SCOPe Funding Alert: SCOPe support from the NIH ended in April 2016. John-Marc Chandonia is the primary maintainer and has continued to develop SCOPe using vacation time. Three proposals to the NIH for continued funding have been unsuccessful. If our current NIH proposal is not funded, SCOPe will shut down permanently in Summer 2017 as Dr. Chandonia will need to seek a new position.

Lineage for Protein: automated matches

  1. Root: SCOPe 2.06
  2. 2152203Class d: Alpha and beta proteins (a+b) [53931] (385 folds)
  3. 2161468Fold d.17: Cystatin-like [54402] (7 superfamilies)
    Core: alpha-beta(4); helix packs against coiled antiparallel beta-sheet
  4. 2161993Superfamily d.17.4: NTF2-like [54427] (31 families) (S)
    has a beta-alpha(2)-beta insertion after the main helix
  5. 2162741Family d.17.4.0: automated matches [191337] (1 protein)
    not a true family
  6. 2162742Protein automated matches [190205] (26 species)
    not a true protein

Species:

  1. 2162743Bacillus cereus [TaxId:222523] [188845] (1 PDB entry)
  2. 2162746Bartonella birtlesii [TaxId:111504] [256329] (1 PDB entry)
  3. 2162748Bartonella grahamii [TaxId:634504] [256352] (2 PDB entries)
    1. Domain for 4kz1:
    2. Domains for 4nhf:
      1. 2162749Domain d4nhfa_: 4nhf A: [253953]
        automated match to d2bhma1
        complexed with ca
      2. 2162750Domain d4nhfb_: 4nhf B: [253954]
        automated match to d2bhma1
        complexed with ca
      3. 2162751Domain d4nhfc_: 4nhf C: [253955]
        automated match to d2bhma1
        complexed with ca
      4. 2162752Domain d4nhfd_: 4nhf D: [253956]
        automated match to d2bhma1
        complexed with ca
      5. 2162753Domain d4nhfe_: 4nhf E: [253957]
        automated match to d2bhma1
        complexed with ca
      6. 2162754Domain d4nhff_: 4nhf F: [253958]
        automated match to d2bhma1
        complexed with ca
  4. 2162756Bartonella quintana [TaxId:1134506] [256360] (1 PDB entry)
  5. 2162758Bartonella tribocorum [TaxId:382640] [256364] (1 PDB entry)
  6. 2162760Burkholderia xenovorans [TaxId:266265] [188714] (1 PDB entry)
  7. 2162763Cryptosporidium parvum [TaxId:5807] [187280] (1 PDB entry)
  8. 2162765Fruit fly (Drosophila melanogaster) [TaxId:7227] [195496] (1 PDB entry)
  9. 2162768Human (Homo sapiens) [TaxId:9606] [189642] (4 PDB entries)
    1. Domains for 3q90:
      1. 2162769Domain d3q90a_: 3q90 A: [184278]
        Other proteins in same PDB: d3q90b2
        automated match to d1zo2a1
      2. 2162770Domain d3q90b1: 3q90 B:1-139 [184279]
        Other proteins in same PDB: d3q90b2
        automated match to d1zo2a1
    2. Domains for 4fcj:
      1. 2162771Domain d4fcja_: 4fcj A: [221143]
        Other proteins in same PDB: d4fcjb2
        automated match to d4fcma_
        complexed with gol
      2. 2162772Domain d4fcjb1: 4fcj B:1-138 [221144]
        Other proteins in same PDB: d4fcjb2
        automated match to d4fcma_
        complexed with gol
    3. Domains for 4fcm:
      1. 2162773Domain d4fcma_: 4fcm A: [197234]
        automated match to d3q90b_
        complexed with po4
      2. 2162774Domain d4fcmb_: 4fcm B: [202028]
        automated match to d4fcma_
        complexed with po4
    4. Domains for 5fw5:
      1. 2276448Domain d5fw5b_: 5fw5 B: [319749]
        Other proteins in same PDB: d5fw5a2
        automated match to d4fcja_
        complexed with act, gol, k, so4
      2. 2276549Domain d5fw5a1: 5fw5 A:1-139 [319850]
        Other proteins in same PDB: d5fw5a2
        automated match to d4fcja_
        complexed with act, gol, k, so4
  10. 2162775Methylobacillus flagellatus [TaxId:265072] [188697] (1 PDB entry)
  11. 2162782Nematode (Caenorhabditis elegans) [TaxId:6239] [187281] (2 PDB entries)
    1. Domains for 2f86:
      1. 2162784Domain d2f86d_: 2f86 D: [146999]
        Other proteins in same PDB: d2f86b1
        automated match to d1hkxd_
      2. 2162785Domain d2f86f_: 2f86 F: [147000]
        Other proteins in same PDB: d2f86b1
        automated match to d1hkxd_
      3. 2162786Domain d2f86h_: 2f86 H: [147001]
        Other proteins in same PDB: d2f86b1
        automated match to d1hkxd_
      4. 2162787Domain d2f86j_: 2f86 J: [147002]
        Other proteins in same PDB: d2f86b1
        automated match to d1hkxd_
      5. 2162788Domain d2f86l_: 2f86 L: [147003]
        Other proteins in same PDB: d2f86b1
        automated match to d1hkxd_
      6. 2162789Domain d2f86n_: 2f86 N: [147004]
        Other proteins in same PDB: d2f86b1
        automated match to d1hkxd_
    2. Domain for 3nv0:
      • 2162783Domain d3nv0b_: 3nv0 B: [214058]
        automated match to d1jkga_
        protein/RNA complex; complexed with bme, edo, na, peg; mutant
  12. 2162790Rhodococcus sp. [TaxId:92694] [186958] (1 PDB entry)
  13. 2162793Rhodospirillum rubrum [TaxId:269796] [188772] (1 PDB entry)
  14. 2162795Sphingobium yanoikuyae [TaxId:13690] [187741] (2 PDB entries)
    1. Domains for 2gbw:
      1. 2162796Domain d2gbwb_: 2gbw B: [164658]
        Other proteins in same PDB: d2gbwa1, d2gbwa2, d2gbwc1, d2gbwc2, d2gbwe1, d2gbwe2
        automated match to d1ulid_
        complexed with fe, fes, oxy
      2. 2162797Domain d2gbwd_: 2gbw D: [164659]
        Other proteins in same PDB: d2gbwa1, d2gbwa2, d2gbwc1, d2gbwc2, d2gbwe1, d2gbwe2
        automated match to d1ulid_
        complexed with fe, fes, oxy
      3. 2162798Domain d2gbwf_: 2gbw F: [164660]
        Other proteins in same PDB: d2gbwa1, d2gbwa2, d2gbwc1, d2gbwc2, d2gbwe1, d2gbwe2
        automated match to d1ulid_
        complexed with fe, fes, oxy
    2. Domains for 2gbx:
      1. 2162799Domain d2gbxb_: 2gbx B: [164661]
        Other proteins in same PDB: d2gbxa1, d2gbxa2, d2gbxc1, d2gbxc2, d2gbxe1, d2gbxe2
        automated match to d1ulid_
        complexed with bnl, fe, fes, zn
      2. 2162800Domain d2gbxd_: 2gbx D: [164662]
        Other proteins in same PDB: d2gbxa1, d2gbxa2, d2gbxc1, d2gbxc2, d2gbxe1, d2gbxe2
        automated match to d1ulid_
        complexed with bnl, fe, fes, zn
      3. 2162801Domain d2gbxf_: 2gbx F: [164663]
        Other proteins in same PDB: d2gbxa1, d2gbxa2, d2gbxc1, d2gbxc2, d2gbxe1, d2gbxe2
        automated match to d1ulid_
        complexed with bnl, fe, fes, zn
  15. 2162802Sphingomonas sp. [TaxId:279135] [187555] (1 PDB entry)
  16. 2162806Staphylococcus aureus [TaxId:1280] [256158] (3 PDB entries)
    1. Domains for 3zg5:
      1. 2162807Domain d3zg5a1: 3zg5 A:27-138 [250785]
        Other proteins in same PDB: d3zg5a2, d3zg5a3, d3zg5b2, d3zg5b3
        automated match to d1vqqa1
        complexed with cd, cl
      2. 2162808Domain d3zg5b1: 3zg5 B:27-138 [250788]
        Other proteins in same PDB: d3zg5a2, d3zg5a3, d3zg5b2, d3zg5b3
        automated match to d1vqqa1
        complexed with cd, cl
    2. Domains for 4bl2:
      1. 2162809Domain d4bl2a1: 4bl2 A:26-138 [256551]
        Other proteins in same PDB: d4bl2a2, d4bl2a3, d4bl2b2, d4bl2b3
        automated match to d1vqqa1
        complexed with cd, cl; mutant
      2. 2162810Domain d4bl2b1: 4bl2 B:27-138 [256554]
        Other proteins in same PDB: d4bl2a2, d4bl2a3, d4bl2b2, d4bl2b3
        automated match to d1vqqa1
        complexed with cd, cl; mutant
    3. Domains for 4bl3:
      1. 2162811Domain d4bl3a1: 4bl3 A:26-138 [256557]
        Other proteins in same PDB: d4bl3a2, d4bl3a3, d4bl3b2, d4bl3b3
        automated match to d1vqqa1
        complexed with cd, cl, mur; mutant
      2. 2162812Domain d4bl3b1: 4bl3 B:26-138 [259319]
        Other proteins in same PDB: d4bl3a2, d4bl3a3, d4bl3b2, d4bl3b3
        automated match to d1vqqa1
        complexed with cd, cl, mur; mutant
  17. 2162813Staphylococcus aureus [TaxId:158878] [256155] (4 PDB entries)
    1. Domains for 3zfz:
      1. 2162816Domain d3zfza1: 3zfz A:27-138 [250773]
        Other proteins in same PDB: d3zfza2, d3zfza3, d3zfzb2, d3zfzb3
        automated match to d1vqqa1
        complexed with 1w8, ai8, cd, cl, mur
      2. 2162817Domain d3zfzb1: 3zfz B:27-138 [250776]
        Other proteins in same PDB: d3zfza2, d3zfza3, d3zfzb2, d3zfzb3
        automated match to d1vqqa1
        complexed with 1w8, ai8, cd, cl, mur
    2. Domains for 3zg0:
      1. 2162820Domain d3zg0a1: 3zg0 A:27-138 [250779]
        Other proteins in same PDB: d3zg0a2, d3zg0a3, d3zg0b2, d3zg0b3
        automated match to d1vqqa1
        complexed with 1w8, ai8, cd, cl, mur
      2. 2162821Domain d3zg0b1: 3zg0 B:27-138 [250782]
        Other proteins in same PDB: d3zg0a2, d3zg0a3, d3zg0b2, d3zg0b3
        automated match to d1vqqa1
        complexed with 1w8, ai8, cd, cl, mur
    3. Domains for 4cjn:
      1. 2162814Domain d4cjna1: 4cjn A:27-138 [269620]
        Other proteins in same PDB: d4cjna2, d4cjna3, d4cjnb2, d4cjnb3
        automated match to d1vqqa1
        complexed with cd, cl, mur, qnz
      2. 2162815Domain d4cjnb1: 4cjn B:27-138 [269619]
        Other proteins in same PDB: d4cjna2, d4cjna3, d4cjnb2, d4cjnb3
        automated match to d1vqqa1
        complexed with cd, cl, mur, qnz
    4. Domains for 4cpk:
      1. 2162818Domain d4cpka1: 4cpk A:27-138 [262606]
        Other proteins in same PDB: d4cpka2, d4cpka3, d4cpkb2, d4cpkb3
        automated match to d1vqqa1
        complexed with cd, cl, mur; mutant
      2. 2162819Domain d4cpkb1: 4cpk B:27-138 [259337]
        Other proteins in same PDB: d4cpka2, d4cpka3, d4cpkb2, d4cpkb3
        automated match to d1vqqa1
        complexed with cd, cl, mur; mutant
  18. 2162822Streptomyces albus [TaxId:1888] [277508] (1 PDB entry)
  19. 2162825Streptomyces cinnamonensis [TaxId:1900] [311349] (1 PDB entry)
  20. 2162828Synechocystis sp. [TaxId:1111708] [275032] (1 PDB entry)
  21. 2162830Synechocystis sp. [TaxId:1148] [225878] (6 PDB entries)
    1. Domains for 3i1v:
      1. 2162835Domain d3i1va2: 3i1v A:174-311 [305540]
        Other proteins in same PDB: d3i1va1, d3i1vb1
        automated match to d1m98a2
        complexed with gol, raw
      2. 2162836Domain d3i1vb2: 3i1v B:174-312 [305542]
        Other proteins in same PDB: d3i1va1, d3i1vb1
        automated match to d1m98a2
        complexed with gol, raw
    2. Domains for 3i1w:
      1. 2162839Domain d3i1wa2: 3i1w A:174-312 [305544]
        Other proteins in same PDB: d3i1wa1, d3i1wb1
        automated match to d1m98a2
        complexed with raw; mutant
      2. 2162840Domain d3i1wb2: 3i1w B:174-312 [305546]
        Other proteins in same PDB: d3i1wa1, d3i1wb1
        automated match to d1m98a2
        complexed with raw; mutant
    3. Domains for 3i1x:
      1. 2162837Domain d3i1xa2: 3i1x A:174-312 [305548]
        Other proteins in same PDB: d3i1xa1, d3i1xb1
        automated match to d1m98a2
        complexed with gol, raw; mutant
      2. 2162838Domain d3i1xb2: 3i1x B:174-311 [305550]
        Other proteins in same PDB: d3i1xa1, d3i1xb1
        automated match to d1m98a2
        complexed with gol, raw; mutant
    4. Domains for 3mg1:
      1. 2162833Domain d3mg1a2: 3mg1 A:174-311 [213238]
        Other proteins in same PDB: d3mg1a1, d3mg1b1
        automated match to d1m98a2
        complexed with ech, gol
      2. 2162834Domain d3mg1b2: 3mg1 B:174-312 [213240]
        Other proteins in same PDB: d3mg1a1, d3mg1b1
        automated match to d1m98a2
        complexed with ech, gol
    5. Domains for 3mg2:
      1. 2162841Domain d3mg2a2: 3mg2 A:174-312 [213242]
        Other proteins in same PDB: d3mg2a1, d3mg2b1
        automated match to d1m98a2
        complexed with ech; mutant
      2. 2162842Domain d3mg2b2: 3mg2 B:174-312 [213244]
        Other proteins in same PDB: d3mg2a1, d3mg2b1
        automated match to d1m98a2
        complexed with ech; mutant
    6. Domains for 3mg3:
      1. 2162831Domain d3mg3a2: 3mg3 A:174-312 [213246]
        Other proteins in same PDB: d3mg3a1, d3mg3b1
        automated match to d1m98a2
        complexed with ech, gol; mutant
      2. 2162832Domain d3mg3b2: 3mg3 B:174-311 [213248]
        Other proteins in same PDB: d3mg3a1, d3mg3b1
        automated match to d1m98a2
        complexed with ech, gol; mutant
  22. 2162843Xanthomonas campestris [TaxId:340] [225616] (1 PDB entry)
  23. 2271681Nematostella vectensis [TaxId:45351] [314982] (1 PDB entry)
  24. 2271867Salpingoeca rosetta [TaxId:946362] [315168] (1 PDB entry)
  25. 2280026Escherichia coli [TaxId:562] [323327] (1 PDB entry)
  26. 2282933Nostoc sp. [TaxId:103690] [326234] (1 PDB entry)

More info for Protein automated matches from d.17.4.0: automated matches

Timeline for Protein automated matches from d.17.4.0: automated matches: