SCOPe 2.05: Protein: automated matches

Lineage for Protein: automated matches

Root: SCOPe 2.05
Class a: All alpha proteins [46456] (286 folds)
Fold a.4: DNA/RNA-binding 3-helical bundle [46688] (14 superfamilies)
core: 3-helices; bundle, closed or partly opened, right-handed twist; up-and down
Superfamily a.4.5: "Winged helix" DNA-binding domain [46785] (85 families)
contains a small beta-sheet (wing)
Family a.4.5.28: MarR-like transcriptional regulators [63379] (20 proteins)
The N- and C-terminal helical extensions to the common fold form the dimer interface
Protein automated matches [190294] (4 species)
not a true protein

Species:

Deinococcus radiodurans [TaxId:1299] [187697] (2 PDB entries)
1. Domain for 2fbk:
  - Domain d2fbkb_: 2fbk B: [133248]
    Other proteins in same PDB: d2fbka1
    automated match to d2fbka1
    complexed with cl
2. Domains for 5dd8:
  1. Domain d5dd8a_: 5dd8 A: [276705]
    automated match to d2fbka1
    complexed with cl; mutant
  2. Domain d5dd8b_: 5dd8 B: [276704]
    automated match to d2fbka1
    complexed with cl; mutant
Escherichia coli K-12 [TaxId:83333] [193218] (4 PDB entries)
1. Domains for 3vb2:
  1. Domain d3vb2a_: 3vb2 A: [194054]
    automated match to d1jgsa_
  2. Domain d3vb2b_: 3vb2 B: [194053]
    automated match to d1jgsa_
2. Domains for 3vod:
  1. Domain d3voda_: 3vod A: [193220]
    automated match to d1jgsa_
    mutant
  2. Domain d3vodb_: 3vod B: [193221]
    automated match to d1jgsa_
    mutant
3. Domains for 3voe:
  1. Domain d3voea_: 3voe A: [193219]
    automated match to d1jgsa_
  2. Domain d3voeb_: 3voe B: [201250]
    automated match to d3voea_
4. Domains for 4jba:
  1. Domain d4jbaa_: 4jba A: [228343]
    automated match to d3vb2b_
  2. Domain d4jbab_: 4jba B: [234952]
    automated match to d4jbaa_
Thermotoga maritima [TaxId:2336] [187380] (1 PDB entry)
- Domains for 2a61:
  1. Domain d2a61b_: 2a61 B: [126188]
    Other proteins in same PDB: d2a61a1
    automated match to d2a61a1
  2. Domain d2a61c_: 2a61 C: [126189]
    Other proteins in same PDB: d2a61a1
    automated match to d2a61a1
  3. Domain d2a61d_: 2a61 D: [126190]
    Other proteins in same PDB: d2a61a1
    automated match to d2a61a1
Yersinia pseudotuberculosis [TaxId:502800] [193529] (1 PDB entry)
- Domains for 4aih:
  1. Domain d4aiha_: 4aih A: [201432]
    automated match to d4aihe_
  2. Domain d4aihb_: 4aih B: [201433]
    automated match to d4aihe_
  3. Domain d4aihc_: 4aih C: [201434]
    automated match to d4aihe_
  4. Domain d4aihd_: 4aih D: [201435]
    automated match to d4aihe_
  5. Domain d4aihe_: 4aih E: [193530]
    automated match to d3q5fa_
  6. Domain d4aihf_: 4aih F: [201436]
    automated match to d4aihe_

More info for Protein automated matches from a.4.5.28: MarR-like transcriptional regulators

Timeline for Protein automated matches from a.4.5.28: MarR-like transcriptional regulators:

Protein automated matches from a.4.5.28: MarR-like transcriptional regulators first appeared in SCOPe 2.01
Protein automated matches from a.4.5.28: MarR-like transcriptional regulators appears in SCOPe 2.04
Protein automated matches from a.4.5.28: MarR-like transcriptional regulators appears in SCOPe 2.06
Protein automated matches from a.4.5.28: MarR-like transcriptional regulators appears in the current release, SCOPe 2.08