Lineage for Protein: automated matches

  1. Root: SCOPe 2.04
  2. 1631855Class d: Alpha and beta proteins (a+b) [53931] (380 folds)
  3. 1640316Fold d.17: Cystatin-like [54402] (7 superfamilies)
    Core: alpha-beta(4); helix packs against coiled antiparallel beta-sheet
  4. 1640820Superfamily d.17.4: NTF2-like [54427] (31 families) (S)
    has a beta-alpha(2)-beta insertion after the main helix
  5. 1641515Family d.17.4.0: automated matches [191337] (1 protein)
    not a true family
  6. 1641516Protein automated matches [190205] (19 species)
    not a true protein

Species:

  1. 1641517Bacillus cereus [TaxId:222523] [188845] (1 PDB entry)
  2. 1641520Bartonella birtlesii [TaxId:111504] [256329] (1 PDB entry)
  3. 1641522Bartonella grahamii [TaxId:634504] [256352] (2 PDB entries)
    1. Domain for 4kz1:
    2. Domains for 4nhf:
      1. 1641523Domain d4nhfa_: 4nhf A: [253953]
        automated match to d2bhma1
        complexed with ca
      2. 1641524Domain d4nhfb_: 4nhf B: [253954]
        automated match to d2bhma1
        complexed with ca
      3. 1641525Domain d4nhfc_: 4nhf C: [253955]
        automated match to d2bhma1
        complexed with ca
      4. 1641526Domain d4nhfd_: 4nhf D: [253956]
        automated match to d2bhma1
        complexed with ca
      5. 1641527Domain d4nhfe_: 4nhf E: [253957]
        automated match to d2bhma1
        complexed with ca
      6. 1641528Domain d4nhff_: 4nhf F: [253958]
        automated match to d2bhma1
        complexed with ca
  4. 1641530Bartonella quintana [TaxId:1134506] [256360] (1 PDB entry)
  5. 1641532Bartonella tribocorum [TaxId:382640] [256364] (1 PDB entry)
  6. 1641534Burkholderia xenovorans [TaxId:266265] [188714] (1 PDB entry)
  7. 1641537Cryptosporidium parvum [TaxId:5807] [187280] (1 PDB entry)
  8. 1641539Fruit fly (Drosophila melanogaster) [TaxId:7227] [195496] (1 PDB entry)
  9. 1641542Human (Homo sapiens) [TaxId:9606] [189642] (3 PDB entries)
    1. Domains for 3q90:
      1. 1641543Domain d3q90a_: 3q90 A: [184278]
        automated match to d1zo2a1
      2. 1641544Domain d3q90b_: 3q90 B: [184279]
        automated match to d1zo2a1
    2. Domains for 4fcj:
      1. 1641545Domain d4fcja_: 4fcj A: [221143]
        automated match to d4fcma_
        complexed with gol
      2. 1641546Domain d4fcjb_: 4fcj B: [221144]
        automated match to d4fcma_
        complexed with gol
    3. Domains for 4fcm:
      1. 1641547Domain d4fcma_: 4fcm A: [197234]
        automated match to d3q90b_
        complexed with po4
      2. 1641548Domain d4fcmb_: 4fcm B: [202028]
        automated match to d4fcma_
        complexed with po4
  10. 1641549Methylobacillus flagellatus [TaxId:265072] [188697] (1 PDB entry)
  11. 1641556Nematode (Caenorhabditis elegans) [TaxId:6239] [187281] (2 PDB entries)
    1. Domains for 2f86:
      1. 1641558Domain d2f86d_: 2f86 D: [146999]
        Other proteins in same PDB: d2f86b1
        automated match to d1hkxd_
      2. 1641559Domain d2f86f_: 2f86 F: [147000]
        Other proteins in same PDB: d2f86b1
        automated match to d1hkxd_
      3. 1641560Domain d2f86h_: 2f86 H: [147001]
        Other proteins in same PDB: d2f86b1
        automated match to d1hkxd_
      4. 1641561Domain d2f86j_: 2f86 J: [147002]
        Other proteins in same PDB: d2f86b1
        automated match to d1hkxd_
      5. 1641562Domain d2f86l_: 2f86 L: [147003]
        Other proteins in same PDB: d2f86b1
        automated match to d1hkxd_
      6. 1641563Domain d2f86n_: 2f86 N: [147004]
        Other proteins in same PDB: d2f86b1
        automated match to d1hkxd_
    2. Domain for 3nv0:
      • 1641557Domain d3nv0b_: 3nv0 B: [214058]
        automated match to d1jkga_
        protein/RNA complex; complexed with bme, edo, na, peg; mutant
  12. 1641564Rhodococcus sp. [TaxId:92694] [186958] (1 PDB entry)
  13. 1641567Rhodospirillum rubrum [TaxId:269796] [188772] (1 PDB entry)
  14. 1641569Sphingobium yanoikuyae [TaxId:13690] [187741] (2 PDB entries)
    1. Domains for 2gbw:
      1. 1641570Domain d2gbwb_: 2gbw B: [164658]
        Other proteins in same PDB: d2gbwa1, d2gbwa2, d2gbwc1, d2gbwc2, d2gbwe1, d2gbwe2
        automated match to d1ulid_
        complexed with fe, fes, oxy
      2. 1641571Domain d2gbwd_: 2gbw D: [164659]
        Other proteins in same PDB: d2gbwa1, d2gbwa2, d2gbwc1, d2gbwc2, d2gbwe1, d2gbwe2
        automated match to d1ulid_
        complexed with fe, fes, oxy
      3. 1641572Domain d2gbwf_: 2gbw F: [164660]
        Other proteins in same PDB: d2gbwa1, d2gbwa2, d2gbwc1, d2gbwc2, d2gbwe1, d2gbwe2
        automated match to d1ulid_
        complexed with fe, fes, oxy
    2. Domains for 2gbx:
      1. 1641573Domain d2gbxb_: 2gbx B: [164661]
        Other proteins in same PDB: d2gbxa1, d2gbxa2, d2gbxc1, d2gbxc2, d2gbxe1, d2gbxe2
        automated match to d1ulid_
        complexed with bnl, fe, fes, zn
      2. 1641574Domain d2gbxd_: 2gbx D: [164662]
        Other proteins in same PDB: d2gbxa1, d2gbxa2, d2gbxc1, d2gbxc2, d2gbxe1, d2gbxe2
        automated match to d1ulid_
        complexed with bnl, fe, fes, zn
      3. 1641575Domain d2gbxf_: 2gbx F: [164663]
        Other proteins in same PDB: d2gbxa1, d2gbxa2, d2gbxc1, d2gbxc2, d2gbxe1, d2gbxe2
        automated match to d1ulid_
        complexed with bnl, fe, fes, zn
  15. 1641576Sphingomonas sp. [TaxId:279135] [187555] (1 PDB entry)
  16. 1641580Staphylococcus aureus [TaxId:1280] [256158] (3 PDB entries)
    1. Domains for 3zg5:
      1. 1641581Domain d3zg5a1: 3zg5 A:27-138 [250785]
        Other proteins in same PDB: d3zg5a2, d3zg5a3, d3zg5b2, d3zg5b3
        automated match to d1vqqa1
        complexed with cd, cl
      2. 1641582Domain d3zg5b1: 3zg5 B:27-138 [250788]
        Other proteins in same PDB: d3zg5a2, d3zg5a3, d3zg5b2, d3zg5b3
        automated match to d1vqqa1
        complexed with cd, cl
    2. Domains for 4bl2:
      1. 1641583Domain d4bl2a1: 4bl2 A:26-138 [256551]
        Other proteins in same PDB: d4bl2a2, d4bl2a3, d4bl2b2, d4bl2b3
        automated match to d1vqqa1
        complexed with cd, cl; mutant
      2. 1641584Domain d4bl2b1: 4bl2 B:27-138 [256554]
        Other proteins in same PDB: d4bl2a2, d4bl2a3, d4bl2b2, d4bl2b3
        automated match to d1vqqa1
        complexed with cd, cl; mutant
    3. Domains for 4bl3:
      1. 1641585Domain d4bl3a1: 4bl3 A:26-138 [256557]
        Other proteins in same PDB: d4bl3a2, d4bl3a3
        automated match to d1vqqa1
        complexed with cd, cl, mur; mutant
      2. 1641586Domain d4bl3b1: 4bl3 B:26-138 [259319]
        Other proteins in same PDB: d4bl3b2, d4bl3b3
        automated match to d1vqqa1
        complexed with cd, cl, mur; mutant
  17. 1641587Staphylococcus aureus [TaxId:158878] [256155] (3 PDB entries)
    1. Domains for 3zfz:
      1. 1641588Domain d3zfza1: 3zfz A:27-138 [250773]
        Other proteins in same PDB: d3zfza2, d3zfza3, d3zfzb2, d3zfzb3
        automated match to d1vqqa1
        complexed with 1w8, ai8, cd, cl, mur
      2. 1641589Domain d3zfzb1: 3zfz B:27-138 [250776]
        Other proteins in same PDB: d3zfza2, d3zfza3, d3zfzb2, d3zfzb3
        automated match to d1vqqa1
        complexed with 1w8, ai8, cd, cl, mur
    2. Domains for 3zg0:
      1. 1641591Domain d3zg0a1: 3zg0 A:27-138 [250779]
        Other proteins in same PDB: d3zg0a2, d3zg0a3, d3zg0b2, d3zg0b3
        automated match to d1vqqa1
        complexed with 1w8, ai8, cd, cl, mur
      2. 1641592Domain d3zg0b1: 3zg0 B:27-138 [250782]
        Other proteins in same PDB: d3zg0a2, d3zg0a3, d3zg0b2, d3zg0b3
        automated match to d1vqqa1
        complexed with 1w8, ai8, cd, cl, mur
    3. Domain for 4cpk:
  18. 1641593Synechocystis sp. [TaxId:1148] [225878] (3 PDB entries)
    1. Domains for 3mg1:
      1. 1641596Domain d3mg1a2: 3mg1 A:174-311 [213238]
        Other proteins in same PDB: d3mg1a1, d3mg1b1
        automated match to d1m98a2
        complexed with ech, gol
      2. 1641597Domain d3mg1b2: 3mg1 B:174-312 [213240]
        Other proteins in same PDB: d3mg1a1, d3mg1b1
        automated match to d1m98a2
        complexed with ech, gol
    2. Domains for 3mg2:
      1. 1641598Domain d3mg2a2: 3mg2 A:174-312 [213242]
        Other proteins in same PDB: d3mg2a1, d3mg2b1
        automated match to d1m98a2
        complexed with ech; mutant
      2. 1641599Domain d3mg2b2: 3mg2 B:174-312 [213244]
        Other proteins in same PDB: d3mg2a1, d3mg2b1
        automated match to d1m98a2
        complexed with ech; mutant
    3. Domains for 3mg3:
      1. 1641594Domain d3mg3a2: 3mg3 A:174-312 [213246]
        Other proteins in same PDB: d3mg3a1, d3mg3b1
        automated match to d1m98a2
        complexed with ech, gol; mutant
      2. 1641595Domain d3mg3b2: 3mg3 B:174-311 [213248]
        Other proteins in same PDB: d3mg3a1, d3mg3b1
        automated match to d1m98a2
        complexed with ech, gol; mutant
  19. 1641600Xanthomonas campestris [TaxId:340] [225616] (1 PDB entry)

More info for Protein automated matches from d.17.4.0: automated matches

Timeline for Protein automated matches from d.17.4.0: automated matches: