SCOPe Funding Alert: SCOPe support from the NIH ended in April 2016. John-Marc Chandonia is the primary maintainer and has continued to develop SCOPe using vacation time. Three proposals to the NIH for continued funding have been unsuccessful. If our current NIH proposal is not funded, SCOPe will shut down permanently in Summer 2017 as Dr. Chandonia will need to seek a new position.

Lineage for Protein: automated matches

  1. Root: SCOPe 2.06
  2. 2152203Class d: Alpha and beta proteins (a+b) [53931] (385 folds)
  3. 2158219Fold d.15: beta-Grasp (ubiquitin-like) [54235] (14 superfamilies)
    core: beta(2)-alpha-beta(2); mixed beta-sheet 2143
  4. 2159798Superfamily d.15.4: 2Fe-2S ferredoxin-like [54292] (3 families) (S)
  5. 2159799Family d.15.4.1: 2Fe-2S ferredoxin-related [54293] (4 protein domains)
  6. 2159928Protein automated matches [190231] (9 species)
    not a true protein

Species:

  1. 2159929Anabaena sp. [311173] (2 PDB entries)
    1. Domain for 1qod:
    2. Domain for 1qoe:
  2. 2159932Aphanothece sacrum [TaxId:1122] [189862] (1 PDB entry)
  3. 2159937Cow (Bos taurus) [TaxId:9913] [186995] (1 PDB entry)
  4. 2159940Cyanidioschyzon merolae [TaxId:45157] [189509] (2 PDB entries)
    1. Domains for 3ab5:
      1. 2159942Domain d3ab5a_: 3ab5 A: [171912]
        automated match to d4fxca_
        complexed with fes
      2. 2159943Domain d3ab5b_: 3ab5 B: [171913]
        automated match to d4fxca_
        complexed with fes
    2. Domain for 3wcq:
  5. 2159944Human (Homo sapiens) [TaxId:9606] [189528] (5 PDB entries)
    1. Domains for 3n9y:
      1. 2159947Domain d3n9yc_: 3n9y C: [182107]
        Other proteins in same PDB: d3n9ya_, d3n9yb_
        automated match to d1e6eb_
        complexed with clr, fes, hem
      2. 2159948Domain d3n9yd_: 3n9y D: [182108]
        Other proteins in same PDB: d3n9ya_, d3n9yb_
        automated match to d1e6eb_
        complexed with clr, fes, hem
    2. Domains for 3n9z:
      1. 2159949Domain d3n9zc_: 3n9z C: [182109]
        Other proteins in same PDB: d3n9za_, d3n9zb_
        automated match to d1e6eb_
        complexed with fes, hc9, hem
      2. 2159950Domain d3n9zd_: 3n9z D: [182110]
        Other proteins in same PDB: d3n9za_, d3n9zb_
        automated match to d1e6eb_
        complexed with fes, hc9, hem
    3. Domains for 3na0:
      1. 2159959Domain d3na0c_: 3na0 C: [232993]
        Other proteins in same PDB: d3na0a_, d3na0b_
        automated match to d3n9yc_
        complexed with 2dc, fes, hem
      2. 2159960Domain d3na0d_: 3na0 D: [232994]
        Other proteins in same PDB: d3na0a_, d3na0b_
        automated match to d3n9yc_
        complexed with 2dc, fes, hem
    4. Domains for 3na1:
      1. 2159945Domain d3na1c_: 3na1 C: [182111]
        Other proteins in same PDB: d3na1a_, d3na1b_
        automated match to d1e6eb_
        complexed with fes, hcd, hem
      2. 2159946Domain d3na1d_: 3na1 D: [182112]
        Other proteins in same PDB: d3na1a_, d3na1b_
        automated match to d1e6eb_
        complexed with fes, hcd, hem
    5. Domains for 3p1m:
      1. 2159951Domain d3p1ma1: 3p1m A:66-184 [183454]
        Other proteins in same PDB: d3p1ma2, d3p1mb2, d3p1mc2, d3p1md2, d3p1me2, d3p1mf2, d3p1mg2, d3p1mh2
        automated match to d1e6eb_
        complexed with fes, flc, gol, k
      2. 2159952Domain d3p1mb1: 3p1m B:66-184 [183455]
        Other proteins in same PDB: d3p1ma2, d3p1mb2, d3p1mc2, d3p1md2, d3p1me2, d3p1mf2, d3p1mg2, d3p1mh2
        automated match to d1e6eb_
        complexed with fes, flc, gol, k
      3. 2159953Domain d3p1mc1: 3p1m C:65-184 [183456]
        Other proteins in same PDB: d3p1ma2, d3p1mb2, d3p1mc2, d3p1md2, d3p1me2, d3p1mf2, d3p1mg2, d3p1mh2
        automated match to d1e6eb_
        complexed with fes, flc, gol, k
      4. 2159954Domain d3p1md1: 3p1m D:65-184 [183457]
        Other proteins in same PDB: d3p1ma2, d3p1mb2, d3p1mc2, d3p1md2, d3p1me2, d3p1mf2, d3p1mg2, d3p1mh2
        automated match to d1e6eb_
        complexed with fes, flc, gol, k
      5. 2159955Domain d3p1me1: 3p1m E:65-184 [183458]
        Other proteins in same PDB: d3p1ma2, d3p1mb2, d3p1mc2, d3p1md2, d3p1me2, d3p1mf2, d3p1mg2, d3p1mh2
        automated match to d1e6eb_
        complexed with fes, flc, gol, k
      6. 2159956Domain d3p1mf1: 3p1m F:64-184 [183459]
        Other proteins in same PDB: d3p1ma2, d3p1mb2, d3p1mc2, d3p1md2, d3p1me2, d3p1mf2, d3p1mg2, d3p1mh2
        automated match to d1e6eb_
        complexed with fes, flc, gol, k
      7. 2159957Domain d3p1mg1: 3p1m G:64-184 [183460]
        Other proteins in same PDB: d3p1ma2, d3p1mb2, d3p1mc2, d3p1md2, d3p1me2, d3p1mf2, d3p1mg2, d3p1mh2
        automated match to d1e6eb_
        complexed with fes, flc, gol, k
      8. 2159958Domain d3p1mh1: 3p1m H:64-184 [183461]
        Other proteins in same PDB: d3p1ma2, d3p1mb2, d3p1mc2, d3p1md2, d3p1me2, d3p1mf2, d3p1mg2, d3p1mh2
        automated match to d1e6eb_
        complexed with fes, flc, gol, k
  6. 2159961Leptolyngbya boryana [TaxId:1184] [195189] (1 PDB entry)
  7. 2159964Mastigocladus laminosus [TaxId:83541] [188017] (2 PDB entries)
    1. Domains for 1rfk:
      1. 2159965Domain d1rfka_: 1rfk A: [161682]
        automated match to d1j7aa_
        complexed with fes
      2. 2159966Domain d1rfkb_: 1rfk B: [161683]
        automated match to d1j7aa_
        complexed with fes
    2. Domains for 3p63:
      1. 2159967Domain d3p63a_: 3p63 A: [183547]
        automated match to d1czpa_
        complexed with fes
      2. 2159968Domain d3p63b_: 3p63 B: [183548]
        automated match to d1czpa_
        complexed with fes
  8. 2159969Synechocystis sp. [TaxId:1148] [255333] (1 PDB entry)
  9. 2285886Zea mays [TaxId:4577] [329187] (2 PDB entries)
    1. Domains for 5h57:
      1. 2285887Domain d5h57e_: 5h57 E: [329188]
        automated match to d2pvgc_
        complexed with fes
      2. 2285893Domain d5h57b_: 5h57 B: [329194]
        automated match to d2pvgc_
        complexed with fes
      3. 2285897Domain d5h57a_: 5h57 A: [329198]
        automated match to d2pvgc_
        complexed with fes
      4. 2285901Domain d5h57d_: 5h57 D: [329202]
        automated match to d2pvgc_
        complexed with fes
      5. 2285904Domain d5h57c_: 5h57 C: [329205]
        automated match to d2pvgc_
        complexed with fes
      6. 2285907Domain d5h57f_: 5h57 F: [329208]
        automated match to d2pvgc_
        complexed with fes
    2. Domain for 5h5j:

More info for Protein automated matches from d.15.4.1: 2Fe-2S ferredoxin-related

Timeline for Protein automated matches from d.15.4.1: 2Fe-2S ferredoxin-related: