SCOPe Funding Alert: SCOPe support from the NIH ended in April 2016. John-Marc Chandonia is the primary maintainer and has continued to develop SCOPe using vacation time. Three proposals to the NIH for continued funding have been unsuccessful. If our current NIH proposal is not funded, SCOPe will shut down permanently in Summer 2017 as Dr. Chandonia will need to seek a new position.

Lineage for Protein: automated matches

  1. Root: SCOPe 2.06
  2. 2078559Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2078560Fold c.1: TIM beta/alpha-barrel [51350] (33 superfamilies)
    contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678
    the first seven superfamilies have similar phosphate-binding sites
  4. 2081496Superfamily c.1.8: (Trans)glycosidases [51445] (15 families) (S)
  5. 2082913Family c.1.8.4: Family 1 of glycosyl hydrolase [51521] (6 protein domains)
  6. 2083072Protein automated matches [190245] (11 species)
    not a true protein

Species:

  1. 2083073Acidilobus saccharovorans [TaxId:666510] [194546] (2 PDB entries)
    1. Domain for 4ha3:
    2. Domain for 4ha4:
  2. 2083076Camellia sinensis [TaxId:4442] [256516] (3 PDB entries)
    1. Domains for 3wq4:
      1. 2083081Domain d3wq4a_: 3wq4 A: [256517]
        automated match to d1cbga_
        complexed with nag
      2. 2083082Domain d3wq4b_: 3wq4 B: [262443]
        automated match to d1cbga_
        complexed with nag
    2. Domains for 3wq5:
      1. 2083079Domain d3wq5a_: 3wq5 A: [265718]
        automated match to d1cbga_
        complexed with nag, vpa
      2. 2083080Domain d3wq5b_: 3wq5 B: [265719]
        automated match to d1cbga_
        complexed with nag, vpa
    3. Domains for 3wq6:
      1. 2083077Domain d3wq6a_: 3wq6 A: [265720]
        automated match to d1cbga_
        complexed with nag, zpa
      2. 2083078Domain d3wq6b_: 3wq6 B: [265721]
        automated match to d1cbga_
        complexed with nag, zpa
  3. 2083083Pyrococcus furiosus [TaxId:2261] [189762] (2 PDB entries)
    1. Domains for 3apg:
      1. 2083088Domain d3apga1: 3apg A:2-471 [172296]
        Other proteins in same PDB: d3apga2, d3apgb2, d3apgc2, d3apgd2
        automated match to d1qvba_
        complexed with gol
      2. 2083089Domain d3apgb1: 3apg B:2-471 [172297]
        Other proteins in same PDB: d3apga2, d3apgb2, d3apgc2, d3apgd2
        automated match to d1qvba_
        complexed with gol
      3. 2083090Domain d3apgc1: 3apg C:2-471 [172298]
        Other proteins in same PDB: d3apga2, d3apgb2, d3apgc2, d3apgd2
        automated match to d1qvba_
        complexed with gol
      4. 2083091Domain d3apgd1: 3apg D:2-471 [172299]
        Other proteins in same PDB: d3apga2, d3apgb2, d3apgc2, d3apgd2
        automated match to d1qvba_
        complexed with gol
    2. Domains for 3wdp:
      1. 2083084Domain d3wdpp1: 3wdp P:2-472 [239912]
        Other proteins in same PDB: d3wdpp2, d3wdpq2, d3wdpr2, d3wdps2
        automated match to d3wdpq_
        complexed with gol, po4; mutant
      2. 2083085Domain d3wdpq1: 3wdp Q:2-472 [237741]
        Other proteins in same PDB: d3wdpp2, d3wdpq2, d3wdpr2, d3wdps2
        automated match to d1uwsa_
        complexed with gol, po4; mutant
      3. 2083086Domain d3wdpr1: 3wdp R:2-472 [239913]
        Other proteins in same PDB: d3wdpp2, d3wdpq2, d3wdpr2, d3wdps2
        automated match to d3wdpq_
        complexed with gol, po4; mutant
      4. 2083087Domain d3wdps1: 3wdp S:2-472 [239914]
        Other proteins in same PDB: d3wdpp2, d3wdpq2, d3wdpr2, d3wdps2
        automated match to d3wdpq_
        complexed with gol, po4; mutant
  4. 2083092Secale cereale [TaxId:4550] [255749] (3 PDB entries)
    1. Domain for 3aiu:
    2. Domain for 3aiv:
    3. Domain for 3aiw:
  5. 2083096Sulfolobus solfataricus [TaxId:273057] [195161] (4 PDB entries)
    1. Domains for 4eam:
      1. 2083097Domain d4eama_: 4eam A: [195162]
        automated match to d1gowa_
        complexed with cl, mpd, trs
      2. 2083098Domain d4eamb_: 4eam B: [195163]
        automated match to d1gowa_
        complexed with cl, mpd, trs
    2. Domains for 4ean:
      1. 2083099Domain d4eana_: 4ean A: [220391]
        automated match to d4eamb_
        complexed with cl, ind, mpd
      2. 2083100Domain d4eanb_: 4ean B: [220392]
        automated match to d4eamb_
        complexed with cl, ind, mpd
    3. Domains for 5i3d:
      1. 2285906Domain d5i3da_: 5i3d A: [329207]
        automated match to d4eama_
        complexed with act, pe8; mutant
      2. 2285925Domain d5i3db_: 5i3d B: [329226]
        automated match to d4eama_
        complexed with act, pe8; mutant
      3. 2285951Domain d5i3dc_: 5i3d C: [329252]
        automated match to d4eama_
        complexed with act, pe8; mutant
      4. 2285954Domain d5i3dd_: 5i3d D: [329255]
        automated match to d4eama_
        complexed with act, pe8; mutant
    4. Domains for 5ixe:
      1. 2276461Domain d5ixeb_: 5ixe B: [319762]
        automated match to d4eama_
        complexed with 14o, cl, mpd
      2. 2276507Domain d5ixea_: 5ixe A: [319808]
        automated match to d4eama_
        complexed with 14o, cl, mpd
  6. 2083101Thermotoga maritima [TaxId:2336] [187021] (20 PDB entries)
    1. Domains for 2cbu:
      1. 2083112Domain d2cbua_: 2cbu A: [130192]
        automated match to d1od0b_
        complexed with act, ca, cts
      2. 2083113Domain d2cbub_: 2cbu B: [130193]
        automated match to d1od0b_
        complexed with act, ca, cts
    2. Domains for 2cbv:
      1. 2083120Domain d2cbva_: 2cbv A: [130194]
        automated match to d1od0b_
        complexed with act, cgb
      2. 2083121Domain d2cbvb_: 2cbv B: [130195]
        automated match to d1od0b_
        complexed with act, cgb
    3. Domains for 2ces:
      1. 2083144Domain d2cesa_: 2ces A: [130356]
        automated match to d1od0b_
        complexed with act, ca, gim
      2. 2083145Domain d2cesb_: 2ces B: [130357]
        automated match to d1od0b_
        complexed with act, ca, gim
    4. Domains for 2cet:
      1. 2083134Domain d2ceta_: 2cet A: [130358]
        automated match to d1od0b_
        complexed with act, ca, pgi
      2. 2083135Domain d2cetb_: 2cet B: [130359]
        automated match to d1od0b_
        complexed with act, ca, pgi
    5. Domains for 2j75:
      1. 2083116Domain d2j75a_: 2j75 A: [138095]
        automated match to d1od0b_
        complexed with act, ca, noy
      2. 2083117Domain d2j75b_: 2j75 B: [138096]
        automated match to d1od0b_
        complexed with act, ca, noy
    6. Domains for 2j77:
      1. 2083136Domain d2j77a_: 2j77 A: [138097]
        automated match to d1od0b_
        complexed with act, ca, noj
      2. 2083137Domain d2j77b_: 2j77 B: [138098]
        automated match to d1od0b_
        complexed with act, ca, noj
    7. Domains for 2j78:
      1. 2083102Domain d2j78a_: 2j78 A: [138099]
        Other proteins in same PDB: d2j78b3
        automated match to d1od0b_
        complexed with act, ca, edo, gox
      2. 2083103Domain d2j78b2: 2j78 B:2-444 [138100]
        Other proteins in same PDB: d2j78b3
        automated match to d1od0b_
        complexed with act, ca, edo, gox
    8. Domains for 2j79:
      1. 2083124Domain d2j79a_: 2j79 A: [138101]
        automated match to d1od0b_
        complexed with act, ca, gtl
      2. 2083125Domain d2j79b_: 2j79 B: [138102]
        automated match to d1od0b_
        complexed with act, ca, gtl
    9. Domains for 2j7b:
      1. 2083114Domain d2j7ba_: 2j7b A: [138103]
        automated match to d1od0b_
        complexed with act, ca, ntz
      2. 2083115Domain d2j7bb_: 2j7b B: [138104]
        automated match to d1od0b_
        complexed with act, ca, ntz
    10. Domains for 2j7c:
      1. 2083138Domain d2j7ca_: 2j7c A: [138105]
        automated match to d1od0b_
        complexed with act, ca, ide
      2. 2083139Domain d2j7cb_: 2j7c B: [138106]
        automated match to d1od0b_
        complexed with act, ca, ide
    11. Domains for 2j7d:
      1. 2083142Domain d2j7da_: 2j7d A: [138107]
        automated match to d1od0b_
        complexed with act, ca, gi1
      2. 2083143Domain d2j7db_: 2j7d B: [138108]
        automated match to d1od0b_
        complexed with act, ca, gi1
    12. Domains for 2j7e:
      1. 2083140Domain d2j7ea_: 2j7e A: [138109]
        automated match to d1od0b_
        complexed with act, ca, gi2
      2. 2083141Domain d2j7eb_: 2j7e B: [138110]
        automated match to d1od0b_
        complexed with act, ca, gi2
    13. Domains for 2j7f:
      1. 2083146Domain d2j7fa_: 2j7f A: [138111]
        automated match to d1od0b_
        complexed with act, ca, gi3
      2. 2083147Domain d2j7fb_: 2j7f B: [138112]
        automated match to d1od0b_
        complexed with act, ca, gi3
    14. Domains for 2j7g:
      1. 2083118Domain d2j7ga_: 2j7g A: [138113]
        automated match to d1od0b_
        complexed with act, ca, gi4
      2. 2083119Domain d2j7gb_: 2j7g B: [138114]
        automated match to d1od0b_
        complexed with act, ca, gi4
    15. Domains for 2j7h:
      1. 2083126Domain d2j7ha_: 2j7h A: [138115]
        automated match to d1od0b_
        complexed with act, azf, ca
      2. 2083127Domain d2j7hb_: 2j7h B: [138116]
        automated match to d1od0b_
        complexed with act, azf, ca
    16. Domains for 2jal:
      1. 2083132Domain d2jala_: 2jal A: [138241]
        automated match to d1od0b_
        complexed with act, ca, yll
      2. 2083133Domain d2jalb_: 2jal B: [138242]
        automated match to d1od0b_
        complexed with act, ca, yll
    17. Domains for 2vrj:
      1. 2083122Domain d2vrja_: 2vrj A: [153512]
        automated match to d1od0b_
        complexed with act, ca, ncw
      2. 2083123Domain d2vrjb_: 2vrj B: [153513]
        automated match to d1od0b_
        complexed with act, ca, ncw
    18. Domains for 2wbg:
      1. 2083108Domain d2wbga_: 2wbg A: [169183]
        automated match to d1od0b_
        complexed with act, lgs
      2. 2083109Domain d2wbgb_: 2wbg B: [169184]
        automated match to d1od0b_
        complexed with act, lgs
      3. 2083110Domain d2wbgc_: 2wbg C: [169185]
        automated match to d1od0b_
        complexed with act, lgs
      4. 2083111Domain d2wbgd_: 2wbg D: [169186]
        automated match to d1od0b_
        complexed with act, lgs
    19. Domains for 2wc3:
      1. 2083128Domain d2wc3a_: 2wc3 A: [169198]
        automated match to d1od0b_
        complexed with am3
      2. 2083129Domain d2wc3b_: 2wc3 B: [169199]
        automated match to d1od0b_
        complexed with am3
      3. 2083130Domain d2wc3c_: 2wc3 C: [169200]
        automated match to d1od0b_
        complexed with am3
      4. 2083131Domain d2wc3d_: 2wc3 D: [169201]
        automated match to d1od0b_
        complexed with am3
    20. Domains for 2wc4:
      1. 2083104Domain d2wc4a_: 2wc4 A: [169202]
        automated match to d1od0b_
        complexed with act, amf, ca, edo
      2. 2083105Domain d2wc4b_: 2wc4 B: [169203]
        automated match to d1od0b_
        complexed with act, amf, ca, edo
      3. 2083106Domain d2wc4c_: 2wc4 C: [169204]
        automated match to d1od0b_
        complexed with act, amf, ca, edo
      4. 2083107Domain d2wc4d_: 2wc4 D: [169205]
        automated match to d1od0b_
        complexed with act, amf, ca, edo
  7. 2083148Thermotoga maritima [TaxId:243274] [256277] (1 PDB entry)
  8. 2083152Thermus thermophilus HB8 [TaxId:300852] [193939] (1 PDB entry)
  9. 2083156Thermus thermophilus [TaxId:274] [193989] (1 PDB entry)
  10. 2083160Wheat (Triticum aestivum) [TaxId:4565] [255115] (4 PDB entries)
    1. Domain for 2dga:
    2. Domain for 3aiq:
    3. Domain for 3air:
    4. Domain for 3ais:
  11. 2286141Thermotoga neapolitana [TaxId:2337] [329442] (1 PDB entry)

More info for Protein automated matches from c.1.8.4: Family 1 of glycosyl hydrolase

Timeline for Protein automated matches from c.1.8.4: Family 1 of glycosyl hydrolase: