Lineage for Protein: automated matches

  1. Root: SCOPe 2.06
  2. 2078559Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2078560Fold c.1: TIM beta/alpha-barrel [51350] (33 superfamilies)
    contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678
    the first seven superfamilies have similar phosphate-binding sites
  4. 2081496Superfamily c.1.8: (Trans)glycosidases [51445] (15 families) (S)
  5. 2082913Family c.1.8.4: Family 1 of glycosyl hydrolase [51521] (6 protein domains)
  6. 2083072Protein automated matches [190245] (11 species)
    not a true protein

Species:

  1. 2083073Acidilobus saccharovorans [TaxId:666510] [194546] (2 PDB entries)
    1. Domain for 4ha3:
    2. Domain for 4ha4:
  2. 2083076Camellia sinensis [TaxId:4442] [256516] (3 PDB entries)
    1. Domains for 3wq4:
      1. 2083081Domain d3wq4a_: 3wq4 A: [256517]
        automated match to d1cbga_
        complexed with nag
      2. 2083082Domain d3wq4b_: 3wq4 B: [262443]
        automated match to d1cbga_
        complexed with nag
    2. Domains for 3wq5:
      1. 2083079Domain d3wq5a_: 3wq5 A: [265718]
        automated match to d1cbga_
        complexed with nag, vpa
      2. 2083080Domain d3wq5b_: 3wq5 B: [265719]
        automated match to d1cbga_
        complexed with nag, vpa
    3. Domains for 3wq6:
      1. 2083077Domain d3wq6a_: 3wq6 A: [265720]
        automated match to d1cbga_
        complexed with nag, zpa
      2. 2083078Domain d3wq6b_: 3wq6 B: [265721]
        automated match to d1cbga_
        complexed with nag, zpa
  3. 2083083Pyrococcus furiosus [TaxId:2261] [189762] (2 PDB entries)
    1. Domains for 3apg:
      1. 2083088Domain d3apga1: 3apg A:2-471 [172296]
        Other proteins in same PDB: d3apga2, d3apgb2, d3apgc2, d3apgd2
        automated match to d1qvba_
        complexed with gol
      2. 2083089Domain d3apgb1: 3apg B:2-471 [172297]
        Other proteins in same PDB: d3apga2, d3apgb2, d3apgc2, d3apgd2
        automated match to d1qvba_
        complexed with gol
      3. 2083090Domain d3apgc1: 3apg C:2-471 [172298]
        Other proteins in same PDB: d3apga2, d3apgb2, d3apgc2, d3apgd2
        automated match to d1qvba_
        complexed with gol
      4. 2083091Domain d3apgd1: 3apg D:2-471 [172299]
        Other proteins in same PDB: d3apga2, d3apgb2, d3apgc2, d3apgd2
        automated match to d1qvba_
        complexed with gol
    2. Domains for 3wdp:
      1. 2083084Domain d3wdpp1: 3wdp P:2-472 [239912]
        Other proteins in same PDB: d3wdpp2, d3wdpq2, d3wdpr2, d3wdps2
        automated match to d3wdpq_
        complexed with gol, po4; mutant
      2. 2083085Domain d3wdpq1: 3wdp Q:2-472 [237741]
        Other proteins in same PDB: d3wdpp2, d3wdpq2, d3wdpr2, d3wdps2
        automated match to d1uwsa_
        complexed with gol, po4; mutant
      3. 2083086Domain d3wdpr1: 3wdp R:2-472 [239913]
        Other proteins in same PDB: d3wdpp2, d3wdpq2, d3wdpr2, d3wdps2
        automated match to d3wdpq_
        complexed with gol, po4; mutant
      4. 2083087Domain d3wdps1: 3wdp S:2-472 [239914]
        Other proteins in same PDB: d3wdpp2, d3wdpq2, d3wdpr2, d3wdps2
        automated match to d3wdpq_
        complexed with gol, po4; mutant
  4. 2083092Secale cereale [TaxId:4550] [255749] (3 PDB entries)
    1. Domain for 3aiu:
    2. Domain for 3aiv:
    3. Domain for 3aiw:
  5. 2083096Sulfolobus solfataricus [TaxId:273057] [195161] (4 PDB entries)
    1. Domains for 4eam:
      1. 2083097Domain d4eama_: 4eam A: [195162]
        automated match to d1gowa_
        complexed with cl, mpd, trs
      2. 2083098Domain d4eamb_: 4eam B: [195163]
        automated match to d1gowa_
        complexed with cl, mpd, trs
    2. Domains for 4ean:
      1. 2083099Domain d4eana_: 4ean A: [220391]
        automated match to d4eamb_
        complexed with cl, ind, mpd
      2. 2083100Domain d4eanb_: 4ean B: [220392]
        automated match to d4eamb_
        complexed with cl, ind, mpd
    3. Domains for 5i3d:
      1. 2285906Domain d5i3da_: 5i3d A: [329207]
        automated match to d4eama_
        complexed with act, pe8; mutant
      2. 2285925Domain d5i3db_: 5i3d B: [329226]
        automated match to d4eama_
        complexed with act, pe8; mutant
      3. 2285951Domain d5i3dc_: 5i3d C: [329252]
        automated match to d4eama_
        complexed with act, pe8; mutant
      4. 2285954Domain d5i3dd_: 5i3d D: [329255]
        automated match to d4eama_
        complexed with act, pe8; mutant
    4. Domains for 5ixe:
      1. 2276461Domain d5ixeb_: 5ixe B: [319762]
        automated match to d4eama_
        complexed with 14o, cl, mpd
      2. 2276507Domain d5ixea_: 5ixe A: [319808]
        automated match to d4eama_
        complexed with 14o, cl, mpd
  6. 2083101Thermotoga maritima [TaxId:2336] [187021] (20 PDB entries)
    1. Domains for 2cbu:
      1. 2083112Domain d2cbua_: 2cbu A: [130192]
        automated match to d1od0b_
        complexed with act, ca, cts
      2. 2083113Domain d2cbub_: 2cbu B: [130193]
        automated match to d1od0b_
        complexed with act, ca, cts
    2. Domains for 2cbv:
      1. 2083120Domain d2cbva_: 2cbv A: [130194]
        automated match to d1od0b_
        complexed with act, cgb
      2. 2083121Domain d2cbvb_: 2cbv B: [130195]
        automated match to d1od0b_
        complexed with act, cgb
    3. Domains for 2ces:
      1. 2083144Domain d2cesa_: 2ces A: [130356]
        automated match to d1od0b_
        complexed with act, ca, gim
      2. 2083145Domain d2cesb_: 2ces B: [130357]
        automated match to d1od0b_
        complexed with act, ca, gim
    4. Domains for 2cet:
      1. 2083134Domain d2ceta_: 2cet A: [130358]
        automated match to d1od0b_
        complexed with act, ca, pgi
      2. 2083135Domain d2cetb_: 2cet B: [130359]
        automated match to d1od0b_
        complexed with act, ca, pgi
    5. Domains for 2j75:
      1. 2083116Domain d2j75a_: 2j75 A: [138095]
        automated match to d1od0b_
        complexed with act, ca, noy
      2. 2083117Domain d2j75b_: 2j75 B: [138096]
        automated match to d1od0b_
        complexed with act, ca, noy
    6. Domains for 2j77:
      1. 2083136Domain d2j77a_: 2j77 A: [138097]
        automated match to d1od0b_
        complexed with act, ca, noj
      2. 2083137Domain d2j77b_: 2j77 B: [138098]
        automated match to d1od0b_
        complexed with act, ca, noj
    7. Domains for 2j78:
      1. 2083102Domain d2j78a_: 2j78 A: [138099]
        Other proteins in same PDB: d2j78b3
        automated match to d1od0b_
        complexed with act, ca, edo, gox
      2. 2083103Domain d2j78b2: 2j78 B:2-444 [138100]
        Other proteins in same PDB: d2j78b3
        automated match to d1od0b_
        complexed with act, ca, edo, gox
    8. Domains for 2j79:
      1. 2083124Domain d2j79a_: 2j79 A: [138101]
        automated match to d1od0b_
        complexed with act, ca, gtl
      2. 2083125Domain d2j79b_: 2j79 B: [138102]
        automated match to d1od0b_
        complexed with act, ca, gtl
    9. Domains for 2j7b:
      1. 2083114Domain d2j7ba_: 2j7b A: [138103]
        automated match to d1od0b_
        complexed with act, ca, ntz
      2. 2083115Domain d2j7bb_: 2j7b B: [138104]
        automated match to d1od0b_
        complexed with act, ca, ntz
    10. Domains for 2j7c:
      1. 2083138Domain d2j7ca_: 2j7c A: [138105]
        automated match to d1od0b_
        complexed with act, ca, ide
      2. 2083139Domain d2j7cb_: 2j7c B: [138106]
        automated match to d1od0b_
        complexed with act, ca, ide
    11. Domains for 2j7d:
      1. 2083142Domain d2j7da_: 2j7d A: [138107]
        automated match to d1od0b_
        complexed with act, ca, gi1
      2. 2083143Domain d2j7db_: 2j7d B: [138108]
        automated match to d1od0b_
        complexed with act, ca, gi1
    12. Domains for 2j7e:
      1. 2083140Domain d2j7ea_: 2j7e A: [138109]
        automated match to d1od0b_
        complexed with act, ca, gi2
      2. 2083141Domain d2j7eb_: 2j7e B: [138110]
        automated match to d1od0b_
        complexed with act, ca, gi2
    13. Domains for 2j7f:
      1. 2083146Domain d2j7fa_: 2j7f A: [138111]
        automated match to d1od0b_
        complexed with act, ca, gi3
      2. 2083147Domain d2j7fb_: 2j7f B: [138112]
        automated match to d1od0b_
        complexed with act, ca, gi3
    14. Domains for 2j7g:
      1. 2083118Domain d2j7ga_: 2j7g A: [138113]
        automated match to d1od0b_
        complexed with act, ca, gi4
      2. 2083119Domain d2j7gb_: 2j7g B: [138114]
        automated match to d1od0b_
        complexed with act, ca, gi4
    15. Domains for 2j7h:
      1. 2083126Domain d2j7ha_: 2j7h A: [138115]
        automated match to d1od0b_
        complexed with act, azf, ca
      2. 2083127Domain d2j7hb_: 2j7h B: [138116]
        automated match to d1od0b_
        complexed with act, azf, ca
    16. Domains for 2jal:
      1. 2083132Domain d2jala_: 2jal A: [138241]
        automated match to d1od0b_
        complexed with act, ca, yll
      2. 2083133Domain d2jalb_: 2jal B: [138242]
        automated match to d1od0b_
        complexed with act, ca, yll
    17. Domains for 2vrj:
      1. 2083122Domain d2vrja_: 2vrj A: [153512]
        automated match to d1od0b_
        complexed with act, ca, ncw
      2. 2083123Domain d2vrjb_: 2vrj B: [153513]
        automated match to d1od0b_
        complexed with act, ca, ncw
    18. Domains for 2wbg:
      1. 2083108Domain d2wbga_: 2wbg A: [169183]
        automated match to d1od0b_
        complexed with act, lgs
      2. 2083109Domain d2wbgb_: 2wbg B: [169184]
        automated match to d1od0b_
        complexed with act, lgs
      3. 2083110Domain d2wbgc_: 2wbg C: [169185]
        automated match to d1od0b_
        complexed with act, lgs
      4. 2083111Domain d2wbgd_: 2wbg D: [169186]
        automated match to d1od0b_
        complexed with act, lgs
    19. Domains for 2wc3:
      1. 2083128Domain d2wc3a_: 2wc3 A: [169198]
        automated match to d1od0b_
        complexed with am3
      2. 2083129Domain d2wc3b_: 2wc3 B: [169199]
        automated match to d1od0b_
        complexed with am3
      3. 2083130Domain d2wc3c_: 2wc3 C: [169200]
        automated match to d1od0b_
        complexed with am3
      4. 2083131Domain d2wc3d_: 2wc3 D: [169201]
        automated match to d1od0b_
        complexed with am3
    20. Domains for 2wc4:
      1. 2083104Domain d2wc4a_: 2wc4 A: [169202]
        automated match to d1od0b_
        complexed with act, amf, ca, edo
      2. 2083105Domain d2wc4b_: 2wc4 B: [169203]
        automated match to d1od0b_
        complexed with act, amf, ca, edo
      3. 2083106Domain d2wc4c_: 2wc4 C: [169204]
        automated match to d1od0b_
        complexed with act, amf, ca, edo
      4. 2083107Domain d2wc4d_: 2wc4 D: [169205]
        automated match to d1od0b_
        complexed with act, amf, ca, edo
  7. 2083148Thermotoga maritima [TaxId:243274] [256277] (1 PDB entry)
  8. 2083152Thermus thermophilus HB8 [TaxId:300852] [193939] (1 PDB entry)
  9. 2083156Thermus thermophilus [TaxId:274] [193989] (1 PDB entry)
  10. 2083160Wheat (Triticum aestivum) [TaxId:4565] [255115] (4 PDB entries)
    1. Domain for 2dga:
    2. Domain for 3aiq:
    3. Domain for 3air:
    4. Domain for 3ais:
  11. 2286141Thermotoga neapolitana [TaxId:2337] [329442] (1 PDB entry)

More info for Protein automated matches from c.1.8.4: Family 1 of glycosyl hydrolase

Timeline for Protein automated matches from c.1.8.4: Family 1 of glycosyl hydrolase: