Lineage for Protein: automated matches

  1. Root: SCOPe 2.04
  2. 1473060Class a: All alpha proteins [46456] (285 folds)
  3. Fold a.118: alpha-alpha superhelix [48370] (24 superfamilies)
    multihelical; 2 (curved) layers: alpha/alpha; right-handed superhelix
  4. 1500528Superfamily a.118.1: ARM repeat [48371] (26 families) (S)
  5. 1501071Family a.118.1.0: automated matches [191340] (1 protein)
    not a true family
  6. 1501072Protein automated matches [190220] (10 species)
    not a true protein

Species:

  1. 1501073African clawed frog (Xenopus laevis) [TaxId:8355] [256268] (1 PDB entry)
  2. 1501076Bacillus cereus [TaxId:1396] [188492] (1 PDB entry)
  3. 1501078Bacillus cereus [TaxId:222523] [189468] (4 PDB entries)
    1. Domain for 3jx7:
    2. Domain for 3jxy:
    3. Domain for 3jxz:
    4. Domain for 3jy1:
  4. 1501083Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] [186980] (6 PDB entries)
    1. Domain for 2bku:
    2. Domain for 2bpt:
    3. Domain for 3bwt:
    4. Domains for 3bx2:
      1. 1501090Domain d3bx2a_: 3bx2 A: [239169]
        automated match to d3bx2b_
        protein/RNA complex; complexed with na, so4
      2. 1501091Domain d3bx2b_: 3bx2 B: [231868]
        automated match to d3q0mb_
        protein/RNA complex; complexed with na, so4
    5. Domains for 3bx3:
      1. 1501092Domain d3bx3a_: 3bx3 A: [245396]
        automated match to d3q0mb_
        protein/RNA complex; complexed with so4; mutant
      2. 1501093Domain d3bx3b_: 3bx3 B: [245397]
        automated match to d3q0mb_
        protein/RNA complex; complexed with so4; mutant
    6. Domains for 3k49:
      1. 1501085Domain d3k49a_: 3k49 A: [179062]
        automated match to d1m8wb_
        protein/RNA complex; complexed with cit
      2. 1501086Domain d3k49c_: 3k49 C: [179063]
        automated match to d1m8wb_
        protein/RNA complex; complexed with cit
      3. 1501087Domain d3k49e_: 3k49 E: [179064]
        automated match to d1m8wb_
        protein/RNA complex; complexed with cit
  5. 1501094Baker's yeast (Saccharomyces cerevisiae) [TaxId:559292] [256146] (1 PDB entry)
  6. 1501096Human (Homo sapiens) [TaxId:9606] [189070] (23 PDB entries)
    1. Domains for 2jdq:
      1. 1501101Domain d2jdqa_: 2jdq A: [230912]
        Other proteins in same PDB: d2jdqd_, d2jdqe_
        automated match to d3tj3a_
        protein/RNA complex
      2. 1501102Domain d2jdqb_: 2jdq B: [238701]
        Other proteins in same PDB: d2jdqd_, d2jdqe_
        automated match to d2jdqa_
        protein/RNA complex
    2. Domain for 2xzg:
    3. Domain for 3dbs:
    4. Domain for 3fey:
    5. Domain for 3jui:
    6. Domain for 3l6x:
    7. Domains for 3l6y:
      1. 1501119Domain d3l6yc_: 3l6y C: [247362]
        automated match to d1xm9a1
      2. 1501120Domain d3l6ye_: 3l6y E: [247363]
        automated match to d1xm9a1
    8. Domains for 3mdj:
      1. 1501108Domain d3mdja4: 3mdj A:615-934 [247647]
        Other proteins in same PDB: d3mdja1, d3mdja2, d3mdja3, d3mdjb1, d3mdjb2, d3mdjb3, d3mdjc1, d3mdjc2, d3mdjc3
        automated match to d2yd0a4
        complexed with bes, nag, zn
      2. 1501109Domain d3mdjb4: 3mdj B:615-934 [247651]
        Other proteins in same PDB: d3mdja1, d3mdja2, d3mdja3, d3mdjb1, d3mdjb2, d3mdjb3, d3mdjc1, d3mdjc2, d3mdjc3
        automated match to d2yd0a4
        complexed with bes, nag, zn
      3. 1501110Domain d3mdjc4: 3mdj C:615-934 [247655]
        Other proteins in same PDB: d3mdja1, d3mdja2, d3mdja3, d3mdjb1, d3mdjb2, d3mdjb3, d3mdjc1, d3mdjc2, d3mdjc3
        automated match to d2yd0a4
        complexed with bes, nag, zn
    9. Domains for 3qnf:
      1. 1501117Domain d3qnfb4: 3qnf B:615-935 [248937]
        Other proteins in same PDB: d3qnfa1, d3qnfa2, d3qnfa3, d3qnfb1, d3qnfb2, d3qnfb3, d3qnfc1, d3qnfc2, d3qnfc3
        automated match to d2yd0a4
        complexed with nag, zn
      2. 1501118Domain d3qnfc4: 3qnf C:615-937 [248941]
        Other proteins in same PDB: d3qnfa1, d3qnfa2, d3qnfa3, d3qnfb1, d3qnfb2, d3qnfb3, d3qnfc1, d3qnfc2, d3qnfc3
        automated match to d2yd0a4
        complexed with nag, zn
    10. Domains for 3se6:
      1. 1501122Domain d3se6a4: 3se6 A:638-961 [249388]
        Other proteins in same PDB: d3se6a1, d3se6a2, d3se6a3, d3se6b1, d3se6b2, d3se6b3
        automated match to d2yd0a4
        complexed with lys, mes, nag, zn
      2. 1501123Domain d3se6b4: 3se6 B:638-961 [249392]
        Other proteins in same PDB: d3se6a1, d3se6a2, d3se6a3, d3se6b1, d3se6b2, d3se6b3
        automated match to d2yd0a4
        complexed with lys, mes, nag, zn
    11. Domains for 3tj3:
      1. 1501111Domain d3tj3a_: 3tj3 A: [216835]
        automated match to d1ee5a_
      2. 1501112Domain d3tj3b_: 3tj3 B: [216836]
        automated match to d1ee5a_
    12. Domain for 3zvv:
    13. Domain for 3zw3:
    14. Domain for 4anu:
    15. Domain for 4anv:
    16. Domain for 4anw:
    17. Domain for 4anx:
    18. Domain for 4g55:
    19. Domain for 4hle:
    20. Domain for 4j6i:
    21. Domains for 4jbs:
      1. 1501124Domain d4jbsa4: 4jbs A:638-961 [252875]
        Other proteins in same PDB: d4jbsa1, d4jbsa2, d4jbsa3, d4jbsb1, d4jbsb2, d4jbsb3
        automated match to d2yd0a4
        complexed with imd, nag, p52, zn
      2. 1501125Domain d4jbsb4: 4jbs B:638-961 [252879]
        Other proteins in same PDB: d4jbsa1, d4jbsa2, d4jbsa3, d4jbsb1, d4jbsb2, d4jbsb3
        automated match to d2yd0a4
        complexed with imd, nag, p52, zn
    22. Domain for 4p8q:
    23. Domain for 4urk:
  7. 1501128Neisseria meningitidis [TaxId:122586] [259505] (1 PDB entry)
  8. 1501130Oryza sativa [TaxId:39947] [226552] (2 PDB entries)
    1. Domain for 4b8j:
    2. Domain for 4b8o:
  9. 1501133Rice (Oryza sativa) [TaxId:4530] [256208] (2 PDB entries)
    1. Domain for 4bpl:
    2. Domains for 4bqk:
      1. 1501134Domain d4bqka_: 4bqk A: [251302]
        automated match to d1y2ac_
        complexed with peg
      2. 1501135Domain d4bqkb_: 4bqk B: [251303]
        automated match to d1y2ac_
        complexed with peg
  10. 1501137Thermoplasma acidophilum [TaxId:273075] [256035] (1 PDB entry)

More info for Protein automated matches from a.118.1.0: automated matches

Timeline for Protein automated matches from a.118.1.0: automated matches: