SCOPe Funding Alert: SCOPe support from the NIH ended in April 2016. John-Marc Chandonia is the primary maintainer and has continued to develop SCOPe using vacation time. Three proposals to the NIH for continued funding have been unsuccessful. If our current NIH proposal is not funded, SCOPe will shut down permanently in Summer 2017 as Dr. Chandonia will need to seek a new position.

Lineage for Protein: automated matches

  1. Root: SCOPe 2.06
  2. 2078559Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2130990Fold c.67: PLP-dependent transferase-like [53382] (3 superfamilies)
    main domain: 3 layers: a/b/a, mixed beta-sheet of 7 strands, order 3245671; strand 7 is antiparallel to the rest
  4. 2130991Superfamily c.67.1: PLP-dependent transferases [53383] (10 families) (S)
  5. 2130992Family c.67.1.1: AAT-like [53384] (17 protein domains)
  6. 2131336Protein automated matches [190317] (5 species)
    not a true protein

Species:

  1. 2131337Escherichia coli K-12 [TaxId:83333] [196886] (8 PDB entries)
    1. Domains for 4f5f:
      1. 2131352Domain d4f5fa1: 4f5f A:12-406 [196888]
        Other proteins in same PDB: d4f5fa2, d4f5fb2
        automated match to d1aama_
      2. 2131353Domain d4f5fb1: 4f5f B:12-406 [201998]
        Other proteins in same PDB: d4f5fa2, d4f5fb2
        automated match to d4f5fa_
    2. Domains for 4f5g:
      1. 2131342Domain d4f5ga1: 4f5g A:12-406 [201999]
        Other proteins in same PDB: d4f5ga2, d4f5gb2
        automated match to d4f5gb_
        mutant
      2. 2131343Domain d4f5gb1: 4f5g B:12-406 [196887]
        Other proteins in same PDB: d4f5ga2, d4f5gb2
        automated match to d1aama_
        mutant
    3. Domains for 4f5h:
      1. 2131340Domain d4f5ha1: 4f5h A:12-406 [202000]
        Other proteins in same PDB: d4f5ha2, d4f5hb2
        automated match to d4f5hb_
      2. 2131341Domain d4f5hb1: 4f5h B:12-406 [196889]
        Other proteins in same PDB: d4f5ha2, d4f5hb2
        automated match to d1aama_
    4. Domains for 4f5i:
      1. 2131348Domain d4f5ia1: 4f5i A:12-406 [196892]
        Other proteins in same PDB: d4f5ia2, d4f5ib2
        automated match to d1aama_
        complexed with mpd
      2. 2131349Domain d4f5ib1: 4f5i B:12-406 [202001]
        Other proteins in same PDB: d4f5ia2, d4f5ib2
        automated match to d4f5ia_
        complexed with mpd
    5. Domains for 4f5j:
      1. 2131346Domain d4f5ja1: 4f5j A:12-406 [196891]
        Other proteins in same PDB: d4f5ja2, d4f5jb2
        automated match to d1aama_
        mutant
      2. 2131347Domain d4f5jb1: 4f5j B:12-406 [202002]
        Other proteins in same PDB: d4f5ja2, d4f5jb2
        automated match to d4f5ja_
        mutant
    6. Domains for 4f5k:
      1. 2131350Domain d4f5ka1: 4f5k A:12-406 [202003]
        Other proteins in same PDB: d4f5ka2, d4f5kb2
        automated match to d4f5kb_
      2. 2131351Domain d4f5kb1: 4f5k B:12-406 [196890]
        Other proteins in same PDB: d4f5ka2, d4f5kb2
        automated match to d1aama_
    7. Domains for 4f5l:
      1. 2131338Domain d4f5la1: 4f5l A:12-406 [197086]
        Other proteins in same PDB: d4f5la2, d4f5lb2
        automated match to d1aama_
        complexed with edo; mutant
      2. 2131339Domain d4f5lb1: 4f5l B:12-406 [202004]
        Other proteins in same PDB: d4f5la2, d4f5lb2
        automated match to d4f5la_
        complexed with edo; mutant
    8. Domains for 4f5m:
      1. 2131344Domain d4f5ma1: 4f5m A:12-406 [202005]
        Other proteins in same PDB: d4f5ma2, d4f5mb2
        automated match to d4f5mb_
        complexed with edo
      2. 2131345Domain d4f5mb1: 4f5m B:12-405 [196893]
        Other proteins in same PDB: d4f5ma2, d4f5mb2
        automated match to d1aama_
        complexed with edo
  2. 2131354Garlic (Allium sativum) [TaxId:4682] [187134] (2 PDB entries)
    1. Domain for 2hor:
    2. Domains for 2hox:
      1. 2131355Domain d2hoxa_: 2hox A: [136644]
        automated match to d1lk9b_
        complexed with cl, nag, p1t
      2. 2131356Domain d2hoxb_: 2hox B: [136645]
        automated match to d1lk9b_
        complexed with cl, nag, p1t
      3. 2131357Domain d2hoxc_: 2hox C: [136646]
        automated match to d1lk9b_
        complexed with cl, nag, p1t
      4. 2131358Domain d2hoxd_: 2hox D: [136647]
        automated match to d1lk9b_
        complexed with cl, nag, p1t
  3. 2131360Human (Homo sapiens) [TaxId:9606] [188901] (8 PDB entries)
    1. Domains for 3fvs:
      1. 2131363Domain d3fvsa_: 3fvs A: [176084]
        automated match to d1w7la_
        complexed with gol, na
      2. 2131364Domain d3fvsb_: 3fvs B: [176085]
        automated match to d1w7la_
        complexed with gol, na
    2. Domains for 3fvu:
      1. 2131367Domain d3fvua_: 3fvu A: [176087]
        automated match to d1w7la_
        complexed with gol, iac, na
      2. 2131368Domain d3fvub_: 3fvu B: [176088]
        automated match to d1w7la_
        complexed with gol, iac, na
    3. Domains for 3fvx:
      1. 2131365Domain d3fvxa_: 3fvx A: [176089]
        automated match to d1w7la_
        complexed with na, trs
      2. 2131366Domain d3fvxb_: 3fvx B: [176090]
        automated match to d1w7la_
        complexed with na, trs
    4. Domain for 3wzf:
    5. Domains for 4wlh:
      1. 2131361Domain d4wlha_: 4wlh A: [267583]
        automated match to d3fvsa_
        complexed with it1
      2. 2131362Domain d4wlhb_: 4wlh B: [267584]
        automated match to d3fvsa_
        complexed with it1
    6. Domains for 4wlj:
      1. 2131369Domain d4wlja_: 4wlj A: [262114]
        automated match to d3fvsa_
        complexed with ik2
      2. 2131370Domain d4wljb_: 4wlj B: [261480]
        automated match to d3fvsa_
        complexed with ik2
    7. Domains for 4wp0:
      1. 2131371Domain d4wp0a1: 4wp0 A:4-422 [261184]
        Other proteins in same PDB: d4wp0a2, d4wp0b2, d4wp0d2
        automated match to d3fvsa_
      2. 2131372Domain d4wp0b1: 4wp0 B:4-422 [261185]
        Other proteins in same PDB: d4wp0a2, d4wp0b2, d4wp0d2
        automated match to d3fvsa_
      3. 2131373Domain d4wp0c_: 4wp0 C: [264135]
        Other proteins in same PDB: d4wp0a2, d4wp0b2, d4wp0d2
        automated match to d4wp0a_
      4. 2131374Domain d4wp0d1: 4wp0 D:4-422 [264136]
        Other proteins in same PDB: d4wp0a2, d4wp0b2, d4wp0d2
        automated match to d4wp0a_
    8. Domains for 5ax8:
      1. 2269459Domain d5ax8b_: 5ax8 B: [312765]
        automated match to d7aata_
      2. 2269535Domain d5ax8a_: 5ax8 A: [312840]
        automated match to d7aata_
      3. 2269624Domain d5ax8c_: 5ax8 C: [312929]
        automated match to d7aata_
      4. 2269660Domain d5ax8d_: 5ax8 D: [312965]
        automated match to d7aata_
  4. 2131376Mouse (Mus musculus) [TaxId:10090] [189353] (3 PDB entries)
    1. Domains for 3hlm:
      1. 2131385Domain d3hlma_: 3hlm A: [177674]
        automated match to d1akaa_
        complexed with gol
      2. 2131386Domain d3hlmb_: 3hlm B: [177675]
        automated match to d1akaa_
        complexed with gol
      3. 2131387Domain d3hlmc_: 3hlm C: [177676]
        automated match to d1akaa_
        complexed with gol
      4. 2131388Domain d3hlmd_: 3hlm D: [177677]
        automated match to d1akaa_
        complexed with gol
    2. Domains for 3pd6:
      1. 2131381Domain d3pd6a_: 3pd6 A: [183659]
        automated match to d1akaa_
        complexed with gol, kyn, pmp
      2. 2131382Domain d3pd6b_: 3pd6 B: [183660]
        automated match to d1akaa_
        complexed with gol, kyn, pmp
      3. 2131383Domain d3pd6c_: 3pd6 C: [183661]
        automated match to d1akaa_
        complexed with gol, kyn, pmp
      4. 2131384Domain d3pd6d_: 3pd6 D: [183662]
        automated match to d1akaa_
        complexed with gol, kyn, pmp
    3. Domains for 3pdb:
      1. 2131377Domain d3pdba_: 3pdb A: [183668]
        automated match to d1akaa_
        complexed with bme, gol, oaa, pmp
      2. 2131378Domain d3pdbb_: 3pdb B: [183669]
        automated match to d1akaa_
        complexed with bme, gol, oaa, pmp
      3. 2131379Domain d3pdbc_: 3pdb C: [183670]
        automated match to d1akaa_
        complexed with bme, gol, oaa, pmp
      4. 2131380Domain d3pdbd_: 3pdb D: [183671]
        automated match to d1akaa_
        complexed with bme, gol, oaa, pmp
  5. 2287144Sus scrofa [TaxId:9823] [330445] (4 PDB entries)
    1. Domains for 5ton:
      1. 2287157Domain d5tonb1: 5ton B:0-411 [330458]
        Other proteins in same PDB: d5tona2, d5tonb2
        automated match to d3wzfa_
        mutant
      2. 2287317Domain d5tona1: 5ton A:0-412 [330618]
        Other proteins in same PDB: d5tona2, d5tonb2
        automated match to d3wzfa_
        mutant
    2. Domains for 5toq:
      1. 2287145Domain d5toqa1: 5toq A:0-412 [330446]
        Other proteins in same PDB: d5toqa2, d5toqb2
        automated match to d3wzfa_
      2. 2287178Domain d5toqb1: 5toq B:0-411 [330479]
        Other proteins in same PDB: d5toqa2, d5toqb2
        automated match to d3wzfa_
    3. Domains for 5tor:
      1. 2287167Domain d5tora1: 5tor A:0-412 [330468]
        Other proteins in same PDB: d5tora2, d5torb2
        automated match to d3wzfa_
        mutant
      2. 2287173Domain d5torb1: 5tor B:0-411 [330474]
        Other proteins in same PDB: d5tora2, d5torb2
        automated match to d3wzfa_
        mutant
    4. Domains for 5tot:
      1. 2287162Domain d5totb1: 5tot B:0-411 [330463]
        Other proteins in same PDB: d5tota2, d5totb2
        automated match to d3wzfa_
        mutant
      2. 2287165Domain d5tota1: 5tot A:0-412 [330466]
        Other proteins in same PDB: d5tota2, d5totb2
        automated match to d3wzfa_
        mutant

More info for Protein automated matches from c.67.1.1: AAT-like

Timeline for Protein automated matches from c.67.1.1: AAT-like: