SCOPe Funding Alert: SCOPe support from the NIH ended in April 2016. John-Marc Chandonia is the primary maintainer and has continued to develop SCOPe using vacation time. Three proposals to the NIH for continued funding have been unsuccessful. If our current NIH proposal is not funded, SCOPe will shut down permanently in Summer 2017 as Dr. Chandonia will need to seek a new position.

Lineage for Protein: automated matches

  1. Root: SCOPe 2.06
  2. 2078559Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2136733Fold c.70: Nucleoside hydrolase [53589] (1 superfamily)
    core: 3 layers, a/b/a ; mixed beta-sheet of 8 strands, order 32145687; strand 7 is antiparallel to the rest
  4. 2136734Superfamily c.70.1: Nucleoside hydrolase [53590] (2 families) (S)
  5. 2136735Family c.70.1.1: Nucleoside hydrolase [53591] (5 protein domains)
    automatically mapped to Pfam PF01156
  6. 2136776Protein automated matches [190287] (3 species)
    not a true protein

Species:

  1. 2136777Trypanosoma brucei [TaxId:999953] [226742] (6 PDB entries)
    1. Domain for 4i70:
    2. Domain for 4i71:
    3. Domains for 4i72:
      1. 2136783Domain d4i72a1: 4i72 A:1-327 [222972]
        Other proteins in same PDB: d4i72a2, d4i72b2
        automated match to d1hoza_
        complexed with ca, ni, trs, ua2
      2. 2136784Domain d4i72b1: 4i72 B:1-327 [222973]
        Other proteins in same PDB: d4i72a2, d4i72b2
        automated match to d1hoza_
        complexed with ca, ni, trs, ua2
    4. Domains for 4i73:
      1. 2136785Domain d4i73a1: 4i73 A:1-327 [222974]
        Other proteins in same PDB: d4i73a2, d4i73c2, d4i73d2
        automated match to d1hoza_
        complexed with ca, mby, ni
      2. 2136786Domain d4i73b_: 4i73 B: [222975]
        Other proteins in same PDB: d4i73a2, d4i73c2, d4i73d2
        automated match to d1hoza_
        complexed with ca, mby, ni
      3. 2136787Domain d4i73c1: 4i73 C:1-327 [222976]
        Other proteins in same PDB: d4i73a2, d4i73c2, d4i73d2
        automated match to d1hoza_
        complexed with ca, mby, ni
      4. 2136788Domain d4i73d1: 4i73 D:1-327 [222977]
        Other proteins in same PDB: d4i73a2, d4i73c2, d4i73d2
        automated match to d1hoza_
        complexed with ca, mby, ni
    5. Domain for 4i74:
    6. Domains for 4i75:
      1. 2136781Domain d4i75a1: 4i75 A:1-327 [222979]
        Other proteins in same PDB: d4i75a2
        automated match to d1hoza_
        complexed with ca, ni, trs
      2. 2136782Domain d4i75b_: 4i75 B: [222980]
        Other proteins in same PDB: d4i75a2
        automated match to d1hoza_
        complexed with ca, ni, trs
  2. 2136789Trypanosoma vivax [TaxId:5699] [187091] (5 PDB entries)
    1. Domains for 2ff1:
      1. 2136796Domain d2ff1a2: 2ff1 A:2-327 [133360]
        Other proteins in same PDB: d2ff1a3, d2ff1b3
        automated match to d1hoza_
        complexed with ca, imh
      2. 2136797Domain d2ff1b2: 2ff1 B:2-327 [133361]
        Other proteins in same PDB: d2ff1a3, d2ff1b3
        automated match to d1hoza_
        complexed with ca, imh
    2. Domains for 2ff2:
      1. 2136798Domain d2ff2a_: 2ff2 A: [133362]
        Other proteins in same PDB: d2ff2b3
        automated match to d1hoza_
        complexed with ca, imh, ni
      2. 2136799Domain d2ff2b2: 2ff2 B:2-327 [133363]
        Other proteins in same PDB: d2ff2b3
        automated match to d1hoza_
        complexed with ca, imh, ni
    3. Domains for 3b9g:
      1. 2136792Domain d3b9ga1: 3b9g A:2-317 [172506]
        Other proteins in same PDB: d3b9ga2
        automated match to d1hoza_
        complexed with ca, imh, na; mutant
      2. 2136793Domain d3b9gb_: 3b9g B: [172507]
        Other proteins in same PDB: d3b9ga2
        automated match to d1hoza_
        complexed with ca, imh, na; mutant
    4. Domains for 3epw:
      1. 2136790Domain d3epwa_: 3epw A: [175148]
        automated match to d1hoza_
        complexed with ca, jmq, mg
      2. 2136791Domain d3epwb_: 3epw B: [175149]
        automated match to d1hoza_
        complexed with ca, jmq, mg
    5. Domains for 3epx:
      1. 2136794Domain d3epxa_: 3epx A: [175150]
        automated match to d1hoza_
        complexed with ca, gol, imq
      2. 2136795Domain d3epxb_: 3epx B: [175151]
        automated match to d1hoza_
        complexed with ca, gol, imq
  3. 2283966Leishmania braziliensis [TaxId:1448350] [327267] (1 PDB entry)

More info for Protein automated matches from c.70.1.1: Nucleoside hydrolase

Timeline for Protein automated matches from c.70.1.1: Nucleoside hydrolase: