SCOPe Funding Alert: SCOPe support from the NIH ended in April 2016. John-Marc Chandonia is the primary maintainer and has continued to develop SCOPe using vacation time. Three proposals to the NIH for continued funding have been unsuccessful. If our current NIH proposal is not funded, SCOPe will shut down permanently in Summer 2017 as Dr. Chandonia will need to seek a new position.

Lineage for Protein: automated matches

  1. Root: SCOPe 2.06
  2. 2017114Class b: All beta proteins [48724] (177 folds)
  3. 2038038Fold b.7: C2 domain-like [49561] (5 superfamilies)
    sandwich; 8 strands in 2 sheets; greek-key
  4. 2038039Superfamily b.7.1: C2 domain (Calcium/lipid-binding domain, CaLB) [49562] (3 families) (S)
    two constituent families are related by circular permutation
  5. 2038183Family b.7.1.2: Synaptotagmin-like (S variant) [49575] (11 protein domains)
    topologically similar to the C-terminal domain of PapD
  6. 2038246Protein automated matches [190234] (3 species)
    not a true protein

Species:

  1. 2038247Human (Homo sapiens) [TaxId:9606] [188037] (3 PDB entries)
    1. Domain for 2n1t:
    2. Domains for 2uzp:
      1. 2038248Domain d2uzpa_: 2uzp A: [168259]
        automated match to d1dsya_
        complexed with ca, co, edo, plp, so4
      2. 2038249Domain d2uzpb_: 2uzp B: [168260]
        automated match to d1dsya_
        complexed with ca, co, edo, plp, so4
      3. 2038250Domain d2uzpc_: 2uzp C: [168261]
        automated match to d1dsya_
        complexed with ca, co, edo, plp, so4
    3. Domain for 4dnl:
  2. 2038253Norway rat (Rattus norvegicus) [TaxId:10116] [186999] (7 PDB entries)
    1. Domain for 2bwq:
    2. Domain for 2cm5:
    3. Domains for 2cm6:
      1. 2038259Domain d2cm6a_: 2cm6 A: [130614]
        automated match to d3rpba_
        complexed with ca, po4
      2. 2038260Domain d2cm6b_: 2cm6 B: [130615]
        automated match to d3rpba_
        complexed with ca, po4
    4. Domain for 2nce:
    5. Domains for 2yoa:
      1. 2038257Domain d2yoaa1: 2yoa A:271-418 [197125]
        Other proteins in same PDB: d2yoaa2
        automated match to d1uova_
        complexed with ca, scn, sep
      2. 2038258Domain d2yoab_: 2yoa B: [197129]
        Other proteins in same PDB: d2yoaa2
        automated match to d1uova_
        complexed with ca, scn, sep
    6. Domain for 4wee:
    7. Domains for 5ccj:
      1. 2038261Domain d5ccja_: 5ccj A: [275846]
        Other proteins in same PDB: d5ccjd2
        automated match to d2lhaa_
        complexed with gol, so4; mutant
      2. 2038262Domain d5ccjb_: 5ccj B: [275847]
        Other proteins in same PDB: d5ccjd2
        automated match to d2lhaa_
        complexed with gol, so4; mutant
      3. 2038263Domain d5ccjc_: 5ccj C: [275848]
        Other proteins in same PDB: d5ccjd2
        automated match to d2lhaa_
        complexed with gol, so4; mutant
      4. 2038264Domain d5ccjd1: 5ccj D:271-421 [275849]
        Other proteins in same PDB: d5ccjd2
        automated match to d2lhaa_
        complexed with gol, so4; mutant
  3. 2292111Mus musculus [TaxId:10090] [335412] (1 PDB entry)

More info for Protein automated matches from b.7.1.2: Synaptotagmin-like (S variant)

Timeline for Protein automated matches from b.7.1.2: Synaptotagmin-like (S variant):