SCOPe Funding Alert: SCOPe support from the NIH ended in April 2016. John-Marc Chandonia is the primary maintainer and has continued to develop SCOPe using vacation time. Three proposals to the NIH for continued funding have been unsuccessful. If our current NIH proposal is not funded, SCOPe will shut down permanently in Summer 2017 as Dr. Chandonia will need to seek a new position.

Lineage for Protein: automated matches

  1. Root: SCOPe 2.06
  2. 2078559Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2139769Fold c.79: Tryptophan synthase beta subunit-like PLP-dependent enzymes [53685] (1 superfamily)
    consists of two similar domains related by pseudo dyad; duplication
    core: 3 layers, a/b/a; parallel beta-sheet of 4 strands, order 3214
  4. 2139770Superfamily c.79.1: Tryptophan synthase beta subunit-like PLP-dependent enzymes [53686] (2 families) (S)
  5. 2140083Family c.79.1.0: automated matches [191338] (1 protein)
    not a true family
  6. 2140084Protein automated matches [190215] (28 species)
    not a true protein

Species:

  1. 2140085Aquifex aeolicus [TaxId:63363] [188641] (1 PDB entry)
  2. 2140090Bacillus anthracis [TaxId:260799] [259101] (1 PDB entry)
  3. 2140092Bacillus anthracis [TaxId:261594] [229005] (1 PDB entry)
  4. 2140095Coxiella burnetii [TaxId:227377] [236642] (1 PDB entry)
  5. 2140097Entamoeba (Entamoeba histolytica) [TaxId:5759] [229402] (1 PDB entry)
  6. 2140099Entamoeba histolytica [TaxId:294381] [225437] (5 PDB entries)
    1. Domains for 2pqm:
      1. 2140100Domain d2pqma1: 2pqm A:2-337 [231167]
        Other proteins in same PDB: d2pqma2
        automated match to d4jbla_
        complexed with plp, so4
      2. 2140101Domain d2pqmb_: 2pqm B: [238814]
        Other proteins in same PDB: d2pqma2
        automated match to d2pqma_
        complexed with plp, so4
    2. Domains for 3bm5:
      1. 2140107Domain d3bm5a1: 3bm5 A:2-337 [208660]
        Other proteins in same PDB: d3bm5a2
        automated match to d3spxa_
        complexed with cys, plp, so4
      2. 2140108Domain d3bm5b_: 3bm5 B: [208661]
        Other proteins in same PDB: d3bm5a2
        automated match to d3spxa_
        complexed with cys, plp, so4
    3. Domain for 4il5:
    4. Domains for 4jbl:
      1. 2140104Domain d4jbla1: 4jbl A:1-337 [229420]
        Other proteins in same PDB: d4jbla2
        automated match to d3bm5a_
        complexed with met, so4
      2. 2140105Domain d4jblb_: 4jbl B: [234953]
        Other proteins in same PDB: d4jbla2
        automated match to d4jbla_
        complexed with met, so4
    5. Domains for 4jbn:
      1. 2140102Domain d4jbna_: 4jbn A: [234959]
        Other proteins in same PDB: d4jbnb2
        automated match to d4jbnb_
        complexed with so4
      2. 2140103Domain d4jbnb1: 4jbn B:2-337 [229419]
        Other proteins in same PDB: d4jbnb2
        automated match to d3bm5a_
        complexed with so4
  7. 2140109Escherichia coli [TaxId:562] [186974] (2 PDB entries)
    1. Domains for 2bhs:
      1. 2140110Domain d2bhsb_: 2bhs B: [128547]
        Other proteins in same PDB: d2bhsa1
        automated match to d1o58a_
        complexed with plp
      2. 2140111Domain d2bhsc_: 2bhs C: [128548]
        Other proteins in same PDB: d2bhsa1
        automated match to d1o58a_
        complexed with plp
      3. 2140112Domain d2bhsd_: 2bhs D: [128549]
        Other proteins in same PDB: d2bhsa1
        automated match to d1o58a_
        complexed with plp
    2. Domains for 2bht:
      1. 2140113Domain d2bhtb_: 2bht B: [128551]
        Other proteins in same PDB: d2bhta1
        automated match to d1o58a_
        complexed with plp
      2. 2140114Domain d2bhtc_: 2bht C: [128552]
        Other proteins in same PDB: d2bhta1
        automated match to d1o58a_
        complexed with plp
      3. 2140115Domain d2bhtd_: 2bht D: [128553]
        Other proteins in same PDB: d2bhta1
        automated match to d1o58a_
        complexed with plp
  8. 2140116Geobacillus kaustophilus [TaxId:235909] [225300] (1 PDB entry)
  9. 2140118Haemophilus influenzae [TaxId:71421] [276702] (2 PDB entries)
    1. Domain for 4ore:
    2. Domain for 5dbh:
  10. 2140121Helicobacter pylori [TaxId:85962] [229231] (3 PDB entries)
    1. Domains for 4i1x:
      1. 2140124Domain d4i1xa_: 4i1x A: [307533]
        automated match to d4r2va_
      2. 2140125Domain d4i1xb_: 4i1x B: [307534]
        automated match to d4r2va_
    2. Domains for 4r2v:
      1. 2140122Domain d4r2va1: 4r2v A:2-306 [263803]
        Other proteins in same PDB: d4r2va2, d4r2vb2
      2. 2140123Domain d4r2vb1: 4r2v B:2-306 [259512]
        Other proteins in same PDB: d4r2va2, d4r2vb2
        automated match to d4i1xa_
    3. Domains for 5hbg:
      1. 2271483Domain d5hbga_: 5hbg A: [314784]
        automated match to d4i1xb_
        complexed with oas
      2. 2271815Domain d5hbgb_: 5hbg B: [315116]
        automated match to d4i1xb_
        complexed with oas
  11. 2140126Human (Homo sapiens) [TaxId:9606] [188411] (3 PDB entries)
    1. Domains for 2rkb:
      1. 2140129Domain d2rkba_: 2rkb A: [168160]
        automated match to d1pwha_
        complexed with k, plp
      2. 2140130Domain d2rkbb_: 2rkb B: [168161]
        automated match to d1pwha_
        complexed with k, plp
      3. 2140131Domain d2rkbc_: 2rkb C: [168162]
        automated match to d1pwha_
        complexed with k, plp
      4. 2140132Domain d2rkbd_: 2rkb D: [168163]
        automated match to d1pwha_
        complexed with k, plp
      5. 2140133Domain d2rkbe_: 2rkb E: [168164]
        automated match to d1pwha_
        complexed with k, plp
    2. Domain for 3l6b:
    3. Domain for 3l6r:
  12. 2140134Leishmania donovani [TaxId:5661] [195000] (1 PDB entry)
  13. 2140136Leishmania major [TaxId:5664] [234069] (1 PDB entry)
  14. 2140139Microcystis aeruginosa [TaxId:267872] [257035] (2 PDB entries)
    1. Domains for 4lma:
      1. 2140141Domain d4lmaa_: 4lma A: [257036]
        automated match to d4aira_
        complexed with mpd, plp
      2. 2140142Domain d4lmab_: 4lma B: [261782]
        automated match to d4aira_
        complexed with mpd, plp
    2. Domain for 4lmb:
  15. 2140143Mycobacterium marinum [TaxId:216594] [226125] (1 PDB entry)
  16. 2140145Mycobacterium tuberculosis [TaxId:1773] [188598] (7 PDB entries)
    1. Domain for 2q3b:
    2. Domain for 2q3d:
    3. Domains for 3dki:
      1. 2140150Domain d3dkia_: 3dki A: [174034]
        Other proteins in same PDB: d3dkib2
        automated match to d2bhsa1
        complexed with na
      2. 2140151Domain d3dkib1: 3dki B:1-316 [174035]
        Other proteins in same PDB: d3dkib2
        automated match to d2bhsa1
        complexed with na
    4. Domains for 3fgp:
      1. 2140148Domain d3fgpa_: 3fgp A: [175773]
        Other proteins in same PDB: d3fgpb2
        automated match to d2bhsa1
      2. 2140149Domain d3fgpb1: 3fgp B:1-323 [175774]
        Other proteins in same PDB: d3fgpb2
        automated match to d2bhsa1
    5. Domain for 3zei:
    6. Domain for 5i6d:
    7. Domain for 5i7a:
  17. 2140153Mycobacterium tuberculosis [TaxId:83332] [188609] (9 PDB entries)
    1. Domains for 3dwg:
      1. 2140154Domain d3dwga1: 3dwg A:1-323 [174305]
        Other proteins in same PDB: d3dwga2, d3dwgb2
        automated match to d2bhsa1
        complexed with plp
      2. 2140155Domain d3dwgb1: 3dwg B:1-323 [174306]
        Other proteins in same PDB: d3dwga2, d3dwgb2
        automated match to d2bhsa1
        complexed with plp
    2. Domains for 3dwi:
      1. 2140156Domain d3dwia_: 3dwi A: [174307]
        automated match to d2bhsa1
        complexed with plp, so4
      2. 2140157Domain d3dwib_: 3dwi B: [174308]
        automated match to d2bhsa1
        complexed with plp, so4
    3. Domains for 5i6d:
      1. 2278019Domain d5i6da_: 5i6d A: [321320]
        Other proteins in same PDB: d5i6dc2
        automated match to d3dwia_
        complexed with au6, gol, plp
      2. 2278020Domain d5i6dc1: 5i6d C:1-306 [321321]
        Other proteins in same PDB: d5i6dc2
        automated match to d3dwia_
        complexed with au6, gol, plp
      3. 2278034Domain d5i6dd_: 5i6d D: [321335]
        Other proteins in same PDB: d5i6dc2
        automated match to d3dwia_
        complexed with au6, gol, plp
    4. Domains for 5i7a:
      1. 2278083Domain d5i7aa_: 5i7a A: [321384]
        automated match to d3dwia_
        complexed with 68q, plp
      2. 2278084Domain d5i7ac_: 5i7a C: [321385]
        automated match to d3dwia_
        complexed with 68q, plp
    5. Domains for 5i7h:
      1. 2278009Domain d5i7hc_: 5i7h C: [321310]
        automated match to d3dwia_
        complexed with 68v, cl, plp
      2. 2278076Domain d5i7ha_: 5i7h A: [321377]
        automated match to d3dwia_
        complexed with 68v, cl, plp
      3. 2278106Domain d5i7hb_: 5i7h B: [321407]
        automated match to d3dwia_
        complexed with 68v, cl, plp
    6. Domains for 5i7o:
      1. 2278010Domain d5i7ob_: 5i7o B: [321311]
        automated match to d3dwia_
        complexed with plp, s16
      2. 2278036Domain d5i7oc_: 5i7o C: [321337]
        automated match to d3dwia_
        complexed with plp, s16
      3. 2278051Domain d5i7od_: 5i7o D: [321352]
        automated match to d3dwia_
        complexed with plp, s16
      4. 2278055Domain d5i7oa_: 5i7o A: [321356]
        automated match to d3dwia_
        complexed with plp, s16
    7. Domains for 5i7r:
      1. 2278005Domain d5i7rb_: 5i7r B: [321306]
        automated match to d3dwia_
        complexed with 68w, act, plp
      2. 2278011Domain d5i7ra_: 5i7r A: [321312]
        automated match to d3dwia_
        complexed with 68w, act, plp
    8. Domains for 5iw8:
      1. 2278042Domain d5iw8a_: 5iw8 A: [321343]
        automated match to d3dwia_
        complexed with 6ec, na, plp
      2. 2278127Domain d5iw8b_: 5iw8 B: [321428]
        automated match to d3dwia_
        complexed with 6ec, na, plp
    9. Domains for 5iwc:
      1. 2278052Domain d5iwca_: 5iwc A: [321353]
        automated match to d3dwia_
        complexed with 6eq, plp
      2. 2278056Domain d5iwcb_: 5iwc B: [321357]
        automated match to d3dwia_
        complexed with 6eq, plp
  18. 2140158Mycobacterium ulcerans [TaxId:362242] [226546] (1 PDB entry)
  19. 2140163Norway rat (Rattus norvegicus) [TaxId:10116] [196477] (2 PDB entries)
    1. Domains for 3hmk:
      1. 2140164Domain d3hmka_: 3hmk A: [211130]
        automated match to d3l6cb_
        complexed with mn, plp
      2. 2140165Domain d3hmkb_: 3hmk B: [211131]
        automated match to d3l6cb_
        complexed with mn, plp
    2. Domains for 3l6c:
      1. 2140166Domain d3l6ca_: 3l6c A: [199700]
        automated match to d3l6cb_
        complexed with mli, mn, plp
      2. 2140167Domain d3l6cb_: 3l6c B: [196478]
        automated match to d3l6ba_
        complexed with mli, mn, plp
  20. 2140168Rhizomucor miehei [TaxId:1031333] [311491] (1 PDB entry)
  21. 2140170Salmonella typhimurium [TaxId:90371] [187759] (13 PDB entries)
    1. Domains for 2gn0:
      1. 2140175Domain d2gn0a1: 2gn0 A:2-325 [164763]
        Other proteins in same PDB: d2gn0a2, d2gn0c2
        automated match to d1v71a1
        complexed with na
      2. 2140176Domain d2gn0b_: 2gn0 B: [164764]
        Other proteins in same PDB: d2gn0a2, d2gn0c2
        automated match to d1v71a1
        complexed with na
      3. 2140177Domain d2gn0c1: 2gn0 C:2-325 [164765]
        Other proteins in same PDB: d2gn0a2, d2gn0c2
        automated match to d1v71a1
        complexed with na
      4. 2140178Domain d2gn0d_: 2gn0 D: [164766]
        Other proteins in same PDB: d2gn0a2, d2gn0c2
        automated match to d1v71a1
        complexed with na
    2. Domains for 2gn1:
      1. 2140207Domain d2gn1a1: 2gn1 A:2-325 [164767]
        Other proteins in same PDB: d2gn1a2
        automated match to d1v71a1
        complexed with na
      2. 2140208Domain d2gn1b_: 2gn1 B: [164768]
        Other proteins in same PDB: d2gn1a2
        automated match to d1v71a1
        complexed with na
    3. Domain for 2gn2:
    4. Domains for 4d8t:
      1. 2140199Domain d4d8ta_: 4d8t A: [219575]
        automated match to d4d92a_
        complexed with ben, cl, so4
      2. 2140200Domain d4d8tb_: 4d8t B: [219576]
        automated match to d4d92c_
        complexed with ben, cl, so4
      3. 2140201Domain d4d8tc_: 4d8t C: [219577]
        automated match to d4d92b_
        complexed with ben, cl, so4
      4. 2140202Domain d4d8td_: 4d8t D: [219578]
        automated match to d4d92a_
        complexed with ben, cl, so4
    5. Domains for 4d8w:
      1. 2140187Domain d4d8wa_: 4d8w A: [219579]
        automated match to d4d92a_
        complexed with ben, cl, edo, pyr, so4
      2. 2140188Domain d4d8wb_: 4d8w B: [219580]
        automated match to d4d92a_
        complexed with ben, cl, edo, pyr, so4
      3. 2140189Domain d4d8wc_: 4d8w C: [219581]
        automated match to d4d92c_
        complexed with ben, cl, edo, pyr, so4
      4. 2140190Domain d4d8wd_: 4d8w D: [219582]
        automated match to d4d92a_
        complexed with ben, cl, edo, pyr, so4
    6. Domains for 4d92:
      1. 2140195Domain d4d92a_: 4d92 A: [195288]
        automated match to d1j0aa_
        complexed with ben, pyr, so4
      2. 2140196Domain d4d92b_: 4d92 B: [195287]
        automated match to d1j0aa_
        complexed with ben, pyr, so4
      3. 2140197Domain d4d92c_: 4d92 C: [195286]
        automated match to d1j0aa_
        complexed with ben, pyr, so4
      4. 2140198Domain d4d92d_: 4d92 D: [195289]
        automated match to d1j0aa_
        complexed with ben, pyr, so4
    7. Domains for 4d96:
      1. 2140203Domain d4d96a_: 4d96 A: [219592]
        automated match to d4d92a_
        complexed with 5pa, ben, so4
      2. 2140204Domain d4d96b_: 4d96 B: [219593]
        automated match to d4d92c_
        complexed with 5pa, ben, so4
      3. 2140205Domain d4d96c_: 4d96 C: [219594]
        automated match to d4d92c_
        complexed with 5pa, ben, so4
      4. 2140206Domain d4d96d_: 4d96 D: [219595]
        automated match to d4d92a_
        complexed with 5pa, ben, so4
    8. Domains for 4d97:
      1. 2140179Domain d4d97a_: 4d97 A: [195292]
        automated match to d1j0aa_
        complexed with ben, dsn
      2. 2140180Domain d4d97b_: 4d97 B: [195290]
        automated match to d1j0aa_
        complexed with ben, dsn
      3. 2140181Domain d4d97c_: 4d97 C: [195291]
        automated match to d1j0aa_
        complexed with ben, dsn
      4. 2140182Domain d4d97d_: 4d97 D: [201644]
        automated match to d4d97a_
        complexed with ben, dsn
    9. Domains for 4d99:
      1. 2140191Domain d4d99a_: 4d99 A: [219598]
        automated match to d4d92a_
        complexed with ben, na, ser
      2. 2140192Domain d4d99b_: 4d99 B: [219599]
        automated match to d4d92b_
        complexed with ben, na, ser
      3. 2140193Domain d4d99c_: 4d99 C: [219600]
        automated match to d4d92b_
        complexed with ben, na, ser
      4. 2140194Domain d4d99d_: 4d99 D: [219601]
        automated match to d4d92a_
        complexed with ben, na, ser
    10. Domains for 4d9b:
      1. 2140171Domain d4d9ba_: 4d9b A: [219602]
        automated match to d4d92a_
        complexed with ben, edo, pmp
      2. 2140172Domain d4d9bb_: 4d9b B: [219603]
        automated match to d4d92a_
        complexed with ben, edo, pmp
      3. 2140173Domain d4d9bc_: 4d9b C: [219604]
        automated match to d4d92c_
        complexed with ben, edo, pmp
      4. 2140174Domain d4d9bd_: 4d9b D: [219605]
        automated match to d4d92a_
        complexed with ben, edo, pmp
    11. Domains for 4d9c:
      1. 2140183Domain d4d9ca_: 4d9c A: [219606]
        automated match to d4d92a_
        complexed with ben, pmp
      2. 2140184Domain d4d9cb_: 4d9c B: [219607]
        automated match to d4d92b_
        complexed with ben, pmp
      3. 2140185Domain d4d9cc_: 4d9c C: [219608]
        automated match to d4d92c_
        complexed with ben, pmp
      4. 2140186Domain d4d9cd_: 4d9c D: [219609]
        automated match to d4d92a_
        complexed with ben, pmp
    12. Domains for 4d9e:
      1. 2140210Domain d4d9ea_: 4d9e A: [219610]
        automated match to d4d92a_
        complexed with ben, lcs
      2. 2140211Domain d4d9eb_: 4d9e B: [219611]
        automated match to d4d92b_
        complexed with ben, lcs
      3. 2140212Domain d4d9ec_: 4d9e C: [219612]
        automated match to d4d92b_
        complexed with ben, lcs
      4. 2140213Domain d4d9ed_: 4d9e D: [219613]
        automated match to d4d92a_
        complexed with ben, lcs
    13. Domains for 4d9f:
      1. 2140214Domain d4d9fa_: 4d9f A: [219614]
        automated match to d4d92a_
        complexed with ben, dcs
      2. 2140215Domain d4d9fb_: 4d9f B: [219615]
        automated match to d4d92b_
        complexed with ben, dcs
      3. 2140216Domain d4d9fc_: 4d9f C: [219616]
        automated match to d4d92c_
        complexed with ben, dcs
      4. 2140217Domain d4d9fd_: 4d9f D: [219617]
        automated match to d4d92a_
        complexed with ben, dcs
  22. 2140218Soybean (Glycine max) [TaxId:3847] [226469] (2 PDB entries)
    1. Domains for 3vbe:
      1. 2140225Domain d3vbea_: 3vbe A: [217743]
        Other proteins in same PDB: d3vbec2
        automated match to d1oasa_
        complexed with plp
      2. 2140226Domain d3vbeb_: 3vbe B: [217744]
        Other proteins in same PDB: d3vbec2
        automated match to d1d6sa_
        complexed with plp
      3. 2140227Domain d3vbec1: 3vbe C:50-372 [217745]
        Other proteins in same PDB: d3vbec2
        automated match to d1oasa_
        complexed with plp
      4. 2140228Domain d3vbed_: 3vbe D: [217746]
        Other proteins in same PDB: d3vbec2
        automated match to d1oasa_
        complexed with plp
    2. Domains for 3vc3:
      1. 2140219Domain d3vc3a_: 3vc3 A: [217756]
        automated match to d1oasa_
        complexed with c6p; mutant
      2. 2140220Domain d3vc3b_: 3vc3 B: [217757]
        automated match to d1d6sa_
        complexed with c6p; mutant
      3. 2140221Domain d3vc3c_: 3vc3 C: [217758]
        automated match to d1oasa_
        complexed with c6p; mutant
      4. 2140222Domain d3vc3d_: 3vc3 D: [217759]
        automated match to d1oasa_
        complexed with c6p; mutant
      5. 2140223Domain d3vc3e_: 3vc3 E: [217760]
        automated match to d1oasa_
        complexed with c6p; mutant
      6. 2140224Domain d3vc3f_: 3vc3 F: [217761]
        automated match to d1oasa_
        complexed with c6p; mutant
  23. 2140229Streptomyces lavendulae [TaxId:1914] [275483] (2 PDB entries)
    1. Domains for 3x43:
      1. 2140232Domain d3x43a_: 3x43 A: [275485]
        automated match to d4ofxa_
        complexed with plp
      2. 2140233Domain d3x43b_: 3x43 B: [275484]
        automated match to d4ofxa_
        complexed with plp
      3. 2140234Domain d3x43c_: 3x43 C: [275486]
        automated match to d4ofxa_
        complexed with plp
      4. 2140235Domain d3x43d_: 3x43 D: [275488]
        automated match to d4ofxa_
        complexed with plp
      5. 2140236Domain d3x43e_: 3x43 E: [275489]
        automated match to d4ofxa_
        complexed with plp
      6. 2140237Domain d3x43f_: 3x43 F: [275487]
        automated match to d4ofxa_
        complexed with plp
      7. 2140238Domain d3x43g_: 3x43 G: [275490]
        automated match to d4ofxa_
        complexed with plp
      8. 2140239Domain d3x43h_: 3x43 H: [275491]
        automated match to d4ofxa_
        complexed with plp
    2. Domains for 3x44:
      1. 2140230Domain d3x44a_: 3x44 A: [275492]
        automated match to d4ofxa_
        complexed with pus; mutant
      2. 2140231Domain d3x44b_: 3x44 B: [275493]
        automated match to d4ofxa_
        complexed with pus; mutant
  24. 2140240Thale cress (Arabidopsis thaliana) [TaxId:3702] [256179] (1 PDB entry)
  25. 2269533Zea mays [TaxId:4577] [312838] (1 PDB entry)
  26. 2270006Staphylococcus aureus [TaxId:426430] [313311] (4 PDB entries)
    1. Domain for 5d84:
    2. Domain for 5d85:
    3. Domain for 5d86:
    4. Domain for 5d87:
  27. 2276062Streptococcus pneumoniae [TaxId:170187] [319363] (1 PDB entry)
  28. 2283544Lactobacillus plantarum [TaxId:220668] [326845] (1 PDB entry)

More info for Protein automated matches from c.79.1.0: automated matches

Timeline for Protein automated matches from c.79.1.0: automated matches: