Lineage for Protein: automated matches

  1. Root: SCOPe 2.02
  2. 1143363Class c: Alpha and beta proteins (a/b) [51349] (147 folds)
  3. 1143364Fold c.1: TIM beta/alpha-barrel [51350] (33 superfamilies)
    contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678
    the first seven superfamilies have similar phosphate-binding sites
  4. 1144404Superfamily c.1.4: FMN-linked oxidoreductases [51395] (2 families) (S)
  5. 1144405Family c.1.4.1: FMN-linked oxidoreductases [51396] (19 proteins)
  6. 1144664Protein automated matches [190228] (8 species)
    not a true protein

Species:

  1. 1144665Human (Homo sapiens) [TaxId:9606] [187000] (7 PDB entries)
    1. Domain for 2bxv:
    2. Domain for 2wv8:
    3. Domain for 3fj6:
    4. Domain for 3fjl:
    5. Domain for 3g0u:
    6. Domain for 3g0x:
    7. Domain for 3zwt:
  2. 1144673Lactococcus lactis [TaxId:1358] [186992] (2 PDB entries)
    1. Domains for 2bsl:
      1. 1144676Domain d2bsla_: 2bsl A: [129095]
        automated match to d1dora_
        complexed with act, dhb, fmn, gol, mg
      2. 1144677Domain d2bslb_: 2bsl B: [129096]
        automated match to d1dora_
        complexed with act, dhb, fmn, gol, mg
    2. Domains for 2bx7:
      1. 1144674Domain d2bx7a_: 2bx7 A: [129395]
        automated match to d1dora_
        complexed with 34d, act, fmn, gol, mg
      2. 1144675Domain d2bx7b_: 2bx7 B: [129396]
        automated match to d1dora_
        complexed with 34d, act, fmn, gol, mg
  3. 1144678Leishmania donovani [TaxId:5661] [188354] (1 PDB entry)
  4. 1144683Plasmodium falciparum [TaxId:36329] [189697] (1 PDB entry)
  5. 1144685Rattus norvegicus [TaxId:10116] [195883] (1 PDB entry)
  6. 1144687Solanum lycopersicum [TaxId:4081] [187823] (5 PDB entries)
    1. Domains for 2hs6:
      1. 1144690Domain d2hs6a_: 2hs6 A: [165230]
        automated match to d1q45a_
        complexed with fmn, mes; mutant
      2. 1144691Domain d2hs6b_: 2hs6 B: [165231]
        automated match to d1q45a_
        complexed with fmn, mes; mutant
    2. Domains for 2hs8:
      1. 1144694Domain d2hs8a_: 2hs8 A: [165232]
        automated match to d1q45a_
        complexed with fmn; mutant
      2. 1144695Domain d2hs8b_: 2hs8 B: [165233]
        automated match to d1q45a_
        complexed with fmn; mutant
    3. Domains for 2hsa:
      1. 1144688Domain d2hsaa_: 2hsa A: [165234]
        automated match to d1q45a_
        complexed with cl, fmn, so4
      2. 1144689Domain d2hsab_: 2hsa B: [165235]
        automated match to d1q45a_
        complexed with cl, fmn, so4
    4. Domains for 3hgo:
      1. 1144696Domain d3hgoa_: 3hgo A: [177552]
        automated match to d1q45a_
        complexed with fmn; mutant
      2. 1144697Domain d3hgob_: 3hgo B: [177553]
        automated match to d1q45a_
        complexed with fmn; mutant
    5. Domains for 3hgs:
      1. 1144692Domain d3hgsa_: 3hgs A: [177557]
        automated match to d1q45a_
        complexed with fmn, phb
      2. 1144693Domain d3hgsb_: 3hgs B: [177558]
        automated match to d1q45a_
        complexed with fmn, phb
  7. 1144698Thale cress (Arabidopsis thaliana) [TaxId:3702] [187180] (2 PDB entries)
    1. Domains for 2q3o:
      1. 1144699Domain d2q3oa_: 2q3o A: [139796]
        automated match to d1q45a_
        complexed with fmn
      2. 1144700Domain d2q3ob_: 2q3o B: [139797]
        automated match to d1q45a_
        complexed with fmn
    2. Domain for 2q3r:
  8. 1144702Trypanosoma cruzi [TaxId:5693] [187324] (7 PDB entries)
    1. Domains for 2djl:
      1. 1144705Domain d2djla_: 2djl A: [163640]
        automated match to d2b4ga1
        complexed with fmn, gol, nco, sin
      2. 1144706Domain d2djlb_: 2djl B: [163641]
        automated match to d2b4ga1
        complexed with fmn, gol, nco, sin
    2. Domains for 2djx:
      1. 1144709Domain d2djxa_: 2djx A: [163642]
        automated match to d2b4ga1
        complexed with fmn, nco
      2. 1144710Domain d2djxb_: 2djx B: [163643]
        automated match to d2b4ga1
        complexed with fmn, nco
    3. Domains for 2e68:
      1. 1144707Domain d2e68a_: 2e68 A: [163844]
        automated match to d2b4ga1
        complexed with dor, fmn, gol, nco
      2. 1144708Domain d2e68b_: 2e68 B: [163845]
        automated match to d2b4ga1
        complexed with dor, fmn, gol, nco
    4. Domains for 2e6a:
      1. 1144711Domain d2e6aa_: 2e6a A: [163850]
        automated match to d2b4ga1
        complexed with fmn, gol, nco, oro
      2. 1144712Domain d2e6ab_: 2e6a B: [163851]
        automated match to d2b4ga1
        complexed with fmn, gol, nco, oro
    5. Domains for 2e6d:
      1. 1144713Domain d2e6da_: 2e6d A: [163860]
        automated match to d2b4ga1
        complexed with fmn, fum, gol, nco
      2. 1144714Domain d2e6db_: 2e6d B: [163861]
        automated match to d2b4ga1
        complexed with fmn, fum, gol, nco
    6. Domains for 2e6f:
      1. 1144703Domain d2e6fa_: 2e6f A: [163866]
        automated match to d2b4ga1
        complexed with fmn, gol, nco, oxc
      2. 1144704Domain d2e6fb_: 2e6f B: [163867]
        automated match to d2b4ga1
        complexed with fmn, gol, nco, oxc
    7. Domains for 3c3n:
      1. 1144715Domain d3c3na_: 3c3n A: [173021]
        automated match to d2b4ga1
        complexed with fmn, gol, so4
      2. 1144716Domain d3c3nb_: 3c3n B: [173022]
        automated match to d2b4ga1
        complexed with fmn, gol, so4
      3. 1144717Domain d3c3nc_: 3c3n C: [173023]
        automated match to d2b4ga1
        complexed with fmn, gol, so4
      4. 1144718Domain d3c3nd_: 3c3n D: [173024]
        automated match to d2b4ga1
        complexed with fmn, gol, so4

More info for Protein automated matches from c.1.4.1: FMN-linked oxidoreductases

Timeline for Protein automated matches from c.1.4.1: FMN-linked oxidoreductases: