Lineage for Protein: automated matches

  1. Root: SCOPe 2.03
  2. 1287432Class b: All beta proteins [48724] (174 folds)
  3. 1287433Fold b.1: Immunoglobulin-like beta-sandwich [48725] (28 superfamilies)
    sandwich; 7 strands in 2 sheets; greek-key
    some members of the fold have additional strands
  4. 1299386Superfamily b.1.18: E set domains [81296] (24 families) (S)
    "Early" Ig-like fold families possibly related to the immunoglobulin and/or fibronectin type III superfamilies
  5. 1300237Family b.1.18.0: automated matches [191341] (1 protein)
    not a true family
  6. 1300238Protein automated matches [190226] (22 species)
    not a true protein

Species:

  1. 1300239Ambystoma tigrinum [TaxId:8305] [225004] (1 PDB entry)
  2. 1300242Bacillus amyloliquefaciens [TaxId:1390] [197052] (3 PDB entries)
    1. Domains for 2yow:
      1. 1300245Domain d2yowa_: 2yow A: [197055]
        automated match to d2bena_
      2. 1300246Domain d2yowb_: 2yow B: [198768]
        automated match to d2yowa_
    2. Domains for 2yox:
      1. 1300247Domain d2yoxa_: 2yox A: [207697]
        automated match to d2yoya_
        complexed with cu1
      2. 1300248Domain d2yoxb_: 2yox B: [207698]
        automated match to d2yoya_
        complexed with cu1
    3. Domains for 2yoy:
      1. 1300243Domain d2yoya_: 2yoy A: [197053]
        automated match to d2bena_
        complexed with cu1, edo
      2. 1300244Domain d2yoyb_: 2yoy B: [198769]
        automated match to d2yoya_
        complexed with cu1, edo
  3. 1300249Bos taurus [TaxId:9913] [231496] (1 PDB entry)
  4. 1300251Camponotus japonicus [TaxId:84547] [236657] (1 PDB entry)
  5. 1300253Cellulomonas fimi [TaxId:1708] [231539] (1 PDB entry)
  6. 1300256Chicken (Gallus gallus) [TaxId:9031] [225870] (6 PDB entries)
    1. Domain for 3hbg:
    2. Domain for 3hbp:
    3. Domain for 3hbq:
    4. Domain for 3hc2:
    5. Domain for 3r18:
    6. Domain for 3r19:
  7. 1300263Chikungunya virus [TaxId:37124] [226027] (3 PDB entries)
    1. Domain for 3n40:
    2. Domain for 3n43:
    3. Domain for 3n44:
  8. 1300267Dengue virus 1 [TaxId:11059] [226544] (2 PDB entries)
    1. Domains for 4gsx:
      1. 1300268Domain d4gsxa2: 4gsx A:298-403 [222124]
        Other proteins in same PDB: d4gsxa1, d4gsxb1
        automated match to d1urza1
        complexed with cd, cl, nag
      2. 1300269Domain d4gsxb2: 4gsx B:298-404 [222126]
        Other proteins in same PDB: d4gsxa1, d4gsxb1
        automated match to d1urza1
        complexed with cd, cl, nag
    2. Domains for 4gt0:
      1. 1300270Domain d4gt0a2: 4gt0 A:298-403 [222132]
        Other proteins in same PDB: d4gt0a1, d4gt0b1
        automated match to d1urza1
        complexed with cd, cl, nag
      2. 1300271Domain d4gt0b2: 4gt0 B:298-404 [222134]
        Other proteins in same PDB: d4gt0a1, d4gt0b1
        automated match to d1urza1
        complexed with cd, cl, nag
  9. 1300272Dengue virus 2 thailand/16681/84 [TaxId:31634] [231877] (1 PDB entry)
  10. 1300274Dengue virus 4 [TaxId:11070] [195988] (1 PDB entry)
  11. 1300276Dengue virus type 3 [TaxId:408870] [193303] (1 PDB entry)
  12. 1300279Dengue virus type 4 [TaxId:408871] [236276] (1 PDB entry)
  13. 1300282Enterococcus faecalis [TaxId:1351] [189861] (7 PDB entries)
    1. Domain for 4a02:
    2. Domain for 4alc:
    3. Domain for 4ale:
    4. Domain for 4alq:
    5. Domain for 4alr:
    6. Domain for 4als:
    7. Domain for 4alt:
  14. 1300290Human (Homo sapiens) [TaxId:9606] [186988] (3 PDB entries)
    1. Domain for 2bp3:
    2. Domain for 2brq:
    3. Domains for 3rgh:
      1. 1300293Domain d3rgha_: 3rgh A: [184950]
        automated match to d2diaa1
        complexed with act
      2. 1300294Domain d3rghb_: 3rgh B: [184951]
        automated match to d2diaa1
        complexed with act
  15. 1300295Japanese encephalitis virus [TaxId:11072] [226037] (1 PDB entry)
  16. 1300297Listeria monocytogenes [TaxId:1639] [225010] (1 PDB entry)
  17. 1300299Listeria monocytogenes [TaxId:169963] [225327] (7 PDB entries)
    1. Domains for 2uzx:
      1. 1300317Domain d2uzxa2: 2uzx A:241-320 [206193]
        Other proteins in same PDB: d2uzxa1, d2uzxc1
        automated match to d1m9sa1
      2. 1300318Domain d2uzxc2: 2uzx C:241-320 [206195]
        Other proteins in same PDB: d2uzxa1, d2uzxc1
        automated match to d1m9sa1
    2. Domains for 2wqu:
      1. 1300306Domain d2wqua2: 2wqu A:241-320 [206945]
        Other proteins in same PDB: d2wqua1, d2wqub1, d2wquc1, d2wqud1, d2wque1, d2wquf1
        automated match to d1m9sa1
        complexed with gol, so4
      2. 1300307Domain d2wqub2: 2wqu B:241-320 [206947]
        Other proteins in same PDB: d2wqua1, d2wqub1, d2wquc1, d2wqud1, d2wque1, d2wquf1
        automated match to d1m9sa1
        complexed with gol, so4
      3. 1300308Domain d2wquc2: 2wqu C:241-318 [206949]
        Other proteins in same PDB: d2wqua1, d2wqub1, d2wquc1, d2wqud1, d2wque1, d2wquf1
        automated match to d1m9sa1
        complexed with gol, so4
      4. 1300309Domain d2wqud2: 2wqu D:241-321 [206951]
        Other proteins in same PDB: d2wqua1, d2wqub1, d2wquc1, d2wqud1, d2wque1, d2wquf1
        automated match to d1m9sa1
        complexed with gol, so4
      5. 1300310Domain d2wque2: 2wqu E:241-320 [206953]
        Other proteins in same PDB: d2wqua1, d2wqub1, d2wquc1, d2wqud1, d2wque1, d2wquf1
        automated match to d1m9sa1
        complexed with gol, so4
      6. 1300311Domain d2wquf2: 2wqu F:241-320 [206955]
        Other proteins in same PDB: d2wqua1, d2wqub1, d2wquc1, d2wqud1, d2wque1, d2wquf1
        automated match to d1m9sa1
        complexed with gol, so4
    3. Domains for 2wqv:
      1. 1300312Domain d2wqva2: 2wqv A:241-320 [206957]
        Other proteins in same PDB: d2wqva1, d2wqvb1
        automated match to d1m9sa1
        complexed with pg4, pge
      2. 1300313Domain d2wqvb2: 2wqv B:241-320 [206959]
        Other proteins in same PDB: d2wqva1, d2wqvb1
        automated match to d1m9sa1
        complexed with pg4, pge
    4. Domains for 2wqw:
      1. 1300304Domain d2wqwa2: 2wqw A:241-321 [206961]
        Other proteins in same PDB: d2wqwa1, d2wqwb1
        automated match to d1m9sa1
        complexed with peg
      2. 1300305Domain d2wqwb2: 2wqw B:241-321 [206963]
        Other proteins in same PDB: d2wqwa1, d2wqwb1
        automated match to d1m9sa1
        complexed with peg
    5. Domains for 2wqx:
      1. 1300302Domain d2wqxa2: 2wqx A:241-321 [206965]
        Other proteins in same PDB: d2wqxa1, d2wqxb1
        automated match to d1m9sa1
        mutant
      2. 1300303Domain d2wqxb2: 2wqx B:241-321 [206967]
        Other proteins in same PDB: d2wqxa1, d2wqxb1
        automated match to d1m9sa1
        mutant
    6. Domains for 4aw4:
      1. 1300300Domain d4aw4a2: 4aw4 A:263-342 [234102]
        Other proteins in same PDB: d4aw4a1, d4aw4b1, d4aw4c1
        automated match to d1h6ua1
        complexed with gol, so4
      2. 1300301Domain d4aw4b2: 4aw4 B:263-342 [234104]
        Other proteins in same PDB: d4aw4a1, d4aw4b1, d4aw4c1
        automated match to d1h6ua1
        complexed with gol, so4
    7. Domains for 4cc4:
      1. 1300314Domain d4cc4a2: 4cc4 A:220-297 [234302]
        Other proteins in same PDB: d4cc4a1, d4cc4b_, d4cc4c1, d4cc4d_, d4cc4e1, d4cc4f_
        automated match to d4cc4e2
        complexed with cl, gol, pe4, po4, so4
      2. 1300315Domain d4cc4c2: 4cc4 C:220-298 [234305]
        Other proteins in same PDB: d4cc4a1, d4cc4b_, d4cc4c1, d4cc4d_, d4cc4e1, d4cc4f_
        automated match to d4cc4e2
        complexed with cl, gol, pe4, po4, so4
      3. 1300316Domain d4cc4e2: 4cc4 E:220-297 [228588]
        Other proteins in same PDB: d4cc4a1, d4cc4b_, d4cc4c1, d4cc4d_, d4cc4e1, d4cc4f_
        automated match to d2omza1
        complexed with cl, gol, pe4, po4, so4
  18. 1300319Magnetospirillum magnetotacticum [TaxId:188] [231564] (1 PDB entry)
  19. 1300321Mouse (Mus musculus) [TaxId:10090] [226768] (1 PDB entry)
  20. 1300326Paracoccus denitrificans [TaxId:266] [187968] (3 PDB entries)
    1. Domains for 2ox5:
      1. 1300331Domain d2ox5a_: 2ox5 A: [166888]
        automated match to d1v8ha1
        complexed with act, edo, so4
      2. 1300332Domain d2ox5c_: 2ox5 C: [166889]
        automated match to d1v8ha1
        complexed with act, edo, so4
      3. 1300333Domain d2ox5e_: 2ox5 E: [166890]
        automated match to d1v8ha1
        complexed with act, edo, so4
      4. 1300334Domain d2ox5z_: 2ox5 Z: [166891]
        automated match to d1v8ha1
        complexed with act, edo, so4
    2. Domains for 2oxg:
      1. 1300327Domain d2oxga_: 2oxg A: [166902]
        automated match to d1v8ha1
        complexed with edo, so4
      2. 1300328Domain d2oxgc_: 2oxg C: [166903]
        automated match to d1v8ha1
        complexed with edo, so4
      3. 1300329Domain d2oxge_: 2oxg E: [166904]
        automated match to d1v8ha1
        complexed with edo, so4
      4. 1300330Domain d2oxgz_: 2oxg Z: [166905]
        automated match to d1v8ha1
        complexed with edo, so4
    3. Domains for 2oxh:
      1. 1300335Domain d2oxha_: 2oxh A: [166906]
        automated match to d1v8ha1
        complexed with edo
      2. 1300336Domain d2oxhc_: 2oxh C: [166907]
        automated match to d1v8ha1
        complexed with edo
      3. 1300337Domain d2oxhe_: 2oxh E: [166908]
        automated match to d1v8ha1
        complexed with edo
      4. 1300338Domain d2oxhz_: 2oxh Z: [166909]
        automated match to d1v8ha1
        complexed with edo
  21. 1300339Porphyromonas gingivalis [TaxId:242619] [226635] (1 PDB entry)
  22. 1300344Salmonella enterica [TaxId:90371] [225882] (1 PDB entry)

More info for Protein automated matches from b.1.18.0: automated matches

Timeline for Protein automated matches from b.1.18.0: automated matches: