Lineage for Protein: automated matches

  1. Root: SCOPe 2.06
  2. 2078559Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2139769Fold c.79: Tryptophan synthase beta subunit-like PLP-dependent enzymes [53685] (1 superfamily)
    consists of two similar domains related by pseudo dyad; duplication
    core: 3 layers, a/b/a; parallel beta-sheet of 4 strands, order 3214
  4. 2139770Superfamily c.79.1: Tryptophan synthase beta subunit-like PLP-dependent enzymes [53686] (2 families) (S)
  5. 2140083Family c.79.1.0: automated matches [191338] (1 protein)
    not a true family
  6. 2140084Protein automated matches [190215] (32 species)
    not a true protein

Species:

  1. 2140085Aquifex aeolicus [TaxId:63363] [188641] (1 PDB entry)
  2. 2140090Bacillus anthracis [TaxId:260799] [259101] (1 PDB entry)
  3. 2140092Bacillus anthracis [TaxId:261594] [229005] (1 PDB entry)
  4. 2140095Coxiella burnetii [TaxId:227377] [236642] (1 PDB entry)
  5. 2140097Entamoeba (Entamoeba histolytica) [TaxId:5759] [229402] (1 PDB entry)
  6. 2140099Entamoeba histolytica [TaxId:294381] [225437] (5 PDB entries)
    1. Domains for 2pqm:
      1. 2140100Domain d2pqma1: 2pqm A:2-337 [231167]
        Other proteins in same PDB: d2pqma2
        automated match to d4jbla_
        complexed with plp, so4
      2. 2140101Domain d2pqmb_: 2pqm B: [238814]
        Other proteins in same PDB: d2pqma2
        automated match to d2pqma_
        complexed with plp, so4
    2. Domains for 3bm5:
      1. 2140107Domain d3bm5a1: 3bm5 A:2-337 [208660]
        Other proteins in same PDB: d3bm5a2
        automated match to d3spxa_
        complexed with cys, plp, so4
      2. 2140108Domain d3bm5b_: 3bm5 B: [208661]
        Other proteins in same PDB: d3bm5a2
        automated match to d3spxa_
        complexed with cys, plp, so4
    3. Domain for 4il5:
    4. Domains for 4jbl:
      1. 2140104Domain d4jbla1: 4jbl A:1-337 [229420]
        Other proteins in same PDB: d4jbla2
        automated match to d3bm5a_
        complexed with met, so4
      2. 2140105Domain d4jblb_: 4jbl B: [234953]
        Other proteins in same PDB: d4jbla2
        automated match to d4jbla_
        complexed with met, so4
    5. Domains for 4jbn:
      1. 2140102Domain d4jbna_: 4jbn A: [234959]
        Other proteins in same PDB: d4jbnb2
        automated match to d4jbnb_
        complexed with so4
      2. 2140103Domain d4jbnb1: 4jbn B:2-337 [229419]
        Other proteins in same PDB: d4jbnb2
        automated match to d3bm5a_
        complexed with so4
  7. 2140109Escherichia coli [TaxId:562] [186974] (2 PDB entries)
    1. Domains for 2bhs:
      1. 2140110Domain d2bhsb_: 2bhs B: [128547]
        Other proteins in same PDB: d2bhsa1
        automated match to d1o58a_
        complexed with plp
      2. 2140111Domain d2bhsc_: 2bhs C: [128548]
        Other proteins in same PDB: d2bhsa1
        automated match to d1o58a_
        complexed with plp
      3. 2140112Domain d2bhsd_: 2bhs D: [128549]
        Other proteins in same PDB: d2bhsa1
        automated match to d1o58a_
        complexed with plp
    2. Domains for 2bht:
      1. 2140113Domain d2bhtb_: 2bht B: [128551]
        Other proteins in same PDB: d2bhta1
        automated match to d1o58a_
        complexed with plp
      2. 2140114Domain d2bhtc_: 2bht C: [128552]
        Other proteins in same PDB: d2bhta1
        automated match to d1o58a_
        complexed with plp
      3. 2140115Domain d2bhtd_: 2bht D: [128553]
        Other proteins in same PDB: d2bhta1
        automated match to d1o58a_
        complexed with plp
  8. 2140116Geobacillus kaustophilus [TaxId:235909] [225300] (1 PDB entry)
  9. 2140118Haemophilus influenzae [TaxId:71421] [276702] (2 PDB entries)
    1. Domain for 4ore:
    2. Domain for 5dbh:
  10. 2140121Helicobacter pylori [TaxId:85962] [229231] (3 PDB entries)
    1. Domains for 4i1x:
      1. 2140124Domain d4i1xa_: 4i1x A: [307533]
        automated match to d4r2va_
      2. 2140125Domain d4i1xb_: 4i1x B: [307534]
        automated match to d4r2va_
    2. Domains for 4r2v:
      1. 2140122Domain d4r2va1: 4r2v A:2-306 [263803]
        Other proteins in same PDB: d4r2va2, d4r2vb2
      2. 2140123Domain d4r2vb1: 4r2v B:2-306 [259512]
        Other proteins in same PDB: d4r2va2, d4r2vb2
        automated match to d4i1xa_
    3. Domains for 5hbg:
      1. 2271483Domain d5hbga_: 5hbg A: [314784]
        automated match to d4i1xb_
        complexed with oas
      2. 2271815Domain d5hbgb_: 5hbg B: [315116]
        automated match to d4i1xb_
        complexed with oas
  11. 2140126Human (Homo sapiens) [TaxId:9606] [188411] (3 PDB entries)
    1. Domains for 2rkb:
      1. 2140129Domain d2rkba_: 2rkb A: [168160]
        automated match to d1pwha_
        complexed with k, plp
      2. 2140130Domain d2rkbb_: 2rkb B: [168161]
        automated match to d1pwha_
        complexed with k, plp
      3. 2140131Domain d2rkbc_: 2rkb C: [168162]
        automated match to d1pwha_
        complexed with k, plp
      4. 2140132Domain d2rkbd_: 2rkb D: [168163]
        automated match to d1pwha_
        complexed with k, plp
      5. 2140133Domain d2rkbe_: 2rkb E: [168164]
        automated match to d1pwha_
        complexed with k, plp
    2. Domain for 3l6b:
    3. Domain for 3l6r:
  12. 2140134Leishmania donovani [TaxId:5661] [195000] (1 PDB entry)
  13. 2140136Leishmania major [TaxId:5664] [234069] (1 PDB entry)
  14. 2140139Microcystis aeruginosa [TaxId:267872] [257035] (2 PDB entries)
    1. Domains for 4lma:
      1. 2140141Domain d4lmaa_: 4lma A: [257036]
        automated match to d4aira_
        complexed with mpd, plp
      2. 2140142Domain d4lmab_: 4lma B: [261782]
        automated match to d4aira_
        complexed with mpd, plp
    2. Domain for 4lmb:
  15. 2140143Mycobacterium marinum [TaxId:216594] [226125] (1 PDB entry)
  16. 2140145Mycobacterium tuberculosis [TaxId:1773] [188598] (7 PDB entries)
    1. Domain for 2q3b:
    2. Domain for 2q3d:
    3. Domains for 3dki:
      1. 2140150Domain d3dkia_: 3dki A: [174034]
        Other proteins in same PDB: d3dkib2
        automated match to d2bhsa1
        complexed with na
      2. 2140151Domain d3dkib1: 3dki B:1-316 [174035]
        Other proteins in same PDB: d3dkib2
        automated match to d2bhsa1
        complexed with na
    4. Domains for 3fgp:
      1. 2140148Domain d3fgpa_: 3fgp A: [175773]
        Other proteins in same PDB: d3fgpb2
        automated match to d2bhsa1
      2. 2140149Domain d3fgpb1: 3fgp B:1-323 [175774]
        Other proteins in same PDB: d3fgpb2
        automated match to d2bhsa1
    5. Domain for 3zei:
    6. Domain for 5i6d:
    7. Domain for 5i7a:
  17. 2140153Mycobacterium tuberculosis [TaxId:83332] [188609] (9 PDB entries)
    1. Domains for 3dwg:
      1. 2140154Domain d3dwga1: 3dwg A:1-323 [174305]
        Other proteins in same PDB: d3dwga2, d3dwgb2
        automated match to d2bhsa1
        complexed with plp
      2. 2140155Domain d3dwgb1: 3dwg B:1-323 [174306]
        Other proteins in same PDB: d3dwga2, d3dwgb2
        automated match to d2bhsa1
        complexed with plp
    2. Domains for 3dwi:
      1. 2140156Domain d3dwia_: 3dwi A: [174307]
        automated match to d2bhsa1
        complexed with plp, so4
      2. 2140157Domain d3dwib_: 3dwi B: [174308]
        automated match to d2bhsa1
        complexed with plp, so4
    3. Domains for 5i6d:
      1. 2278019Domain d5i6da_: 5i6d A: [321320]
        Other proteins in same PDB: d5i6dc2
        automated match to d3dwia_
        complexed with au6, gol, plp
      2. 2278020Domain d5i6dc1: 5i6d C:1-306 [321321]
        Other proteins in same PDB: d5i6dc2
        automated match to d3dwia_
        complexed with au6, gol, plp
      3. 2278034Domain d5i6dd_: 5i6d D: [321335]
        Other proteins in same PDB: d5i6dc2
        automated match to d3dwia_
        complexed with au6, gol, plp
    4. Domains for 5i7a:
      1. 2278083Domain d5i7aa_: 5i7a A: [321384]
        automated match to d3dwia_
        complexed with 68q, plp
      2. 2278084Domain d5i7ac_: 5i7a C: [321385]
        automated match to d3dwia_
        complexed with 68q, plp
    5. Domains for 5i7h:
      1. 2278009Domain d5i7hc_: 5i7h C: [321310]
        automated match to d3dwia_
        complexed with 68v, cl, plp
      2. 2278076Domain d5i7ha_: 5i7h A: [321377]
        automated match to d3dwia_
        complexed with 68v, cl, plp
      3. 2278106Domain d5i7hb_: 5i7h B: [321407]
        automated match to d3dwia_
        complexed with 68v, cl, plp
    6. Domains for 5i7o:
      1. 2278010Domain d5i7ob_: 5i7o B: [321311]
        automated match to d3dwia_
        complexed with plp, s16
      2. 2278036Domain d5i7oc_: 5i7o C: [321337]
        automated match to d3dwia_
        complexed with plp, s16
      3. 2278051Domain d5i7od_: 5i7o D: [321352]
        automated match to d3dwia_
        complexed with plp, s16
      4. 2278055Domain d5i7oa_: 5i7o A: [321356]
        automated match to d3dwia_
        complexed with plp, s16
    7. Domains for 5i7r:
      1. 2278005Domain d5i7rb_: 5i7r B: [321306]
        automated match to d3dwia_
        complexed with 68w, act, plp
      2. 2278011Domain d5i7ra_: 5i7r A: [321312]
        automated match to d3dwia_
        complexed with 68w, act, plp
    8. Domains for 5iw8:
      1. 2278042Domain d5iw8a_: 5iw8 A: [321343]
        automated match to d3dwia_
        complexed with 6ec, na, plp
      2. 2278127Domain d5iw8b_: 5iw8 B: [321428]
        automated match to d3dwia_
        complexed with 6ec, na, plp
    9. Domains for 5iwc:
      1. 2278052Domain d5iwca_: 5iwc A: [321353]
        automated match to d3dwia_
        complexed with 6eq, plp
      2. 2278056Domain d5iwcb_: 5iwc B: [321357]
        automated match to d3dwia_
        complexed with 6eq, plp
  18. 2140158Mycobacterium ulcerans [TaxId:362242] [226546] (1 PDB entry)
  19. 2140163Norway rat (Rattus norvegicus) [TaxId:10116] [196477] (2 PDB entries)
    1. Domains for 3hmk:
      1. 2140164Domain d3hmka_: 3hmk A: [211130]
        automated match to d3l6cb_
        complexed with mn, plp
      2. 2140165Domain d3hmkb_: 3hmk B: [211131]
        automated match to d3l6cb_
        complexed with mn, plp
    2. Domains for 3l6c:
      1. 2140166Domain d3l6ca_: 3l6c A: [199700]
        automated match to d3l6cb_
        complexed with mli, mn, plp
      2. 2140167Domain d3l6cb_: 3l6c B: [196478]
        automated match to d3l6ba_
        complexed with mli, mn, plp
  20. 2140168Rhizomucor miehei [TaxId:1031333] [311491] (1 PDB entry)
  21. 2140170Salmonella typhimurium [TaxId:90371] [187759] (13 PDB entries)
    1. Domains for 2gn0:
      1. 2140175Domain d2gn0a1: 2gn0 A:2-325 [164763]
        Other proteins in same PDB: d2gn0a2, d2gn0c2
        automated match to d1v71a1
        complexed with na
      2. 2140176Domain d2gn0b_: 2gn0 B: [164764]
        Other proteins in same PDB: d2gn0a2, d2gn0c2
        automated match to d1v71a1
        complexed with na
      3. 2140177Domain d2gn0c1: 2gn0 C:2-325 [164765]
        Other proteins in same PDB: d2gn0a2, d2gn0c2
        automated match to d1v71a1
        complexed with na
      4. 2140178Domain d2gn0d_: 2gn0 D: [164766]
        Other proteins in same PDB: d2gn0a2, d2gn0c2
        automated match to d1v71a1
        complexed with na
    2. Domains for 2gn1:
      1. 2140207Domain d2gn1a1: 2gn1 A:2-325 [164767]
        Other proteins in same PDB: d2gn1a2
        automated match to d1v71a1
        complexed with na
      2. 2140208Domain d2gn1b_: 2gn1 B: [164768]
        Other proteins in same PDB: d2gn1a2
        automated match to d1v71a1
        complexed with na
    3. Domain for 2gn2:
    4. Domains for 4d8t:
      1. 2140199Domain d4d8ta_: 4d8t A: [219575]
        automated match to d4d92a_
        complexed with ben, cl, so4
      2. 2140200Domain d4d8tb_: 4d8t B: [219576]
        automated match to d4d92c_
        complexed with ben, cl, so4
      3. 2140201Domain d4d8tc_: 4d8t C: [219577]
        automated match to d4d92b_
        complexed with ben, cl, so4
      4. 2140202Domain d4d8td_: 4d8t D: [219578]
        automated match to d4d92a_
        complexed with ben, cl, so4
    5. Domains for 4d8w:
      1. 2140187Domain d4d8wa_: 4d8w A: [219579]
        automated match to d4d92a_
        complexed with ben, cl, edo, pyr, so4
      2. 2140188Domain d4d8wb_: 4d8w B: [219580]
        automated match to d4d92a_
        complexed with ben, cl, edo, pyr, so4
      3. 2140189Domain d4d8wc_: 4d8w C: [219581]
        automated match to d4d92c_
        complexed with ben, cl, edo, pyr, so4
      4. 2140190Domain d4d8wd_: 4d8w D: [219582]
        automated match to d4d92a_
        complexed with ben, cl, edo, pyr, so4
    6. Domains for 4d92:
      1. 2140195Domain d4d92a_: 4d92 A: [195288]
        automated match to d1j0aa_
        complexed with ben, pyr, so4
      2. 2140196Domain d4d92b_: 4d92 B: [195287]
        automated match to d1j0aa_
        complexed with ben, pyr, so4
      3. 2140197Domain d4d92c_: 4d92 C: [195286]
        automated match to d1j0aa_
        complexed with ben, pyr, so4
      4. 2140198Domain d4d92d_: 4d92 D: [195289]
        automated match to d1j0aa_
        complexed with ben, pyr, so4
    7. Domains for 4d96:
      1. 2140203Domain d4d96a_: 4d96 A: [219592]
        automated match to d4d92a_
        complexed with 5pa, ben, so4
      2. 2140204Domain d4d96b_: 4d96 B: [219593]
        automated match to d4d92c_
        complexed with 5pa, ben, so4
      3. 2140205Domain d4d96c_: 4d96 C: [219594]
        automated match to d4d92c_
        complexed with 5pa, ben, so4
      4. 2140206Domain d4d96d_: 4d96 D: [219595]
        automated match to d4d92a_
        complexed with 5pa, ben, so4
    8. Domains for 4d97:
      1. 2140179Domain d4d97a_: 4d97 A: [195292]
        automated match to d1j0aa_
        complexed with ben, dsn
      2. 2140180Domain d4d97b_: 4d97 B: [195290]
        automated match to d1j0aa_
        complexed with ben, dsn
      3. 2140181Domain d4d97c_: 4d97 C: [195291]
        automated match to d1j0aa_
        complexed with ben, dsn
      4. 2140182Domain d4d97d_: 4d97 D: [201644]
        automated match to d4d97a_
        complexed with ben, dsn
    9. Domains for 4d99:
      1. 2140191Domain d4d99a_: 4d99 A: [219598]
        automated match to d4d92a_
        complexed with ben, na, ser
      2. 2140192Domain d4d99b_: 4d99 B: [219599]
        automated match to d4d92b_
        complexed with ben, na, ser
      3. 2140193Domain d4d99c_: 4d99 C: [219600]
        automated match to d4d92b_
        complexed with ben, na, ser
      4. 2140194Domain d4d99d_: 4d99 D: [219601]
        automated match to d4d92a_
        complexed with ben, na, ser
    10. Domains for 4d9b:
      1. 2140171Domain d4d9ba_: 4d9b A: [219602]
        automated match to d4d92a_
        complexed with ben, edo, pmp
      2. 2140172Domain d4d9bb_: 4d9b B: [219603]
        automated match to d4d92a_
        complexed with ben, edo, pmp
      3. 2140173Domain d4d9bc_: 4d9b C: [219604]
        automated match to d4d92c_
        complexed with ben, edo, pmp
      4. 2140174Domain d4d9bd_: 4d9b D: [219605]
        automated match to d4d92a_
        complexed with ben, edo, pmp
    11. Domains for 4d9c:
      1. 2140183Domain d4d9ca_: 4d9c A: [219606]
        automated match to d4d92a_
        complexed with ben, pmp
      2. 2140184Domain d4d9cb_: 4d9c B: [219607]
        automated match to d4d92b_
        complexed with ben, pmp
      3. 2140185Domain d4d9cc_: 4d9c C: [219608]
        automated match to d4d92c_
        complexed with ben, pmp
      4. 2140186Domain d4d9cd_: 4d9c D: [219609]
        automated match to d4d92a_
        complexed with ben, pmp
    12. Domains for 4d9e:
      1. 2140210Domain d4d9ea_: 4d9e A: [219610]
        automated match to d4d92a_
        complexed with ben, lcs
      2. 2140211Domain d4d9eb_: 4d9e B: [219611]
        automated match to d4d92b_
        complexed with ben, lcs
      3. 2140212Domain d4d9ec_: 4d9e C: [219612]
        automated match to d4d92b_
        complexed with ben, lcs
      4. 2140213Domain d4d9ed_: 4d9e D: [219613]
        automated match to d4d92a_
        complexed with ben, lcs
    13. Domains for 4d9f:
      1. 2140214Domain d4d9fa_: 4d9f A: [219614]
        automated match to d4d92a_
        complexed with ben, dcs
      2. 2140215Domain d4d9fb_: 4d9f B: [219615]
        automated match to d4d92b_
        complexed with ben, dcs
      3. 2140216Domain d4d9fc_: 4d9f C: [219616]
        automated match to d4d92c_
        complexed with ben, dcs
      4. 2140217Domain d4d9fd_: 4d9f D: [219617]
        automated match to d4d92a_
        complexed with ben, dcs
  22. 2140218Soybean (Glycine max) [TaxId:3847] [226469] (2 PDB entries)
    1. Domains for 3vbe:
      1. 2140225Domain d3vbea_: 3vbe A: [217743]
        Other proteins in same PDB: d3vbec2
        automated match to d1oasa_
        complexed with plp
      2. 2140226Domain d3vbeb_: 3vbe B: [217744]
        Other proteins in same PDB: d3vbec2
        automated match to d1d6sa_
        complexed with plp
      3. 2140227Domain d3vbec1: 3vbe C:50-372 [217745]
        Other proteins in same PDB: d3vbec2
        automated match to d1oasa_
        complexed with plp
      4. 2140228Domain d3vbed_: 3vbe D: [217746]
        Other proteins in same PDB: d3vbec2
        automated match to d1oasa_
        complexed with plp
    2. Domains for 3vc3:
      1. 2140219Domain d3vc3a_: 3vc3 A: [217756]
        automated match to d1oasa_
        complexed with c6p; mutant
      2. 2140220Domain d3vc3b_: 3vc3 B: [217757]
        automated match to d1d6sa_
        complexed with c6p; mutant
      3. 2140221Domain d3vc3c_: 3vc3 C: [217758]
        automated match to d1oasa_
        complexed with c6p; mutant
      4. 2140222Domain d3vc3d_: 3vc3 D: [217759]
        automated match to d1oasa_
        complexed with c6p; mutant
      5. 2140223Domain d3vc3e_: 3vc3 E: [217760]
        automated match to d1oasa_
        complexed with c6p; mutant
      6. 2140224Domain d3vc3f_: 3vc3 F: [217761]
        automated match to d1oasa_
        complexed with c6p; mutant
  23. 2140229Streptomyces lavendulae [TaxId:1914] [275483] (2 PDB entries)
    1. Domains for 3x43:
      1. 2140232Domain d3x43a_: 3x43 A: [275485]
        automated match to d4ofxa_
        complexed with plp
      2. 2140233Domain d3x43b_: 3x43 B: [275484]
        automated match to d4ofxa_
        complexed with plp
      3. 2140234Domain d3x43c_: 3x43 C: [275486]
        automated match to d4ofxa_
        complexed with plp
      4. 2140235Domain d3x43d_: 3x43 D: [275488]
        automated match to d4ofxa_
        complexed with plp
      5. 2140236Domain d3x43e_: 3x43 E: [275489]
        automated match to d4ofxa_
        complexed with plp
      6. 2140237Domain d3x43f_: 3x43 F: [275487]
        automated match to d4ofxa_
        complexed with plp
      7. 2140238Domain d3x43g_: 3x43 G: [275490]
        automated match to d4ofxa_
        complexed with plp
      8. 2140239Domain d3x43h_: 3x43 H: [275491]
        automated match to d4ofxa_
        complexed with plp
    2. Domains for 3x44:
      1. 2140230Domain d3x44a_: 3x44 A: [275492]
        automated match to d4ofxa_
        complexed with pus; mutant
      2. 2140231Domain d3x44b_: 3x44 B: [275493]
        automated match to d4ofxa_
        complexed with pus; mutant
  24. 2140240Thale cress (Arabidopsis thaliana) [TaxId:3702] [256179] (1 PDB entry)
  25. 2269533Zea mays [TaxId:4577] [312838] (1 PDB entry)
  26. 2270006Staphylococcus aureus [TaxId:426430] [313311] (4 PDB entries)
    1. Domain for 5d84:
    2. Domain for 5d85:
    3. Domain for 5d86:
    4. Domain for 5d87:
  27. 2276062Streptococcus pneumoniae [TaxId:170187] [319363] (1 PDB entry)
  28. 2283544Lactobacillus plantarum [TaxId:220668] [326845] (1 PDB entry)
  29. 2289246Brucella abortus [TaxId:430066] [332547] (2 PDB entries)
    1. Domains for 5jis:
      1. 2289283Domain d5jisa_: 5jis A: [332584]
        automated match to d4airb_
      2. 2289570Domain d5jisb_: 5jis B: [332871]
        automated match to d4airb_
    2. Domains for 5jjc:
      1. 2289247Domain d5jjcd_: 5jjc D: [332548]
        automated match to d4airb_
        mutant
      2. 2289249Domain d5jjca_: 5jjc A: [332550]
        automated match to d4airb_
        mutant
      3. 2289250Domain d5jjcb_: 5jjc B: [332551]
        automated match to d4airb_
        mutant
      4. 2289257Domain d5jjcc_: 5jjc C: [332558]
        automated match to d4airb_
        mutant
  30. 2289801Planctopirus limnophila [TaxId:521674] [333102] (1 PDB entry)
  31. 2290077Fusobacterium nucleatum [TaxId:190304] [333378] (2 PDB entries)
    1. Domain for 5b53:
    2. Domains for 5b55:
      1. 2290078Domain d5b55b_: 5b55 B: [333379]
        automated match to d5d86a_
        complexed with 0jo, peg, plp; mutant
      2. 2290079Domain d5b55a_: 5b55 A: [333380]
        automated match to d5d86a_
        complexed with 0jo, peg, plp; mutant
  32. 2294032Bacillus anthracis [TaxId:1392] [337333] (1 PDB entry)

More info for Protein automated matches from c.79.1.0: automated matches

Timeline for Protein automated matches from c.79.1.0: automated matches: