Species:

1. Blood fluke (Schistosoma mansoni) [TaxId:6183] [189710] (4 PDB entries)

   1. Domain for 3qsd:

      • Domain d3qsda_: 3qsd A: [184608] automated match to d1qdqa_ complexed with 074, act, peg

   2. Domain for 3s3q:

      • Domain d3s3qa_: 3s3q A: [185256] automated match to d1qdqa_ complexed with act, c1p

   3. Domains for 3s3r:

      1. Domain d3s3ra_: 3s3r A: [185257] automated match to d1qdqa_ complexed with 0iw

      2. Domain d3s3rb_: 3s3r B: [185258] automated match to d1qdqa_ complexed with 0iw

      3. Domain d3s3rc_: 3s3r C: [185259] automated match to d1qdqa_ complexed with 0iw

   4. Domain for 4i07:

      • Domain d4i07a_: 4i07 A: [236539] automated match to d3s3qa_ complexed with act, cl

2. Crocus sativus [TaxId:82528] [189777] (1 PDB entry)

   • Domain for 3u8e:

     • Domain d3u8ea_: 3u8e A: [186108] automated match to d1s4va_ complexed with gol, na, so4

3. Dionaea muscipula [TaxId:4362] [279768] (1 PDB entry)

   • Domain for 5a24:

     • Domain d5a24a_: 5a24 A: [279769] automated match to d1s4va_ complexed with e64, po4

4. Fasciola hepatica [TaxId:6192] [188299] (1 PDB entry)

   • Domain for 2o6x:

     • Domain d2o6xa_: 2o6x A: [166568] automated match to d1by8a_

5. Ficus carica [TaxId:3494] [315499] (5 PDB entries)

   1. Domains for 4yyq:

      1. Domain d4yyqa_: 4yyq A: [315591] automated match to d1cqda_

      2. Domain d4yyqb_: 4yyq B: [315512] automated match to d1cqda_

   2. Domain for 4yyr:

      • Domain d4yyra_: 4yyr A: [315575] automated match to d1s4va_ complexed with so4

   3. Domain for 4yyu:

      • Domain d4yyua_: 4yyu A: [315549] automated match to d1s4vb_ complexed with mes, so4

   4. Domain for 4yyv:

      • Domain d4yyva_: 4yyv A: [315500] automated match to d1s4vb_ complexed with 16p, so4

   5. Domain for 4yyw:

      • Domain d4yywa_: 4yyw A: [315592] automated match to d1iwda_ complexed with so4

6. Human (Homo sapiens) [TaxId:9606] [187072] (42 PDB entries)

   1. Domain for 1dkv:

      • Domain d1dkva4: 1dkv A:2-355 [302338] Other proteins in same PDB: d1dkva5, d1dkva6, d1dkvb_ automated match to d1qxpa4

   2. Domain for 2etl:

      • Domain d2etlb_: 2etl B: [132362] Other proteins in same PDB: d2etla1 automated match to d1uch__ complexed with cl

   3. Domain for 2nqd:

      • Domain d2nqdb_: 2nqd B: [230974] Other proteins in same PDB: d2nqda_ automated match to d3of8a_ complexed with cl, na

   4. Domain for 2xu3:

      • Domain d2xu3a_: 2xu3 A: [207338] automated match to d3hd3b_ complexed with btb, cl, xu3

   5. Domain for 2xu4:

      • Domain d2xu4a_: 2xu4 A: [207339] automated match to d3hd3b_ complexed with djt, gol

   6. Domain for 2xu5:

      • Domain d2xu5a_: 2xu5 A: [207340] automated match to d3hd3b_ complexed with flc, gol, xu5

   7. Domains for 2y5b:

      1. Domain d2y5ba_: 2y5b A: [170606] Other proteins in same PDB: d2y5bb1, d2y5bb2, d2y5bf1, d2y5bf2 automated match to d2ibia1 complexed with so4, zn

      2. Domain d2y5be_: 2y5b E: [170607] Other proteins in same PDB: d2y5bb1, d2y5bb2, d2y5bf1, d2y5bf2 automated match to d2ibia1 complexed with so4, zn

   8. Domain for 2yj2:

      • Domain d2yj2a_: 2yj2 A: [207624] automated match to d3hd3b_ complexed with gol, yj2

   9. Domain for 2yj8:

      • Domain d2yj8a_: 2yj8 A: [207625] automated match to d3hd3b_ complexed with gol, yj8

   10. Domain for 2yj9:

       • Domain d2yj9a_: 2yj9 A: [207626] automated match to d3hd3b_ complexed with gol, yj9

   11. Domain for 2yjb:

       • Domain d2yjba_: 2yjb A: [207627] automated match to d3hd3b_ complexed with gol, yj9

   12. Domain for 2yjc:

       • Domain d2yjca_: 2yjc A: [207628] automated match to d3hd3b_ complexed with 424

   13. Domain for 2zfy:

       • Domain d2zfya_: 2zfy A: [171201] automated match to d1tffa_

   14. Domain for 3a7s:

       • Domain d3a7sa_: 3a7s A: [171848] automated match to d1ucha_ complexed with cl

   15. Domains for 3bc3:

       1. Domain d3bc3a_: 3bc3 A: [231838] automated match to d2xu3a_ complexed with opt

       2. Domain d3bc3b_: 3bc3 B: [231837] automated match to d2xu3a_ complexed with opt

   16. Domains for 3h89:

       1. Domain d3h89a_: 3h89 A: [232420] automated match to d2xu3a_ complexed with nsx

       2. Domain d3h89b_: 3h89 B: [232422] automated match to d2xu3a_ complexed with nsx

       3. Domain d3h89c_: 3h89 C: [232424] automated match to d2xu3a_ complexed with nsx

       4. Domain d3h89d_: 3h89 D: [232425] automated match to d2xu3a_ complexed with nsx

       5. Domain d3h89e_: 3h89 E: [232421] automated match to d2xu3a_ complexed with nsx

       6. Domain d3h89f_: 3h89 F: [232423] automated match to d2xu3a_ complexed with nsx

   17. Domains for 3h8b:

       1. Domain d3h8ba_: 3h8b A: [232426] automated match to d2xu3a_ complexed with nsy

       2. Domain d3h8bb_: 3h8b B: [232427] automated match to d2xu3a_ complexed with nsy

       3. Domain d3h8bc_: 3h8b C: [232429] automated match to d2xu3a_ complexed with nsy

       4. Domain d3h8bd_: 3h8b D: [232428] automated match to d2xu3a_ complexed with nsy

       5. Domain d3h8be_: 3h8b E: [232431] automated match to d2xu3a_ complexed with nsy

       6. Domain d3h8bf_: 3h8b F: [232430] automated match to d2xu3a_ complexed with nsy

   18. Domains for 3h8c:

       1. Domain d3h8ca_: 3h8c A: [232432] automated match to d2xu3a_ complexed with nsz

       2. Domain d3h8cb_: 3h8c B: [232433] automated match to d2xu3a_ complexed with nsz

   19. Domains for 3i3t:

       1. Domain d3i3ta_: 3i3t A: [178066] Other proteins in same PDB: d3i3tb_, d3i3td_, d3i3tf_, d3i3th_ automated match to d2ibia1 complexed with neh, zn

       2. Domain d3i3tc_: 3i3t C: [178068] Other proteins in same PDB: d3i3tb_, d3i3td_, d3i3tf_, d3i3th_ automated match to d2ibia1 complexed with neh, zn

       3. Domain d3i3te_: 3i3t E: [178070] Other proteins in same PDB: d3i3tb_, d3i3td_, d3i3tf_, d3i3th_ automated match to d2ibia1 complexed with neh, zn

       4. Domain d3i3tg_: 3i3t G: [178072] Other proteins in same PDB: d3i3tb_, d3i3td_, d3i3tf_, d3i3th_ automated match to d2ibia1 complexed with neh, zn

   20. Domains for 3iv2:

       1. Domain d3iv2a_: 3iv2 A: [232636] automated match to d2xu4a_ complexed with gol, na, nag, so4; mutant

       2. Domain d3iv2b_: 3iv2 B: [232635] automated match to d2xu4a_ complexed with gol, na, nag, so4; mutant

   21. Domains for 3mtn:

       1. Domain d3mtna_: 3mtn A: [181546] Other proteins in same PDB: d3mtnb1, d3mtnb2, d3mtnd1, d3mtnd2 automated match to d2ibia1 complexed with cl, gol, zn

       2. Domain d3mtnc_: 3mtn C: [181548] Other proteins in same PDB: d3mtnb1, d3mtnb2, d3mtnd1, d3mtnd2 automated match to d2ibia1 complexed with cl, gol, zn

   22. Domain for 3of8:

       • Domain d3of8a_: 3of8 A: [214334] automated match to d3f75a_ complexed with i0y

   23. Domain for 3of9:

       • Domain d3of9a_: 3of9 A: [214335] automated match to d3f75a_ complexed with i0x

   24. Domains for 3rii:

       1. Domain d3riia_: 3rii A: [184984] automated match to d1ucha_ complexed with edo, mg

       2. Domain d3riib_: 3rii B: [184985] automated match to d1ucha_ complexed with edo, mg

   25. Domains for 3ris:

       1. Domain d3risa_: 3ris A: [184990] automated match to d1ucha_ complexed with gol, so4

       2. Domain d3risb_: 3ris B: [184991] automated match to d1ucha_ complexed with gol, so4

       3. Domain d3risc_: 3ris C: [184992] automated match to d1ucha_ complexed with gol, so4

       4. Domain d3risd_: 3ris D: [184993] automated match to d1ucha_ complexed with gol, so4

   26. Domains for 3sqa:

       1. Domain d3sqaa_: 3sqa A: [306509] automated match to d4i6na_ complexed with ca

       2. Domain d3sqab_: 3sqa B: [306510] automated match to d4i6na_ complexed with ca

   27. Domains for 3tb3:

       1. Domain d3tb3a_: 3tb3 A: [195998] automated match to d3riia_ complexed with ca

       2. Domain d3tb3b_: 3tb3 B: [195997] automated match to d3riia_ complexed with ca

   28. Domains for 3von:

       1. Domain d3vona_: 3von A: [250625] Other proteins in same PDB: d3vonb_, d3vonc_, d3vond_, d3vone_, d3vonf_, d3vong_, d3voni_, d3vonj_, d3vonk_, d3vonl_, d3vonm_, d3vonn_, d3vonp_, d3vonq_, d3vonr_, d3vons_, d3vont_, d3vonu_, d3vonw_, d3vonx_, d3vony_, d3vonz_ automated match to d4i6la_

       2. Domain d3vonh_: 3von H: [250632] Other proteins in same PDB: d3vonb_, d3vonc_, d3vond_, d3vone_, d3vonf_, d3vong_, d3voni_, d3vonj_, d3vonk_, d3vonl_, d3vonm_, d3vonn_, d3vonp_, d3vonq_, d3vonr_, d3vons_, d3vont_, d3vonu_, d3vonw_, d3vonx_, d3vony_, d3vonz_ automated match to d4i6la_

       3. Domain d3vono_: 3von O: [250639] Other proteins in same PDB: d3vonb_, d3vonc_, d3vond_, d3vone_, d3vonf_, d3vong_, d3voni_, d3vonj_, d3vonk_, d3vonl_, d3vonm_, d3vonn_, d3vonp_, d3vonq_, d3vonr_, d3vons_, d3vont_, d3vonu_, d3vonw_, d3vonx_, d3vony_, d3vonz_ automated match to d4i6la_

       4. Domain d3vonv_: 3von V: [250646] Other proteins in same PDB: d3vonb_, d3vonc_, d3vond_, d3vone_, d3vonf_, d3vong_, d3voni_, d3vonj_, d3vonk_, d3vonl_, d3vonm_, d3vonn_, d3vonp_, d3vonq_, d3vonr_, d3vons_, d3vont_, d3vonu_, d3vonw_, d3vonx_, d3vony_, d3vonz_ automated match to d4i6la_

   29. Domain for 4axl:

       • Domain d4axla_: 4axl A: [219197] automated match to d3hd3b_ complexed with act, gol, zn

   30. Domains for 4axm:

       1. Domain d4axma_: 4axm A: [234106] automated match to d2xu3a_ complexed with gol, v65

       2. Domain d4axmb_: 4axm B: [234109] automated match to d2xu3a_ complexed with gol, v65

       3. Domain d4axmf_: 4axm F: [234107] automated match to d2xu3a_ complexed with gol, v65

       4. Domain d4axmi_: 4axm I: [234110] automated match to d2xu3a_ complexed with gol, v65

       5. Domain d4axml_: 4axm L: [234108] automated match to d2xu3a_ complexed with gol, v65

       6. Domain d4axmo_: 4axm O: [234111] automated match to d2xu3a_ complexed with gol, v65

   31. Domain for 4i6l:

       • Domain d4i6la1: 4i6l A:45-271 [194133] Other proteins in same PDB: d4i6la2, d4i6lb1, d4i6lb2 automated match to d2zfya_

   32. Domain for 4leg:

       • Domain d4lega_: 4leg A: [236776] automated match to d3of8a_ complexed with 1xf, act, gol, so4; mutant

   33. Domain for 5f02:

       • Domain d5f02a_: 5f02 A: [313975] automated match to d2xu3a_ complexed with 5t9, gol

   34. Domain for 5j94:

       • Domain d5j94a_: 5j94 A: [316133] automated match to d4lega_ complexed with 1xf, so4; mutant

   35. Domains for 5ja7:

       1. Domain d5ja7a_: 5ja7 A: [326662] automated match to d4lega_ complexed with 6hm, act, gol, so4; mutant

       2. Domain d5ja7b_: 5ja7 B: [326729] automated match to d4lega_ complexed with 6hm, act, gol, so4; mutant

   36. Domain for 5k1c:

       • Domain d5k1ca_: 5k1c A: [319785] automated match to d3v6ca_ complexed with po4, tam, zn

   37. Domain for 5l8w:

       • Domain d5l8wa_: 5l8w A: [323416] Other proteins in same PDB: d5l8wc_ automated match to d3v6ca_ complexed with aye, gol, zn

   38. Domain for 5mae:

       • Domain d5maea_: 5mae A: [328155] automated match to d3of9a_ complexed with 7kn, edo

   39. Domain for 5maj:

       • Domain d5maja_: 5maj A: [328098] automated match to d3of9a_ complexed with 7kh, edo

   40. Domain for 5mqy:

       • Domain d5mqya_: 5mqy A: [332323] automated match to d3of9a_ complexed with edo, gh4

   41. Domain for 5ohk:

       • Domain d5ohka_: 5ohk A: [339133] Other proteins in same PDB: d5ohkb_ automated match to d2ibia1 complexed with aye, zn

   42. Domain for 5ohp:

       • Domain d5ohpa_: 5ohp A: [339288] Other proteins in same PDB: d5ohpb_, d5ohpc_ automated match to d2ibia1 complexed with zn

7. Malaria parasite (Plasmodium falciparum) [TaxId:5833] [189172] (2 PDB entries)

   1. Domains for 2wdt:

      1. Domain d2wdta_: 2wdt A: [169255] Other proteins in same PDB: d2wdtb_, d2wdtd_ automated match to d1ucha_ complexed with cl

      2. Domain d2wdtc_: 2wdt C: [169257] Other proteins in same PDB: d2wdtb_, d2wdtd_ automated match to d1ucha_ complexed with cl

   2. Domains for 2we6:

      1. Domain d2we6a_: 2we6 A: [169270] automated match to d1ucha_

      2. Domain d2we6b_: 2we6 B: [169271] automated match to d1ucha_

8. Mus musculus [TaxId:10090] [318905] (2 PDB entries)

   1. Domains for 5cht:

      1. Domain d5chta1: 5cht A:46-367 [318906] Other proteins in same PDB: d5chta2 automated match to d2ibia1 complexed with zn

      2. Domain d5chtb_: 5cht B: [318978] Other proteins in same PDB: d5chta2 automated match to d2ibia1 complexed with zn

   2. Domains for 5chv:

      1. Domain d5chva_: 5chv A: [323272] Other proteins in same PDB: d5chvc1, d5chvc2, d5chvd1, d5chvd2 automated match to d2ibia1 complexed with cl, so4, zn

      2. Domain d5chvb_: 5chv B: [323278] Other proteins in same PDB: d5chvc1, d5chvc2, d5chvd1, d5chvd2 automated match to d2ibia1 complexed with cl, so4, zn

9. Mycobacterium abscessus [TaxId:561007] [228435] (1 PDB entry)

   • Domains for 4guz:

     1. Domain d4guza1: 4guz A:1-278 [228436] Other proteins in same PDB: d4guza2, d4guzb2, d4guzc2, d4guzd2 automated match to d1gx3a_

     2. Domain d4guzb1: 4guz B:1-278 [234538] Other proteins in same PDB: d4guza2, d4guzb2, d4guzc2, d4guzd2 automated match to d4guzd_

     3. Domain d4guzc1: 4guz C:1-278 [234539] Other proteins in same PDB: d4guza2, d4guzb2, d4guzc2, d4guzd2 automated match to d4guzd_

     4. Domain d4guzd1: 4guz D:1-278 [228437] Other proteins in same PDB: d4guza2, d4guzb2, d4guzc2, d4guzd2 automated match to d1gx3a_

10. Nematode (Caenorhabditis elegans) [TaxId:6239] [256233] (2 PDB entries)

    1. Domain for 4dhi:

       • Domain d4dhib_: 4dhi B: [240058] Other proteins in same PDB: d4dhid_ automated match to d4i6la_

    2. Domains for 4dhj:

       1. Domain d4dhja_: 4dhj A: [240059] Other proteins in same PDB: d4dhjb_, d4dhjc_, d4dhjd_, d4dhjf_, d4dhjg_, d4dhjh_, d4dhjj_, d4dhjk_, d4dhjm_, d4dhjn_ automated match to d4i6la_

       2. Domain d4dhje_: 4dhj E: [240060] Other proteins in same PDB: d4dhjb_, d4dhjc_, d4dhjd_, d4dhjf_, d4dhjg_, d4dhjh_, d4dhjj_, d4dhjk_, d4dhjm_, d4dhjn_ automated match to d4i6la_

       3. Domain d4dhji_: 4dhj I: [240061] Other proteins in same PDB: d4dhjb_, d4dhjc_, d4dhjd_, d4dhjf_, d4dhjg_, d4dhjh_, d4dhjj_, d4dhjk_, d4dhjm_, d4dhjn_ automated match to d4i6la_

       4. Domain d4dhjl_: 4dhj L: [240062] Other proteins in same PDB: d4dhjb_, d4dhjc_, d4dhjd_, d4dhjf_, d4dhjg_, d4dhjh_, d4dhjj_, d4dhjk_, d4dhjm_, d4dhjn_ automated match to d4i6la_

11. Nocardia farcinica [TaxId:37329] [231965] (1 PDB entry)

    • Domains for 3d9w:

      1. Domain d3d9wa_: 3d9w A: [231966] automated match to d4guzd_

      2. Domain d3d9wb_: 3d9w B: [231968] automated match to d4guzd_

      3. Domain d3d9wc_: 3d9w C: [231967] automated match to d4guzd_

      4. Domain d3d9wd_: 3d9w D: [231969] automated match to d4guzd_

12. Pachyrhizus erosus [TaxId:109171] [225133] (1 PDB entry)

    • Domain for 2b1m:

      • Domain d2b1ma_: 2b1m A: [203539] automated match to d1s4vb_ complexed with peg, pg4

13. Polyporus squamosus [TaxId:5640] [233246] (2 PDB entries)

    1. Domains for 3phz:

       1. Domain d3phza2: 3phz A:149-286 [233249] Other proteins in same PDB: d3phza1, d3phzb1 automated match to d2ihoa2 complexed with sia

       2. Domain d3phzb2: 3phz B:149-286 [233248] Other proteins in same PDB: d3phza1, d3phzb1 automated match to d2ihoa2 complexed with sia

    2. Domains for 5mua:

       1. Domain d5muaa2: 5mua A:149-286 [336677] Other proteins in same PDB: d5muaa1, d5muab1 automated match to d3phza2 complexed with ca, dms, e64, gal

       2. Domain d5muab2: 5mua B:149-286 [336633] Other proteins in same PDB: d5muaa1, d5muab1 automated match to d3phza2 complexed with ca, dms, e64, gal

14. Rhizobium loti [TaxId:381] [186994] (1 PDB entry)

    • Domain for 2bsz:

      • Domain d2bszb_: 2bsz B: [129132] Other proteins in same PDB: d2bsza1 automated match to d1gx3a_

15. Toxoplasma gondii [TaxId:383379] [188681] (1 PDB entry)

    • Domain for 3f75:

      • Domain d3f75a_: 3f75 A: [175538] automated match to d1fh0a_ complexed with br, cl, edo

16. Trichinella spiralis [TaxId:6334] [197187] (1 PDB entry)

    • Domains for 4i6n:

      1. Domain d4i6na1: 4i6n A:2-225 [202577] Other proteins in same PDB: d4i6na2, d4i6nb_, d4i6nc2, d4i6nd_ automated match to d4i6nc_ complexed with dtt, gve, na

      2. Domain d4i6nc1: 4i6n C:2-224 [197188] Other proteins in same PDB: d4i6na2, d4i6nb_, d4i6nc2, d4i6nd_ automated match to d3risd_ complexed with dtt, gve, na

17. Trypanosoma brucei [TaxId:999953] [256293] (1 PDB entry)

    • Domain for 4hwy:

      • Domain d4hwya_: 4hwy A: [252534] automated match to d3pbha_

18. Trypanosoma congolense [TaxId:5692] [314470] (1 PDB entry)

    • Domains for 5fpw:

      1. Domain d5fpwa_: 5fpw A: [314471] automated match to d4hwya_

      2. Domain d5fpwb_: 5fpw B: [314479] automated match to d4hwya_

      3. Domain d5fpwc_: 5fpw C: [314594] automated match to d4hwya_

19. Trypanosome (Trypanosoma brucei) [TaxId:5691] [189337] (2 PDB entries)

    1. Domains for 3hhi:

       1. Domain d3hhia_: 3hhi A: [177576] automated match to d1pbha_ complexed with 074, gol, li, mg, trs

       2. Domain d3hhib_: 3hhi B: [177577] automated match to d1pbha_ complexed with 074, gol, li, mg, trs

    2. Domains for 3mor:

       1. Domain d3mora_: 3mor A: [181467] automated match to d1pbha_ complexed with cl, gol, na

       2. Domain d3morb_: 3mor B: [181468] automated match to d1pbha_ complexed with cl, gol, na

20. Yellow mealworm (Tenebrio molitor) [TaxId:7067] [189891] (2 PDB entries)

    1. Domains for 3qj3:

       1. Domain d3qj3a_: 3qj3 A: [184410] automated match to d7pcka_ complexed with act

       2. Domain d3qj3b_: 3qj3 B: [184411] automated match to d7pcka_ complexed with act

    2. Domain for 3qt4:

       • Domain d3qt4a_: 3qt4 A: [196002] automated match to d3qj3a_ complexed with pg4, pg6, po4

More info for Protein automated matches from d.3.1.0: automated matches

Timeline for Protein automated matches from d.3.1.0: automated matches:

• Protein automated matches from d.3.1.0: automated matches first appeared in SCOPe 2.01
  
• Protein automated matches from d.3.1.0: automated matches appears in SCOPe 2.05
  
• Protein automated matches from d.3.1.0: automated matches appears in SCOPe 2.07
  
• Protein automated matches from d.3.1.0: automated matches appears in the current release, SCOPe 2.08