Lineage for Protein: automated matches

  1. Root: SCOPe 2.05
  2. 1886641Class d: Alpha and beta proteins (a+b) [53931] (381 folds)
  3. 1940569Fold d.169: C-type lectin-like [56435] (1 superfamily)
    unusual fold
  4. 1940570Superfamily d.169.1: C-type lectin-like [56436] (9 families) (S)
  5. 1940571Family d.169.1.1: C-type lectin domain [56437] (29 proteins)
    Pfam PF00059
  6. 1941004Protein automated matches [190329] (8 species)
    not a true protein

Species:

  1. 1941005Agkistrodon rhodostoma [TaxId:8717] [188575] (1 PDB entry)
  2. 1941010Brachyopsis rostratus [TaxId:412977] [188571] (1 PDB entry)
  3. 1941012Cucumaria echinata [TaxId:40245] [271988] (1 PDB entry)
  4. 1941017Human (Homo sapiens) [TaxId:9606] [187151] (9 PDB entries)
    1. Domains for 2h2r:
      1. 1941021Domain d2h2ra_: 2h2r A: [241995]
        automated match to d1t8ca1
      2. 1941022Domain d2h2rb_: 2h2r B: [241996]
        automated match to d1t8ca1
    2. Domain for 2h2t:
    3. Domains for 3bdw:
      1. 1941043Domain d3bdwb_: 3bdw B: [199086]
        Other proteins in same PDB: d3bdwa_, d3bdwc_
        automated match to d1fm5a_
      2. 1941044Domain d3bdwd_: 3bdw D: [199087]
        Other proteins in same PDB: d3bdwa_, d3bdwc_
        automated match to d1fm5a_
    4. Domains for 3cck:
      1. 1941023Domain d3ccka_: 3cck A: [173139]
        automated match to d1fm5a_
        complexed with cl
      2. 1941024Domain d3cckb_: 3cck B: [173140]
        automated match to d1fm5a_
        complexed with cl
    5. Domain for 3cfw:
    6. Domains for 3hup:
      1. 1941018Domain d3hupa_: 3hup A: [177850]
        automated match to d1fm5a_
        complexed with cl, na
      2. 1941019Domain d3hupb_: 3hup B: [177851]
        automated match to d1fm5a_
        complexed with cl, na
    7. Domain for 3l9j:
    8. Domains for 4m17:
      1. 1941030Domain d4m17a_: 4m17 A: [229658]
        automated match to d4m17f1
        complexed with ca; mutant
      2. 1941031Domain d4m17b_: 4m17 B: [235522]
        automated match to d4m17a_
        complexed with ca; mutant
      3. 1941032Domain d4m17c1: 4m17 C:235-355 [229657]
        automated match to d1pwba1
        complexed with ca; mutant
      4. 1941033Domain d4m17d1: 4m17 D:235-355 [229431]
        automated match to d1pwba1
        complexed with ca; mutant
      5. 1941034Domain d4m17e1: 4m17 E:235-355 [229432]
        automated match to d1pwba1
        complexed with ca; mutant
      6. 1941035Domain d4m17f1: 4m17 F:235-355 [229430]
        automated match to d1pwba1
        complexed with ca; mutant
      7. 1941036Domain d4m17g_: 4m17 G: [229660]
        automated match to d4m17f1
        complexed with ca; mutant
      8. 1941037Domain d4m17h_: 4m17 H: [235521]
        automated match to d4m17a_
        complexed with ca; mutant
      9. 1941038Domain d4m17i_: 4m17 I: [229662]
        automated match to d4m17f1
        complexed with ca; mutant
      10. 1941039Domain d4m17j_: 4m17 J: [229661]
        automated match to d4m17f1
        complexed with ca; mutant
      11. 1941040Domain d4m17k_: 4m17 K: [229656]
        automated match to d4m17f1
        complexed with ca; mutant
      12. 1941041Domain d4m17l_: 4m17 L: [229659]
        automated match to d4m17f1
        complexed with ca; mutant
    9. Domains for 4pdc:
      1. 1941025Domain d4pdca_: 4pdc A: [257483]
        automated match to d1hyrb_
      2. 1941026Domain d4pdcb_: 4pdc B: [258115]
        automated match to d1hyrb_
      3. 1941027Domain d4pdcc_: 4pdc C: [263469]
        automated match to d1hyrb_
      4. 1941028Domain d4pdcd_: 4pdc D: [263470]
        automated match to d1hyrb_
  5. 1941045Human herpesvirus 4 (strain b95-8) [TaxId:10377] [255828] (1 PDB entry)
  6. 1941048Malayan pit viper (Calloselasma rhodostoma) [TaxId:8717] [188489] (2 PDB entries)
    1. Domains for 2vrp:
      1. 1941049Domain d2vrpa_: 2vrp A: [168775]
        automated match to d1y17a1
        complexed with cl, na
      2. 1941050Domain d2vrpb_: 2vrp B: [168776]
        automated match to d1iodb_
        complexed with cl, na
    2. Domains for 3wwk:
      1. 1941051Domain d3wwka_: 3wwk A: [260626]
        Other proteins in same PDB: d3wwkc_, d3wwke_
        automated match to d3bx4c_
      2. 1941052Domain d3wwkd_: 3wwk D: [260625]
        Other proteins in same PDB: d3wwkc_, d3wwke_
        automated match to d3bx4c_
  7. 1941053Mouse (Mus musculus) [TaxId:10090] [187300] (3 PDB entries)
    1. Domain for 3c8k:
    2. Domains for 3cad:
      1. 1941057Domain d3cada_: 3cad A: [199175]
        automated match to d3cadb_
      2. 1941058Domain d3cadb_: 3cad B: [195143]
        automated match to d3g8ka_
    3. Domains for 3g8k:
      1. 1941054Domain d3g8ka_: 3g8k A: [176420]
        automated match to d1qo3c_
      2. 1941055Domain d3g8kb_: 3g8k B: [176421]
        automated match to d1qo3c_
  8. 1941059Sharp-nosed viper (Deinagkistrodon acutus) [TaxId:36307] [195597] (1 PDB entry)

More info for Protein automated matches from d.169.1.1: C-type lectin domain

Timeline for Protein automated matches from d.169.1.1: C-type lectin domain: