Lineage for Protein: automated matches

  1. Root: SCOPe 2.03
  2. 1396887Class d: Alpha and beta proteins (a+b) [53931] (376 folds)
  3. 1398964Fold d.3: Cysteine proteinases [54000] (1 superfamily)
    consists of one alpha-helix and 4 strands of antiparallel beta-sheet and contains the catalytic triad Cys-His-Asn
  4. 1398965Superfamily d.3.1: Cysteine proteinases [54001] (23 families) (S)
    the constitute families differ by insertion into and circular permutation of the common catalytic core made of one alpha-helix and 3-strands of beta-sheet
  5. 1399697Family d.3.1.0: automated matches [191342] (1 protein)
    not a true family
  6. 1399698Protein automated matches [190230] (14 species)
    not a true protein

Species:

  1. 1399699Blood fluke (Schistosoma mansoni) [TaxId:6183] [189710] (4 PDB entries)
    1. Domain for 3qsd:
    2. Domain for 3s3q:
    3. Domains for 3s3r:
      1. 1399703Domain d3s3ra_: 3s3r A: [185257]
        automated match to d1qdqa_
        complexed with 0iw
      2. 1399704Domain d3s3rb_: 3s3r B: [185258]
        automated match to d1qdqa_
        complexed with 0iw
      3. 1399705Domain d3s3rc_: 3s3r C: [185259]
        automated match to d1qdqa_
        complexed with 0iw
    4. Domain for 4i07:
  2. 1399706Crocus sativus [TaxId:82528] [189777] (1 PDB entry)
  3. 1399708Fasciola hepatica [TaxId:6192] [188299] (1 PDB entry)
  4. 1399710Human (Homo sapiens) [TaxId:9606] [187072] (29 PDB entries)
    1. Domain for 2etl:
    2. Domain for 2nqd:
    3. Domain for 2xu3:
    4. Domain for 2xu4:
    5. Domain for 2xu5:
    6. Domains for 2y5b:
      1. 1399759Domain d2y5ba_: 2y5b A: [170606]
        automated match to d2ibia1
        complexed with so4, zn
      2. 1399760Domain d2y5be_: 2y5b E: [170607]
        automated match to d2ibia1
        complexed with so4, zn
    7. Domain for 2yj2:
    8. Domain for 2yj8:
    9. Domain for 2yj9:
    10. Domain for 2yjb:
    11. Domain for 2yjc:
    12. Domain for 2zfy:
    13. Domain for 3a7s:
    14. Domains for 3bc3:
      1. 1399729Domain d3bc3a_: 3bc3 A: [231838]
        automated match to d2xu3a_
        complexed with opt
      2. 1399730Domain d3bc3b_: 3bc3 B: [231837]
        automated match to d2xu3a_
        complexed with opt
    15. Domains for 3h89:
      1. 1399747Domain d3h89a_: 3h89 A: [232420]
        automated match to d2xu3a_
        complexed with nsx
      2. 1399748Domain d3h89b_: 3h89 B: [232422]
        automated match to d2xu3a_
        complexed with nsx
      3. 1399749Domain d3h89c_: 3h89 C: [232424]
        automated match to d2xu3a_
        complexed with nsx
      4. 1399750Domain d3h89d_: 3h89 D: [232425]
        automated match to d2xu3a_
        complexed with nsx
      5. 1399751Domain d3h89e_: 3h89 E: [232421]
        automated match to d2xu3a_
        complexed with nsx
      6. 1399752Domain d3h89f_: 3h89 F: [232423]
        automated match to d2xu3a_
        complexed with nsx
    16. Domains for 3h8b:
      1. 1399723Domain d3h8ba_: 3h8b A: [232426]
        automated match to d2xu3a_
        complexed with nsy
      2. 1399724Domain d3h8bb_: 3h8b B: [232427]
        automated match to d2xu3a_
      3. 1399725Domain d3h8bc_: 3h8b C: [232429]
        automated match to d2xu3a_
        complexed with nsy
      4. 1399726Domain d3h8bd_: 3h8b D: [232428]
        automated match to d2xu3a_
      5. 1399727Domain d3h8be_: 3h8b E: [232431]
        automated match to d2xu3a_
      6. 1399728Domain d3h8bf_: 3h8b F: [232430]
        automated match to d2xu3a_
        complexed with nsy
    17. Domains for 3h8c:
      1. 1399745Domain d3h8ca_: 3h8c A: [232432]
        automated match to d2xu3a_
        complexed with nsz
      2. 1399746Domain d3h8cb_: 3h8c B: [232433]
        automated match to d2xu3a_
    18. Domains for 3i3t:
      1. 1399741Domain d3i3ta_: 3i3t A: [178066]
        Other proteins in same PDB: d3i3tb_, d3i3td_, d3i3tf_, d3i3th_
        automated match to d2ibia1
        complexed with neh, zn
      2. 1399742Domain d3i3tc_: 3i3t C: [178068]
        Other proteins in same PDB: d3i3tb_, d3i3td_, d3i3tf_, d3i3th_
        automated match to d2ibia1
        complexed with neh, zn
      3. 1399743Domain d3i3te_: 3i3t E: [178070]
        Other proteins in same PDB: d3i3tb_, d3i3td_, d3i3tf_, d3i3th_
        automated match to d2ibia1
        complexed with neh, zn
      4. 1399744Domain d3i3tg_: 3i3t G: [178072]
        Other proteins in same PDB: d3i3tb_, d3i3td_, d3i3tf_, d3i3th_
        automated match to d2ibia1
        complexed with neh, zn
    19. Domains for 3iv2:
      1. 1399732Domain d3iv2a_: 3iv2 A: [232636]
        automated match to d2xu4a_
        complexed with gol, na, nag, so4; mutant
      2. 1399733Domain d3iv2b_: 3iv2 B: [232635]
        automated match to d2xu4a_
        complexed with gol, na, nag, so4; mutant
    20. Domains for 3mtn:
      1. 1399761Domain d3mtna_: 3mtn A: [181546]
        Other proteins in same PDB: d3mtnb_, d3mtnd_
        automated match to d2ibia1
        complexed with cl, gol, zn
      2. 1399762Domain d3mtnc_: 3mtn C: [181548]
        Other proteins in same PDB: d3mtnb_, d3mtnd_
        automated match to d2ibia1
        complexed with cl, gol, zn
    21. Domain for 3of8:
    22. Domain for 3of9:
    23. Domains for 3rii:
      1. 1399735Domain d3riia_: 3rii A: [184984]
        automated match to d1ucha_
        complexed with edo, mg
      2. 1399736Domain d3riib_: 3rii B: [184985]
        automated match to d1ucha_
        complexed with edo, mg
    24. Domains for 3ris:
      1. 1399763Domain d3risa_: 3ris A: [184990]
        automated match to d1ucha_
        complexed with gol, so4
      2. 1399764Domain d3risb_: 3ris B: [184991]
        automated match to d1ucha_
        complexed with gol, so4
      3. 1399765Domain d3risc_: 3ris C: [184992]
        automated match to d1ucha_
        complexed with gol, so4
      4. 1399766Domain d3risd_: 3ris D: [184993]
        automated match to d1ucha_
        complexed with gol, so4
    25. Domains for 3tb3:
      1. 1399737Domain d3tb3a_: 3tb3 A: [195998]
        automated match to d3riia_
        complexed with ca
      2. 1399738Domain d3tb3b_: 3tb3 B: [195997]
        automated match to d3riia_
        complexed with ca
    26. Domain for 4axl:
    27. Domains for 4axm:
      1. 1399753Domain d4axma_: 4axm A: [234106]
        automated match to d2xu3a_
        complexed with gol, v65
      2. 1399754Domain d4axmb_: 4axm B: [234109]
        automated match to d2xu3a_
        complexed with gol, v65
      3. 1399755Domain d4axmf_: 4axm F: [234107]
        automated match to d2xu3a_
        complexed with gol, v65
      4. 1399756Domain d4axmi_: 4axm I: [234110]
        automated match to d2xu3a_
        complexed with gol, v65
      5. 1399757Domain d4axml_: 4axm L: [234108]
        automated match to d2xu3a_
        complexed with gol, v65
      6. 1399758Domain d4axmo_: 4axm O: [234111]
        automated match to d2xu3a_
        complexed with gol, v65
    28. Domain for 4i6l:
    29. Domain for 4leg:
  5. 1399768Malaria parasite (Plasmodium falciparum) [TaxId:5833] [189172] (2 PDB entries)
    1. Domains for 2wdt:
      1. 1399769Domain d2wdta_: 2wdt A: [169255]
        Other proteins in same PDB: d2wdtb_, d2wdtd_
        automated match to d1ucha_
        complexed with cl
      2. 1399770Domain d2wdtc_: 2wdt C: [169257]
        Other proteins in same PDB: d2wdtb_, d2wdtd_
        automated match to d1ucha_
        complexed with cl
    2. Domains for 2we6:
      1. 1399771Domain d2we6a_: 2we6 A: [169270]
        automated match to d1ucha_
      2. 1399772Domain d2we6b_: 2we6 B: [169271]
        automated match to d1ucha_
  6. 1399773Mycobacterium abscessus [TaxId:561007] [228435] (1 PDB entry)
  7. Nocardia farcinica [TaxId:37329] [231965] (1 PDB entry)
  8. 1399783Pachyrhizus erosus [TaxId:109171] [225133] (1 PDB entry)
  9. 1399785Polyporus squamosus [TaxId:5640] [233246] (1 PDB entry)
  10. 1399788Rhizobium loti [TaxId:381] [186994] (1 PDB entry)
  11. 1399790Toxoplasma gondii [TaxId:383379] [188681] (1 PDB entry)
  12. 1399792Trichinella spiralis [TaxId:6334] [197187] (1 PDB entry)
  13. 1399795Trypanosome (Trypanosoma brucei) [TaxId:5691] [189337] (2 PDB entries)
    1. Domains for 3hhi:
      1. 1399796Domain d3hhia_: 3hhi A: [177576]
        automated match to d1pbha_
        complexed with 074, gol, li, mg, trs
      2. 1399797Domain d3hhib_: 3hhi B: [177577]
        automated match to d1pbha_
        complexed with 074, gol, li, mg, trs
    2. Domains for 3mor:
      1. 1399798Domain d3mora_: 3mor A: [181467]
        automated match to d1pbha_
        complexed with cl, gol, na
      2. 1399799Domain d3morb_: 3mor B: [181468]
        automated match to d1pbha_
        complexed with cl, gol, na
  14. 1399800Yellow mealworm (Tenebrio molitor) [TaxId:7067] [189891] (2 PDB entries)
    1. Domains for 3qj3:
      1. 1399801Domain d3qj3a_: 3qj3 A: [184410]
        automated match to d7pcka_
        complexed with act
      2. 1399802Domain d3qj3b_: 3qj3 B: [184411]
        automated match to d7pcka_
        complexed with act
    2. Domain for 3qt4:

More info for Protein automated matches from d.3.1.0: automated matches

Timeline for Protein automated matches from d.3.1.0: automated matches: