:445-531 [264408]
        automated match to d2adca2
    11. Domains for 3h2v:
      1. 1908930Domain d3h2ve_: 3h2v E: [177160]
        Other proteins in same PDB: d3h2va_, d3h2vb_, d3h2vc_, d3h2vd_
        automated match to d1wi6a1
        protein/RNA complex
      2. 1908931Domain d3h2vf_: 3h2v F: [177161]
        Other proteins in same PDB: d3h2va_, d3h2vb_, d3h2vc_, d3h2vd_
        automated match to d1wi6a1
        protein/RNA complex
      3. 1908932Domain d3h2vg_: 3h2v G: [177162]
        Other proteins in same PDB: d3h2va_, d3h2vb_, d3h2vc_, d3h2vd_
        automated match to d1wi6a1
        protein/RNA complex
      4. 1908933Domain d3h2vh_: 3h2v H: [177163]
        Other proteins in same PDB: d3h2va_, d3h2vb_, d3h2vc_, d3h2vd_
        automated match to d1wi6a1
        protein/RNA complex
    12. Domains for 3k0j:
      1. 1908934Domain d3k0ja_: 3k0j A: [247088]
        automated match to d1dz5a_
        protein/RNA complex; complexed with mg, tpp
      2. 1908935Domain d3k0jb_: 3k0j B: [247089]
        automated match to d1dz5a_
        protein/RNA complex; complexed with mg, tpp
      3. 1908936Domain d3k0jc_: 3k0j C: [247090]
        automated match to d1dz5a_
        protein/RNA complex; complexed with mg, tpp
      4. 1908937Domain d3k0jd_: 3k0j D: [247091]
        automated match to d1dz5a_
        protein/RNA complex; complexed with mg, tpp
    13. Domains for 3lpy:
      1. 1908918Domain d3lpya_: 3lpy A: [180503]
        automated match to d2cqba1
        complexed with epe, so4
      2. 1908919Domain d3lpyb_: 3lpy B: [180504]
        automated match to d2cqba1
        complexed with epe, so4
    14. Domains for 3lqv:
      1. 1908928Domain d3lqva_: 3lqv A: [180519]
        automated match to d2f9da1
        complexed with ade
      2. 1908929Domain d3lqvb_: 3lqv B: [180520]
        automated match to d2f9da1
        complexed with ade
    15. Domains for 3mdf:
      1. 1908906Domain d3mdfa_: 3mdf A: [181019]
        automated match to d2cqba1
      2. 1908907Domain d3mdfb_: 3mdf B: [181020]
        automated match to d2cqba1
    16. Domains for 3s7r:
      1. 1908908Domain d3s7ra_: 3s7r A: [200592]
        automated match to d3s7rb_
        complexed with unl
      2. 1908909Domain d3s7rb_: 3s7r B: [196248]
        automated match to d1hd0a_
        complexed with unl
    17. Domain for 3ulh:
    18. Domains for 3zzy:
      1. 1908893Domain d3zzya_: 3zzy A: [218621]
        automated match to d1sjra_
        protein/RNA complex
      2. 1908894Domain d3zzyb_: 3zzy B: [218622]
        automated match to d1sjra_
        protein/RNA complex
    19. Domains for 3zzz:
      1. 1908896Domain d3zzza_: 3zzz A: [218623]
        automated match to d1sjra_
        protein/RNA complex; complexed with iod
      2. 1908897Domain d3zzzb_: 3zzz B: [218624]
        automated match to d1sjra_
        protein/RNA complex; complexed with iod
    20. Domains for 4cq1:
      1. 1908898Domain d4cq1a1: 4cq1 A:337-444 [236982]
        Other proteins in same PDB: d4cq1a2, d4cq1b2, d4cq1c2, d4cq1d2, d4cq1e2, d4cq1f2, d4cq1g2, d4cq1h2
        automated match to d4ckob1
        complexed with cl, zn
      2. 1908899Domain d4cq1b1: 4cq1 B:336-444 [236983]
        Other proteins in same PDB: d4cq1a2, d4cq1b2, d4cq1c2, d4cq1d2, d4cq1e2, d4cq1f2, d4cq1g2, d4cq1h2
        automated match to d4ckob1
        complexed with cl, zn
      3. 1908900Domain d4cq1c1: 4cq1 C:337-444 [236985]
        Other proteins in same PDB: d4cq1a2, d4cq1b2, d4cq1c2, d4cq1d2, d4cq1e2, d4cq1f2, d4cq1g2, d4cq1h2
        automated match to d4ckob1
        complexed with cl, zn
      4. 1908901Domain d4cq1d1: 4cq1 D:337-444 [236988]
        Other proteins in same PDB: d4cq1a2, d4cq1b2, d4cq1c2, d4cq1d2, d4cq1e2, d4cq1f2, d4cq1g2, d4cq1h2
        automated match to d4ckob1
        complexed with cl, zn
      5. 1908902Domain d4cq1e1: 4cq1 E:337-444 [236984]
        Other proteins in same PDB: d4cq1a2, d4cq1b2, d4cq1c2, d4cq1d2, d4cq1e2, d4cq1f2, d4cq1g2, d4cq1h2
        automated match to d4ckob1
        complexed with cl, zn
      6. 1908903Domain d4cq1f1: 4cq1 F:337-444 [236986]
        Other proteins in same PDB: d4cq1a2, d4cq1b2, d4cq1c2, d4cq1d2, d4cq1e2, d4cq1f2, d4cq1g2, d4cq1h2
        automated match to d4ckob1
        complexed with cl, zn
      7. 1908904Domain d4cq1g1: 4cq1 G:337-444 [236987]
        Other proteins in same PDB: d4cq1a2, d4cq1b2, d4cq1c2, d4cq1d2, d4cq1e2, d4cq1f2, d4cq1g2, d4cq1h2
        automated match to d4ckob1
        complexed with cl, zn
      8. 1908905Domain d4cq1h1: 4cq1 H:337-444 [236989]
        Other proteins in same PDB: d4cq1a2, d4cq1b2, d4cq1c2, d4cq1d2, d4cq1e2, d4cq1f2, d4cq1g2, d4cq1h2
        automated match to d4ckob1
        complexed with cl, zn
    21. Domain for 4iuf:
    22. Domains for 4lir:
      1. 1908925Domain d4lira_: 4lir A: [253601]
        automated match to d1wwha1
      2. 1908926Domain d4lirb_: 4lir B: [253602]
        automated match to d1wwha1
    23. Domain for 4w90:
    24. Domain for 4yud:
  2. 1908949Mouse (Mus musculus) [TaxId:10090] [188825] (3 PDB entries)
    1. Domain for 2rok:
    2. Domain for 3d2w:
      • 1908950Domain d3d2wa_: 3d2w A: [173655]
        automated match to d1wf0a_
        protein/DNA complex; protein/RNA complex; complexed with po4
    3. Domains for 3v4m:
      1. 1908951Domain d3v4ma_: 3v4m A: [201157]
        automated match to d3v4mb_
        complexed with cl, na
      2. 1908952Domain d3v4mb_: 3v4m B: [195127]
        automated match to d1o0pa_
        complexed with cl, na
  3. 1908954Nematode (Caenorhabditis elegans) [TaxId:6239] [258944] (3 PDB entries)
    1. Domain for 2mgz:
    2. Domain for 2ru3:
    3. Domain for 4ch0:
  4. 1908958Rattus norvegicus [TaxId:10116] [272203] (1 PDB entry)

More info for Protein automated matches from d.58.7.1: Canonical RBD

Timeline for Protein automated matches from d.58.7.1: Canonical RBD: