SCOPe Funding Alert: SCOPe support from the NIH ended in April 2016. John-Marc Chandonia is the primary maintainer and has continued to develop SCOPe using vacation time. Three proposals to the NIH for continued funding have been unsuccessful. If our current NIH proposal is not funded, SCOPe will shut down permanently in Summer 2017 as Dr. Chandonia will need to seek a new position.

Lineage for Protein: automated matches

  1. Root: SCOPe 2.06
  2. 2078559Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2105373Fold c.26: Adenine nucleotide alpha hydrolase-like [52373] (3 superfamilies)
    core: 3 layers, a/b/a ; parallel beta-sheet of 5 strands, order 32145
  4. 2106293Superfamily c.26.2: Adenine nucleotide alpha hydrolases-like [52402] (7 families) (S)
    share similar mode of ligand (Adenosine group) binding
    can be subdivided into two group with closer relationships within each group than between the groups; the first three families form one group whereas the last two families form the other group
  5. 2106294Family c.26.2.1: N-type ATP pyrophosphatases [52403] (9 protein domains)
  6. 2106421Protein automated matches [190257] (4 species)
    not a true protein

Species:

  1. 2106422Helicobacter pylori [TaxId:210] [188123] (2 PDB entries)
    1. Domain for 1xng:
    2. Domain for 1xnh:
  2. 2106425Pyrococcus horikoshii [TaxId:53953] [187044] (1 PDB entry)
  3. 2106429Salmonella typhimurium [TaxId:90371] [188917] (1 PDB entry)
  4. 2285553Streptococcus pyogenes [TaxId:471876] [328854] (2 PDB entries)
    1. Domains for 5huh:
      1. 2285575Domain d5huhb_: 5huh B: [328876]
        automated match to d3hmqa_
        complexed with mg, so4
      2. 2285589Domain d5huha_: 5huh A: [328890]
        automated match to d3hmqa_
        complexed with mg, so4
    2. Domains for 5huj:
      1. 2285554Domain d5hujb_: 5huj B: [328855]
        automated match to d3hmqa_
        complexed with cl
      2. 2285586Domain d5huja_: 5huj A: [328887]
        automated match to d3hmqa_
        complexed with cl

More info for Protein automated matches from c.26.2.1: N-type ATP pyrophosphatases

Timeline for Protein automated matches from c.26.2.1: N-type ATP pyrophosphatases: