Lineage for Protein: automated matches

  1. Root: SCOPe 2.07
  2. 2494617Class d: Alpha and beta proteins (a+b) [53931] (388 folds)
  3. 2497139Fold d.3: Cysteine proteinases [54000] (1 superfamily)
    consists of one alpha-helix and 4 strands of antiparallel beta-sheet and contains the catalytic triad Cys-His-Asn
  4. 2497140Superfamily d.3.1: Cysteine proteinases [54001] (24 families) (S)
    the constitute families differ by insertion into and circular permutation of the common catalytic core made of one alpha-helix and 3-strands of beta-sheet
  5. 2498051Family d.3.1.0: automated matches [191342] (1 protein)
    not a true family
  6. 2498052Protein automated matches [190230] (21 species)
    not a true protein

Species:

  1. 2498053Blood fluke (Schistosoma mansoni) [TaxId:6183] [189710] (4 PDB entries)
    1. Domain for 3qsd:
    2. Domain for 3s3q:
    3. Domains for 3s3r:
      1. 2498057Domain d3s3ra_: 3s3r A: [185257]
        automated match to d1qdqa_
        complexed with 0iw
      2. 2498058Domain d3s3rb_: 3s3r B: [185258]
        automated match to d1qdqa_
        complexed with 0iw
      3. 2498059Domain d3s3rc_: 3s3r C: [185259]
        automated match to d1qdqa_
        complexed with 0iw
    4. Domain for 4i07:
  2. 2498060Crocus sativus [TaxId:82528] [189777] (1 PDB entry)
  3. 2498062Dionaea muscipula [TaxId:4362] [279768] (1 PDB entry)
  4. 2498064Fasciola hepatica [TaxId:6192] [188299] (1 PDB entry)
  5. 2498066Ficus carica [TaxId:3494] [315499] (5 PDB entries)
    1. Domains for 4yyq:
      1. 2498070Domain d4yyqa_: 4yyq A: [315591]
        automated match to d1cqda_
      2. 2498071Domain d4yyqb_: 4yyq B: [315512]
        automated match to d1cqda_
    2. Domain for 4yyr:
    3. Domain for 4yyu:
    4. Domain for 4yyv:
    5. Domain for 4yyw:
  6. 2498073Human (Homo sapiens) [TaxId:9606] [187072] (45 PDB entries)
    1. Domain for 1dkv:
    2. Domain for 2etl:
    3. Domain for 2nqd:
    4. Domain for 2xu3:
    5. Domain for 2xu4:
    6. Domain for 2xu5:
    7. Domains for 2y5b:
      1. 2498123Domain d2y5ba_: 2y5b A: [170606]
        Other proteins in same PDB: d2y5bb1, d2y5bb2, d2y5bf1, d2y5bf2
        automated match to d2ibia1
        complexed with so4, zn
      2. 2498124Domain d2y5be_: 2y5b E: [170607]
        Other proteins in same PDB: d2y5bb1, d2y5bb2, d2y5bf1, d2y5bf2
        automated match to d2ibia1
        complexed with so4, zn
    8. Domain for 2yj2:
    9. Domain for 2yj8:
    10. Domain for 2yj9:
    11. Domain for 2yjb:
    12. Domain for 2yjc:
    13. Domain for 2zfy:
    14. Domain for 3a7s:
    15. Domains for 3bc3:
      1. 2498127Domain d3bc3a_: 3bc3 A: [231838]
        automated match to d2xu3a_
        complexed with opt
      2. 2498128Domain d3bc3b_: 3bc3 B: [231837]
        automated match to d2xu3a_
        complexed with opt
    16. Domains for 3h89:
      1. 2498134Domain d3h89a_: 3h89 A: [232420]
        automated match to d2xu3a_
        complexed with nsx
      2. 2498135Domain d3h89b_: 3h89 B: [232422]
        automated match to d2xu3a_
        complexed with nsx
      3. 2498136Domain d3h89c_: 3h89 C: [232424]
        automated match to d2xu3a_
        complexed with nsx
      4. 2498137Domain d3h89d_: 3h89 D: [232425]
        automated match to d2xu3a_
        complexed with nsx
      5. 2498138Domain d3h89e_: 3h89 E: [232421]
        automated match to d2xu3a_
        complexed with nsx
      6. 2498139Domain d3h89f_: 3h89 F: [232423]
        automated match to d2xu3a_
        complexed with nsx
    17. Domains for 3h8b:
      1. 2498090Domain d3h8ba_: 3h8b A: [232426]
        automated match to d2xu3a_
        complexed with nsy
      2. 2498091Domain d3h8bb_: 3h8b B: [232427]
        automated match to d2xu3a_
        complexed with nsy
      3. 2498092Domain d3h8bc_: 3h8b C: [232429]
        automated match to d2xu3a_
        complexed with nsy
      4. 2498093Domain d3h8bd_: 3h8b D: [232428]
        automated match to d2xu3a_
        complexed with nsy
      5. 2498094Domain d3h8be_: 3h8b E: [232431]
        automated match to d2xu3a_
        complexed with nsy
      6. 2498095Domain d3h8bf_: 3h8b F: [232430]
        automated match to d2xu3a_
        complexed with nsy
    18. Domains for 3h8c:
      1. 2498141Domain d3h8ca_: 3h8c A: [232432]
        automated match to d2xu3a_
        complexed with nsz
      2. 2498142Domain d3h8cb_: 3h8c B: [232433]
        automated match to d2xu3a_
        complexed with nsz
    19. Domains for 3i3t:
      1. 2498109Domain d3i3ta_: 3i3t A: [178066]
        Other proteins in same PDB: d3i3tb_, d3i3td_, d3i3tf_, d3i3th_
        automated match to d2ibia1
        complexed with neh, zn
      2. 2498110Domain d3i3tc_: 3i3t C: [178068]
        Other proteins in same PDB: d3i3tb_, d3i3td_, d3i3tf_, d3i3th_
        automated match to d2ibia1
        complexed with neh, zn
      3. 2498111Domain d3i3te_: 3i3t E: [178070]
        Other proteins in same PDB: d3i3tb_, d3i3td_, d3i3tf_, d3i3th_
        automated match to d2ibia1
        complexed with neh, zn
      4. 2498112Domain d3i3tg_: 3i3t G: [178072]
        Other proteins in same PDB: d3i3tb_, d3i3td_, d3i3tf_, d3i3th_
        automated match to d2ibia1
        complexed with neh, zn
    20. Domains for 3iv2:
      1. 2498100Domain d3iv2a_: 3iv2 A: [232636]
        automated match to d2xu4a_
        complexed with gol, na, nag, so4; mutant
      2. 2498101Domain d3iv2b_: 3iv2 B: [232635]
        automated match to d2xu4a_
        complexed with gol, na, nag, so4; mutant
    21. Domains for 3mtn:
      1. 2498125Domain d3mtna_: 3mtn A: [181546]
        Other proteins in same PDB: d3mtnb1, d3mtnb2, d3mtnd1, d3mtnd2
        automated match to d2ibia1
        complexed with cl, gol, zn
      2. 2498126Domain d3mtnc_: 3mtn C: [181548]
        Other proteins in same PDB: d3mtnb1, d3mtnb2, d3mtnd1, d3mtnd2
        automated match to d2ibia1
        complexed with cl, gol, zn
    22. Domain for 3of8:
    23. Domain for 3of9:
    24. Domains for 3rii:
      1. 2498096Domain d3riia_: 3rii A: [184984]
        automated match to d1ucha_
        complexed with edo, mg
      2. 2498097Domain d3riib_: 3rii B: [184985]
        automated match to d1ucha_
        complexed with edo, mg
    25. Domains for 3ris:
      1. 2498119Domain d3risa_: 3ris A: [184990]
        automated match to d1ucha_
        complexed with gol, so4
      2. 2498120Domain d3risb_: 3ris B: [184991]
        automated match to d1ucha_
        complexed with gol, so4
      3. 2498121Domain d3risc_: 3ris C: [184992]
        automated match to d1ucha_
        complexed with gol, so4
      4. 2498122Domain d3risd_: 3ris D: [184993]
        automated match to d1ucha_
        complexed with gol, so4
    26. Domains for 3sqa:
      1. 2498106Domain d3sqaa_: 3sqa A: [306509]
        automated match to d4i6na_
        complexed with ca
      2. 2498107Domain d3sqab_: 3sqa B: [306510]
        automated match to d4i6na_
        complexed with ca
    27. Domains for 3tb3:
      1. 2498131Domain d3tb3a_: 3tb3 A: [195998]
        automated match to d3riia_
        complexed with ca
      2. 2498132Domain d3tb3b_: 3tb3 B: [195997]
        automated match to d3riia_
        complexed with ca
    28. Domains for 3von:
      1. 2498143Domain d3vona_: 3von A: [250625]
        Other proteins in same PDB: d3vonb_, d3vonc_, d3vond_, d3vone_, d3vonf_, d3vong_, d3voni_, d3vonj_, d3vonk_, d3vonl_, d3vonm_, d3vonn_, d3vonp_, d3vonq_, d3vonr_, d3vons_, d3vont_, d3vonu_, d3vonw_, d3vonx_, d3vony_, d3vonz_
        automated match to d4i6la_
      2. 2498144Domain d3vonh_: 3von H: [250632]
        Other proteins in same PDB: d3vonb_, d3vonc_, d3vond_, d3vone_, d3vonf_, d3vong_, d3voni_, d3vonj_, d3vonk_, d3vonl_, d3vonm_, d3vonn_, d3vonp_, d3vonq_, d3vonr_, d3vons_, d3vont_, d3vonu_, d3vonw_, d3vonx_, d3vony_, d3vonz_
        automated match to d4i6la_
      3. 2498145Domain d3vono_: 3von O: [250639]
        Other proteins in same PDB: d3vonb_, d3vonc_, d3vond_, d3vone_, d3vonf_, d3vong_, d3voni_, d3vonj_, d3vonk_, d3vonl_, d3vonm_, d3vonn_, d3vonp_, d3vonq_, d3vonr_, d3vons_, d3vont_, d3vonu_, d3vonw_, d3vonx_, d3vony_, d3vonz_
        automated match to d4i6la_
      4. 2498146Domain d3vonv_: 3von V: [250646]
        Other proteins in same PDB: d3vonb_, d3vonc_, d3vond_, d3vone_, d3vonf_, d3vong_, d3voni_, d3vonj_, d3vonk_, d3vonl_, d3vonm_, d3vonn_, d3vonp_, d3vonq_, d3vonr_, d3vons_, d3vont_, d3vonu_, d3vonw_, d3vonx_, d3vony_, d3vonz_
        automated match to d4i6la_
    29. Domain for 4axl:
    30. Domains for 4axm:
      1. 2498113Domain d4axma_: 4axm A: [234106]
        automated match to d2xu3a_
        complexed with gol, v65
      2. 2498114Domain d4axmb_: 4axm B: [234109]
        automated match to d2xu3a_
        complexed with gol, v65
      3. 2498115Domain d4axmf_: 4axm F: [234107]
        automated match to d2xu3a_
        complexed with gol, v65
      4. 2498116Domain d4axmi_: 4axm I: [234110]
        automated match to d2xu3a_
        complexed with gol, v65
      5. 2498117Domain d4axml_: 4axm L: [234108]
        automated match to d2xu3a_
        complexed with gol, v65
      6. 2498118Domain d4axmo_: 4axm O: [234111]
        automated match to d2xu3a_
        complexed with gol, v65
    31. Domain for 4i6l:
    32. Domain for 5cvm:
    33. Domain for 5f02:
    34. Domain for 5j94:
    35. Domains for 5ja7:
      1. 2498088Domain d5ja7a_: 5ja7 A: [326662]
        automated match to d4lega_
        complexed with 6hm, act, gol, so4; mutant
      2. 2498089Domain d5ja7b_: 5ja7 B: [326729]
        automated match to d4lega_
        complexed with 6hm, act, gol, so4; mutant
    36. Domains for 5k16:
      1. 2498147Domain d5k16a_: 5k16 A: [345721]
        automated match to d5l8wa_
        complexed with gol, zn
      2. 2498148Domain d5k16b_: 5k16 B: [345722]
        automated match to d5l8wa_
        complexed with gol, zn
    37. Domain for 5k1c:
    38. Domain for 5l8h:
    39. Domain for 5l8w:
    40. Domain for 5mae:
    41. Domain for 5maj:
    42. Domain for 5mqy:
    43. Domain for 5ohk:
    44. Domain for 5ohp:
    45. Domain for 6ezp:
  7. 2498152Malaria parasite (Plasmodium falciparum) [TaxId:5833] [189172] (2 PDB entries)
    1. Domains for 2wdt:
      1. 2498153Domain d2wdta_: 2wdt A: [169255]
        Other proteins in same PDB: d2wdtb1, d2wdtb2, d2wdtd1, d2wdtd2
        automated match to d1ucha_
        complexed with cl
      2. 2498154Domain d2wdtc_: 2wdt C: [169257]
        Other proteins in same PDB: d2wdtb1, d2wdtb2, d2wdtd1, d2wdtd2
        automated match to d1ucha_
        complexed with cl
    2. Domains for 2we6:
      1. 2498155Domain d2we6a_: 2we6 A: [169270]
        automated match to d1ucha_
      2. 2498156Domain d2we6b_: 2we6 B: [169271]
        automated match to d1ucha_
  8. 2498157Mouse (Mus musculus) [TaxId:10090] [318905] (2 PDB entries)
    1. Domains for 5cht:
      1. 2498158Domain d5chta1: 5cht A:46-367 [318906]
        Other proteins in same PDB: d5chta2
        automated match to d2ibia1
        complexed with zn
      2. 2498159Domain d5chtb_: 5cht B: [318978]
        Other proteins in same PDB: d5chta2
        automated match to d2ibia1
        complexed with zn
    2. Domains for 5chv:
      1. 2498160Domain d5chva_: 5chv A: [323272]
        Other proteins in same PDB: d5chvc1, d5chvc2, d5chvd1, d5chvd2
        automated match to d2ibia1
        complexed with cl, so4, zn
      2. 2498161Domain d5chvb_: 5chv B: [323278]
        Other proteins in same PDB: d5chvc1, d5chvc2, d5chvd1, d5chvd2
        automated match to d2ibia1
        complexed with cl, so4, zn
  9. 2498162Mycobacterium abscessus [TaxId:561007] [228435] (1 PDB entry)
  10. 2498167Nematode (Caenorhabditis elegans) [TaxId:6239] [256233] (2 PDB entries)
    1. Domain for 4dhi:
    2. Domains for 4dhj:
      1. 2498169Domain d4dhja_: 4dhj A: [240059]
        Other proteins in same PDB: d4dhjb_, d4dhjc_, d4dhjd_, d4dhjf_, d4dhjg_, d4dhjh_, d4dhjj_, d4dhjk_, d4dhjm_, d4dhjn_
        automated match to d4i6la_
      2. 2498170Domain d4dhje_: 4dhj E: [240060]
        Other proteins in same PDB: d4dhjb_, d4dhjc_, d4dhjd_, d4dhjf_, d4dhjg_, d4dhjh_, d4dhjj_, d4dhjk_, d4dhjm_, d4dhjn_
        automated match to d4i6la_
      3. 2498171Domain d4dhji_: 4dhj I: [240061]
        Other proteins in same PDB: d4dhjb_, d4dhjc_, d4dhjd_, d4dhjf_, d4dhjg_, d4dhjh_, d4dhjj_, d4dhjk_, d4dhjm_, d4dhjn_
        automated match to d4i6la_
      4. 2498172Domain d4dhjl_: 4dhj L: [240062]
        Other proteins in same PDB: d4dhjb_, d4dhjc_, d4dhjd_, d4dhjf_, d4dhjg_, d4dhjh_, d4dhjj_, d4dhjk_, d4dhjm_, d4dhjn_
        automated match to d4i6la_
  11. 2498173Nocardia farcinica [TaxId:37329] [231965] (1 PDB entry)
  12. 2498178Pachyrhizus erosus [TaxId:109171] [225133] (1 PDB entry)
  13. 2498180Polyporus squamosus [TaxId:5640] [233246] (2 PDB entries)
    1. Domains for 3phz:
      1. 2498183Domain d3phza2: 3phz A:149-286 [233249]
        Other proteins in same PDB: d3phza1, d3phzb1
        automated match to d2ihoa2
        complexed with gal, nag, sia
      2. 2498184Domain d3phzb2: 3phz B:149-286 [233248]
        Other proteins in same PDB: d3phza1, d3phzb1
        automated match to d2ihoa2
        complexed with gal, nag, sia
    2. Domains for 5mua:
      1. 2498181Domain d5muaa2: 5mua A:149-286 [336677]
        Other proteins in same PDB: d5muaa1, d5muab1
        automated match to d3phza2
        complexed with ca, dms, e64, gal
      2. 2498182Domain d5muab2: 5mua B:149-286 [336633]
        Other proteins in same PDB: d5muaa1, d5muab1
        automated match to d3phza2
        complexed with ca, dms, e64, gal
  14. 2498185Rhizobium loti [TaxId:381] [186994] (1 PDB entry)
  15. 2498187Toxoplasma gondii [TaxId:383379] [188681] (1 PDB entry)
  16. 2498189Trichinella spiralis [TaxId:6334] [197187] (1 PDB entry)
  17. 2498192Trypanosoma brucei [TaxId:999953] [256293] (1 PDB entry)
  18. 2498194Trypanosoma congolense [TaxId:5692] [314470] (1 PDB entry)
  19. 2498198Trypanosome (Trypanosoma brucei) [TaxId:5691] [189337] (2 PDB entries)
    1. Domains for 3hhi:
      1. 2498199Domain d3hhia_: 3hhi A: [177576]
        automated match to d1pbha_
        complexed with 074, gol, li, mg, trs
      2. 2498200Domain d3hhib_: 3hhi B: [177577]
        automated match to d1pbha_
        complexed with 074, gol, li, mg, trs
    2. Domains for 3mor:
      1. 2498201Domain d3mora_: 3mor A: [181467]
        automated match to d1pbha_
        complexed with cl, gol, na
      2. 2498202Domain d3morb_: 3mor B: [181468]
        automated match to d1pbha_
        complexed with cl, gol, na
  20. 2498203Yellow mealworm (Tenebrio molitor) [TaxId:7067] [189891] (2 PDB entries)
    1. Domains for 3qj3:
      1. 2498204Domain d3qj3a_: 3qj3 A: [184410]
        automated match to d7pcka_
        complexed with act
      2. 2498205Domain d3qj3b_: 3qj3 B: [184411]
        automated match to d7pcka_
        complexed with act
    2. Domain for 3qt4:
  21. 3058254Ananas comosus [TaxId:4615] [358316] (2 PDB entries)
    1. Domains for 6mir:
      1. 3058255Domain d6mirb_: 6mir B: [358317]
        automated match to d1iwda_
      2. 3058273Domain d6mira_: 6mir A: [358335]
        automated match to d1iwda_
    2. Domains for 6mis:
      1. 3058271Domain d6misb_: 6mis B: [358333]
        automated match to d1iwda_
        complexed with e64
      2. 3058314Domain d6misa_: 6mis A: [358376]
        automated match to d1iwda_
        complexed with e64

More info for Protein automated matches from d.3.1.0: automated matches

Timeline for Protein automated matches from d.3.1.0: automated matches: