Species:

1. Bacillus cereus [TaxId:222523] [188845] (1 PDB entry)

   • Domains for 3grd:

     1. Domain d3grda_: 3grd A: [176933] automated match to d3ec9a1 complexed with act, na

     2. Domain d3grdb_: 3grd B: [176934] automated match to d3ec9a1 complexed with act, na

2. Bartonella birtlesii [TaxId:111504] [256329] (1 PDB entry)

   • Domain for 4jf8:

     • Domain d4jf8a_: 4jf8 A: [252920] automated match to d2bhma1 complexed with edo

3. Bartonella grahamii [TaxId:634504] [256352] (2 PDB entries)

   1. Domain for 4kz1:

      • Domain d4kz1a_: 4kz1 A: [253472] automated match to d2bhma1

   2. Domains for 4nhf:

      1. Domain d4nhfa_: 4nhf A: [253953] automated match to d2bhma1 complexed with ca

      2. Domain d4nhfb_: 4nhf B: [253954] automated match to d2bhma1 complexed with ca

      3. Domain d4nhfc_: 4nhf C: [253955] automated match to d2bhma1 complexed with ca

      4. Domain d4nhfd_: 4nhf D: [253956] automated match to d2bhma1 complexed with ca

      5. Domain d4nhfe_: 4nhf E: [253957] automated match to d2bhma1 complexed with ca

      6. Domain d4nhff_: 4nhf F: [253958] automated match to d2bhma1 complexed with ca

4. Bartonella quintana [TaxId:1134506] [256360] (1 PDB entry)

   • Domain for 4lso:

     • Domain d4lsoa_: 4lso A: [253685] automated match to d2bhma1

5. Bartonella tribocorum [TaxId:382640] [256364] (1 PDB entry)

   • Domain for 4mei:

     • Domain d4meia_: 4mei A: [253796] automated match to d2bhma1

6. Burkholderia xenovorans [TaxId:266265] [188714] (1 PDB entry)

   • Domains for 3fgy:

     1. Domain d3fgya_: 3fgy A: [175776] automated match to d3ebta1 complexed with peg, unl

     2. Domain d3fgyb_: 3fgy B: [175777] automated match to d3ebta1 complexed with peg, unl

7. Cryptosporidium parvum [TaxId:5807] [187280] (1 PDB entry)

   • Domain for 1zo2:

     • Domain d1zo2b_: 1zo2 B: [146022] Other proteins in same PDB: d1zo2a1 automated match to d1gy7b_

8. Fruit fly (Drosophila melanogaster) [TaxId:7227] [195496] (1 PDB entry)

   • Domains for 3ujm:

     1. Domain d3ujma_: 3ujm A: [200990] automated match to d3ujmb_ complexed with epe

     2. Domain d3ujmb_: 3ujm B: [195497] automated match to d3q90b_ complexed with epe

9. Human (Homo sapiens) [TaxId:9606] [189642] (3 PDB entries)

   1. Domains for 3q90:

      1. Domain d3q90a_: 3q90 A: [184278] automated match to d1zo2a1

      2. Domain d3q90b_: 3q90 B: [184279] automated match to d1zo2a1

   2. Domains for 4fcj:

      1. Domain d4fcja_: 4fcj A: [221143] automated match to d4fcma_ complexed with gol

      2. Domain d4fcjb_: 4fcj B: [221144] automated match to d4fcma_ complexed with gol

   3. Domains for 4fcm:

      1. Domain d4fcma_: 4fcm A: [197234] automated match to d3q90b_ complexed with po4

      2. Domain d4fcmb_: 4fcm B: [202028] automated match to d4fcma_ complexed with po4

10. Methylobacillus flagellatus [TaxId:265072] [188697] (1 PDB entry)

    • Domains for 3duk:

      1. Domain d3duka_: 3duk A: [174238] automated match to d3blza1 complexed with cl, edo

      2. Domain d3dukb_: 3duk B: [174239] automated match to d3blza1 complexed with cl, edo

      3. Domain d3dukc_: 3duk C: [174240] automated match to d3blza1 complexed with cl, edo

      4. Domain d3dukd_: 3duk D: [174241] automated match to d3blza1 complexed with cl, edo

      5. Domain d3duke_: 3duk E: [174242] automated match to d3blza1 complexed with cl, edo

      6. Domain d3dukf_: 3duk F: [174243] automated match to d3blza1 complexed with cl, edo

11. Nematode (Caenorhabditis elegans) [TaxId:6239] [187281] (2 PDB entries)

    1. Domains for 2f86:

       1. Domain d2f86d_: 2f86 D: [146999] Other proteins in same PDB: d2f86b1 automated match to d1hkxd_

       2. Domain d2f86f_: 2f86 F: [147000] Other proteins in same PDB: d2f86b1 automated match to d1hkxd_

       3. Domain d2f86h_: 2f86 H: [147001] Other proteins in same PDB: d2f86b1 automated match to d1hkxd_

       4. Domain d2f86j_: 2f86 J: [147002] Other proteins in same PDB: d2f86b1 automated match to d1hkxd_

       5. Domain d2f86l_: 2f86 L: [147003] Other proteins in same PDB: d2f86b1 automated match to d1hkxd_

       6. Domain d2f86n_: 2f86 N: [147004] Other proteins in same PDB: d2f86b1 automated match to d1hkxd_

    2. Domain for 3nv0:

       • Domain d3nv0b_: 3nv0 B: [214058] automated match to d1jkga_ protein/RNA complex; complexed with bme, edo, na, peg; mutant

12. Rhodococcus sp. [TaxId:92694] [186958] (1 PDB entry)

    • Domains for 2b1x:

      1. Domain d2b1xd_: 2b1x D: [127680] Other proteins in same PDB: d2b1xa1, d2b1xa2, d2b1xb1, d2b1xc1, d2b1xc2, d2b1xe1, d2b1xe2 automated match to d1ulid_ complexed with fe, fes, mpd

      2. Domain d2b1xf_: 2b1x F: [127683] Other proteins in same PDB: d2b1xa1, d2b1xa2, d2b1xb1, d2b1xc1, d2b1xc2, d2b1xe1, d2b1xe2 automated match to d1ulid_ complexed with fe, fes, mpd

13. Rhodospirillum rubrum [TaxId:269796] [188772] (1 PDB entry)

    • Domain for 3fsd:

      • Domain d3fsda_: 3fsd A: [176024] automated match to d2r4ic1 complexed with edo, unl

14. Sphingobium yanoikuyae [TaxId:13690] [187741] (2 PDB entries)

    1. Domains for 2gbw:

       1. Domain d2gbwb_: 2gbw B: [164658] Other proteins in same PDB: d2gbwa1, d2gbwa2, d2gbwc1, d2gbwc2, d2gbwe1, d2gbwe2 automated match to d1ulid_ complexed with fe, fes, oxy

       2. Domain d2gbwd_: 2gbw D: [164659] Other proteins in same PDB: d2gbwa1, d2gbwa2, d2gbwc1, d2gbwc2, d2gbwe1, d2gbwe2 automated match to d1ulid_ complexed with fe, fes, oxy

       3. Domain d2gbwf_: 2gbw F: [164660] Other proteins in same PDB: d2gbwa1, d2gbwa2, d2gbwc1, d2gbwc2, d2gbwe1, d2gbwe2 automated match to d1ulid_ complexed with fe, fes, oxy

    2. Domains for 2gbx:

       1. Domain d2gbxb_: 2gbx B: [164661] Other proteins in same PDB: d2gbxa1, d2gbxa2, d2gbxc1, d2gbxc2, d2gbxe1, d2gbxe2 automated match to d1ulid_ complexed with bnl, fe, fes, zn

       2. Domain d2gbxd_: 2gbx D: [164662] Other proteins in same PDB: d2gbxa1, d2gbxa2, d2gbxc1, d2gbxc2, d2gbxe1, d2gbxe2 automated match to d1ulid_ complexed with bnl, fe, fes, zn

       3. Domain d2gbxf_: 2gbx F: [164663] Other proteins in same PDB: d2gbxa1, d2gbxa2, d2gbxc1, d2gbxc2, d2gbxe1, d2gbxe2 automated match to d1ulid_ complexed with bnl, fe, fes, zn

15. Sphingomonas sp. [TaxId:279135] [187555] (1 PDB entry)

    • Domains for 2ckf:

      1. Domain d2ckfb_: 2ckf B: [163426] Other proteins in same PDB: d2ckfa1, d2ckfa2, d2ckfc1, d2ckfc2, d2ckfe1, d2ckfe2 automated match to d1ulid_ complexed with fe, fes

      2. Domain d2ckfd_: 2ckf D: [163427] Other proteins in same PDB: d2ckfa1, d2ckfa2, d2ckfc1, d2ckfc2, d2ckfe1, d2ckfe2 automated match to d1ulid_ complexed with fe, fes

      3. Domain d2ckff_: 2ckf F: [163428] Other proteins in same PDB: d2ckfa1, d2ckfa2, d2ckfc1, d2ckfc2, d2ckfe1, d2ckfe2 automated match to d1ulid_ complexed with fe, fes

16. Staphylococcus aureus [TaxId:1280] [256158] (3 PDB entries)

    1. Domains for 3zg5:

       1. Domain d3zg5a1: 3zg5 A:27-138 [250785] Other proteins in same PDB: d3zg5a2, d3zg5a3, d3zg5b2, d3zg5b3 automated match to d1vqqa1 complexed with cd, cl

       2. Domain d3zg5b1: 3zg5 B:27-138 [250788] Other proteins in same PDB: d3zg5a2, d3zg5a3, d3zg5b2, d3zg5b3 automated match to d1vqqa1 complexed with cd, cl

    2. Domains for 4bl2:

       1. Domain d4bl2a1: 4bl2 A:26-138 [256551] Other proteins in same PDB: d4bl2a2, d4bl2a3, d4bl2b2, d4bl2b3 automated match to d1vqqa1 complexed with cd, cl; mutant

       2. Domain d4bl2b1: 4bl2 B:27-138 [256554] Other proteins in same PDB: d4bl2a2, d4bl2a3, d4bl2b2, d4bl2b3 automated match to d1vqqa1 complexed with cd, cl; mutant

    3. Domains for 4bl3:

       1. Domain d4bl3a1: 4bl3 A:26-138 [256557] Other proteins in same PDB: d4bl3a2, d4bl3a3, d4bl3b2, d4bl3b3 automated match to d1vqqa1 complexed with cd, cl, mur; mutant

       2. Domain d4bl3b1: 4bl3 B:26-138 [259319] Other proteins in same PDB: d4bl3a2, d4bl3a3, d4bl3b2, d4bl3b3 automated match to d1vqqa1 complexed with cd, cl, mur; mutant

17. Staphylococcus aureus [TaxId:158878] [256155] (4 PDB entries)

    1. Domains for 3zfz:

       1. Domain d3zfza1: 3zfz A:27-138 [250773] Other proteins in same PDB: d3zfza2, d3zfza3, d3zfzb2, d3zfzb3 automated match to d1vqqa1 complexed with 1w8, ai8, cd, cl, mur

       2. Domain d3zfzb1: 3zfz B:27-138 [250776] Other proteins in same PDB: d3zfza2, d3zfza3, d3zfzb2, d3zfzb3 automated match to d1vqqa1 complexed with 1w8, ai8, cd, cl, mur

    2. Domains for 3zg0:

       1. Domain d3zg0a1: 3zg0 A:27-138 [250779] Other proteins in same PDB: d3zg0a2, d3zg0a3, d3zg0b2, d3zg0b3 automated match to d1vqqa1 complexed with 1w8, ai8, cd, cl, mur

       2. Domain d3zg0b1: 3zg0 B:27-138 [250782] Other proteins in same PDB: d3zg0a2, d3zg0a3, d3zg0b2, d3zg0b3 automated match to d1vqqa1 complexed with 1w8, ai8, cd, cl, mur

    3. Domains for 4cjn:

       1. Domain d4cjna1: 4cjn A:27-138 [269620] Other proteins in same PDB: d4cjna2, d4cjna3, d4cjnb2, d4cjnb3 automated match to d1vqqa1 complexed with cd, cl, mur, qnz

       2. Domain d4cjnb1: 4cjn B:27-138 [269619] Other proteins in same PDB: d4cjna2, d4cjna3, d4cjnb2, d4cjnb3 automated match to d1vqqa1 complexed with cd, cl, mur, qnz

    4. Domains for 4cpk:

       1. Domain d4cpka1: 4cpk A:27-138 [262606] Other proteins in same PDB: d4cpka2, d4cpka3, d4cpkb2, d4cpkb3 automated match to d1vqqa1 complexed with cd, cl, mur; mutant

       2. Domain d4cpkb1: 4cpk B:27-138 [259337] Other proteins in same PDB: d4cpka2, d4cpka3, d4cpkb2, d4cpkb3 automated match to d1vqqa1 complexed with cd, cl, mur; mutant

18. Streptomyces albus [TaxId:1888] [277508] (1 PDB entry)

    • Domains for 5cxo:

      1. Domain d5cxoa_: 5cxo A: [277509] automated match to d1ocva_ complexed with p6g

      2. Domain d5cxob_: 5cxo B: [277510] automated match to d1ocva_ complexed with p6g

19. Synechocystis sp. [TaxId:1111708] [275032] (1 PDB entry)

    • Domain for 4xb5:

      • Domain d4xb5a2: 4xb5 A:174-314 [275033] Other proteins in same PDB: d4xb5a1 automated match to d1m98a2 complexed with 45d, gol

20. Synechocystis sp. [TaxId:1148] [225878] (3 PDB entries)

    1. Domains for 3mg1:

       1. Domain d3mg1a2: 3mg1 A:174-311 [213238] Other proteins in same PDB: d3mg1a1, d3mg1b1 automated match to d1m98a2 complexed with ech, gol

       2. Domain d3mg1b2: 3mg1 B:174-312 [213240] Other proteins in same PDB: d3mg1a1, d3mg1b1 automated match to d1m98a2 complexed with ech, gol

    2. Domains for 3mg2:

       1. Domain d3mg2a2: 3mg2 A:174-312 [213242] Other proteins in same PDB: d3mg2a1, d3mg2b1 automated match to d1m98a2 complexed with ech; mutant

       2. Domain d3mg2b2: 3mg2 B:174-312 [213244] Other proteins in same PDB: d3mg2a1, d3mg2b1 automated match to d1m98a2 complexed with ech; mutant

    3. Domains for 3mg3:

       1. Domain d3mg3a2: 3mg3 A:174-312 [213246] Other proteins in same PDB: d3mg3a1, d3mg3b1 automated match to d1m98a2 complexed with ech, gol; mutant

       2. Domain d3mg3b2: 3mg3 B:174-311 [213248] Other proteins in same PDB: d3mg3a1, d3mg3b1 automated match to d1m98a2 complexed with ech, gol; mutant

21. Xanthomonas campestris [TaxId:340] [225616] (1 PDB entry)

    • Domain for 3g8z:

      • Domain d3g8za_: 3g8z A: [210457] automated match to d1tuha_ complexed with cl, gol

More info for Protein automated matches from d.17.4.0: automated matches

Timeline for Protein automated matches from d.17.4.0: automated matches:

• Protein automated matches from d.17.4.0: automated matches first appeared in SCOPe 2.01
  
• Protein automated matches from d.17.4.0: automated matches appears in SCOPe 2.04
  
• Protein automated matches from d.17.4.0: automated matches appears in SCOPe 2.06
  
• Protein automated matches from d.17.4.0: automated matches appears in the current release, SCOPe 2.08