Lineage for Protein: automated matches

  1. Root: SCOPe 2.06
  2. 2017114Class b: All beta proteins [48724] (177 folds)
  3. 2038038Fold b.7: C2 domain-like [49561] (5 superfamilies)
    sandwich; 8 strands in 2 sheets; greek-key
  4. 2038039Superfamily b.7.1: C2 domain (Calcium/lipid-binding domain, CaLB) [49562] (3 families) (S)
    two constituent families are related by circular permutation
  5. 2038183Family b.7.1.2: Synaptotagmin-like (S variant) [49575] (11 protein domains)
    topologically similar to the C-terminal domain of PapD
  6. 2038246Protein automated matches [190234] (3 species)
    not a true protein

Species:

  1. 2038247Human (Homo sapiens) [TaxId:9606] [188037] (3 PDB entries)
    1. Domain for 2n1t:
    2. Domains for 2uzp:
      1. 2038248Domain d2uzpa_: 2uzp A: [168259]
        automated match to d1dsya_
        complexed with ca, co, edo, plp, so4
      2. 2038249Domain d2uzpb_: 2uzp B: [168260]
        automated match to d1dsya_
        complexed with ca, co, edo, plp, so4
      3. 2038250Domain d2uzpc_: 2uzp C: [168261]
        automated match to d1dsya_
        complexed with ca, co, edo, plp, so4
    3. Domain for 4dnl:
  2. 2038253Norway rat (Rattus norvegicus) [TaxId:10116] [186999] (9 PDB entries)
    1. Domain for 2bwq:
    2. Domain for 2cm5:
    3. Domains for 2cm6:
      1. 2038259Domain d2cm6a_: 2cm6 A: [130614]
        automated match to d3rpba_
        complexed with ca, po4
      2. 2038260Domain d2cm6b_: 2cm6 B: [130615]
        automated match to d3rpba_
        complexed with ca, po4
    4. Domain for 2nce:
    5. Domains for 2yoa:
      1. 2038257Domain d2yoaa1: 2yoa A:271-418 [197125]
        Other proteins in same PDB: d2yoaa2
        automated match to d1uova_
        complexed with ca, scn, sep
      2. 2038258Domain d2yoab_: 2yoa B: [197129]
        Other proteins in same PDB: d2yoaa2
        automated match to d1uova_
        complexed with ca, scn, sep
    6. Domain for 4wee:
    7. Domains for 5ccj:
      1. 2038261Domain d5ccja_: 5ccj A: [275846]
        Other proteins in same PDB: d5ccjd2
        automated match to d2lhaa_
        complexed with gol, so4; mutant
      2. 2038262Domain d5ccjb_: 5ccj B: [275847]
        Other proteins in same PDB: d5ccjd2
        automated match to d2lhaa_
        complexed with gol, so4; mutant
      3. 2038263Domain d5ccjc_: 5ccj C: [275848]
        Other proteins in same PDB: d5ccjd2
        automated match to d2lhaa_
        complexed with gol, so4; mutant
      4. 2038264Domain d5ccjd1: 5ccj D:271-421 [275849]
        Other proteins in same PDB: d5ccjd2
        automated match to d2lhaa_
        complexed with gol, so4; mutant
    8. Domains for 5lo8:
      1. 2292322Domain d5lo8a_: 5lo8 A: [335623]
        automated match to d3rpba_
        complexed with ca, gol, pio, so4
      2. 2292446Domain d5lo8b_: 5lo8 B: [335747]
        automated match to d3rpba_
        complexed with ca, gol, pio, so4
    9. Domains for 5low:
      1. 2292329Domain d5lowj_: 5low J: [335630]
        Other proteins in same PDB: d5lowd1, d5lowd2, d5lowe_, d5lowf_, d5lowg1, d5lowg2, d5lowk1, d5lowk2, d5lowl_, d5lowm_, d5lown1, d5lown2
        automated match to d3rpba_
        complexed with ca, gol
      2. 2292336Domain d5lowi_: 5low I: [335637]
        Other proteins in same PDB: d5lowd1, d5lowd2, d5lowe_, d5lowf_, d5lowg1, d5lowg2, d5lowk1, d5lowk2, d5lowl_, d5lowm_, d5lown1, d5lown2
        automated match to d3rpba_
        complexed with ca, gol
      3. 2292403Domain d5lowh_: 5low H: [335704]
        Other proteins in same PDB: d5lowd1, d5lowd2, d5lowe_, d5lowf_, d5lowg1, d5lowg2, d5lowk1, d5lowk2, d5lowl_, d5lowm_, d5lown1, d5lown2
        automated match to d3rpba_
        complexed with ca, gol
      4. 2292404Domain d5lowa_: 5low A: [335705]
        Other proteins in same PDB: d5lowd1, d5lowd2, d5lowe_, d5lowf_, d5lowg1, d5lowg2, d5lowk1, d5lowk2, d5lowl_, d5lowm_, d5lown1, d5lown2
        automated match to d3rpba_
        complexed with ca, gol
      5. 2292430Domain d5lowc_: 5low C: [335731]
        Other proteins in same PDB: d5lowd1, d5lowd2, d5lowe_, d5lowf_, d5lowg1, d5lowg2, d5lowk1, d5lowk2, d5lowl_, d5lowm_, d5lown1, d5lown2
        automated match to d3rpba_
        complexed with ca, gol
      6. 2292510Domain d5lowb_: 5low B: [335811]
        Other proteins in same PDB: d5lowd1, d5lowd2, d5lowe_, d5lowf_, d5lowg1, d5lowg2, d5lowk1, d5lowk2, d5lowl_, d5lowm_, d5lown1, d5lown2
        automated match to d3rpba_
        complexed with ca, gol
  3. 2292111Mus musculus [TaxId:10090] [335412] (1 PDB entry)

More info for Protein automated matches from b.7.1.2: Synaptotagmin-like (S variant)

Timeline for Protein automated matches from b.7.1.2: Synaptotagmin-like (S variant):