Lineage for Protein: automated matches

  1. Root: SCOPe 2.06
  2. 2152203Class d: Alpha and beta proteins (a+b) [53931] (385 folds)
  3. 2161468Fold d.17: Cystatin-like [54402] (7 superfamilies)
    Core: alpha-beta(4); helix packs against coiled antiparallel beta-sheet
  4. 2161993Superfamily d.17.4: NTF2-like [54427] (31 families) (S)
    has a beta-alpha(2)-beta insertion after the main helix
  5. 2162741Family d.17.4.0: automated matches [191337] (1 protein)
    not a true family
  6. 2162742Protein automated matches [190205] (26 species)
    not a true protein

Species:

  1. 2162743Bacillus cereus [TaxId:222523] [188845] (1 PDB entry)
  2. 2162746Bartonella birtlesii [TaxId:111504] [256329] (1 PDB entry)
  3. 2162748Bartonella grahamii [TaxId:634504] [256352] (2 PDB entries)
    1. Domain for 4kz1:
    2. Domains for 4nhf:
      1. 2162749Domain d4nhfa_: 4nhf A: [253953]
        automated match to d2bhma1
        complexed with ca
      2. 2162750Domain d4nhfb_: 4nhf B: [253954]
        automated match to d2bhma1
        complexed with ca
      3. 2162751Domain d4nhfc_: 4nhf C: [253955]
        automated match to d2bhma1
        complexed with ca
      4. 2162752Domain d4nhfd_: 4nhf D: [253956]
        automated match to d2bhma1
        complexed with ca
      5. 2162753Domain d4nhfe_: 4nhf E: [253957]
        automated match to d2bhma1
        complexed with ca
      6. 2162754Domain d4nhff_: 4nhf F: [253958]
        automated match to d2bhma1
        complexed with ca
  4. 2162756Bartonella quintana [TaxId:1134506] [256360] (1 PDB entry)
  5. 2162758Bartonella tribocorum [TaxId:382640] [256364] (1 PDB entry)
  6. 2162760Burkholderia xenovorans [TaxId:266265] [188714] (1 PDB entry)
  7. 2162763Cryptosporidium parvum [TaxId:5807] [187280] (1 PDB entry)
  8. 2162765Fruit fly (Drosophila melanogaster) [TaxId:7227] [195496] (1 PDB entry)
  9. 2162768Human (Homo sapiens) [TaxId:9606] [189642] (4 PDB entries)
    1. Domains for 3q90:
      1. 2162769Domain d3q90a_: 3q90 A: [184278]
        Other proteins in same PDB: d3q90b2
        automated match to d1zo2a1
      2. 2162770Domain d3q90b1: 3q90 B:1-139 [184279]
        Other proteins in same PDB: d3q90b2
        automated match to d1zo2a1
    2. Domains for 4fcj:
      1. 2162771Domain d4fcja_: 4fcj A: [221143]
        Other proteins in same PDB: d4fcjb2
        automated match to d4fcma_
        complexed with gol
      2. 2162772Domain d4fcjb1: 4fcj B:1-138 [221144]
        Other proteins in same PDB: d4fcjb2
        automated match to d4fcma_
        complexed with gol
    3. Domains for 4fcm:
      1. 2162773Domain d4fcma_: 4fcm A: [197234]
        automated match to d3q90b_
        complexed with po4
      2. 2162774Domain d4fcmb_: 4fcm B: [202028]
        automated match to d4fcma_
        complexed with po4
    4. Domains for 5fw5:
      1. 2276448Domain d5fw5b_: 5fw5 B: [319749]
        Other proteins in same PDB: d5fw5a2
        automated match to d4fcja_
        complexed with act, gol, k, so4
      2. 2276549Domain d5fw5a1: 5fw5 A:1-139 [319850]
        Other proteins in same PDB: d5fw5a2
        automated match to d4fcja_
        complexed with act, gol, k, so4
  10. 2162775Methylobacillus flagellatus [TaxId:265072] [188697] (1 PDB entry)
  11. 2162782Nematode (Caenorhabditis elegans) [TaxId:6239] [187281] (2 PDB entries)
    1. Domains for 2f86:
      1. 2162784Domain d2f86d_: 2f86 D: [146999]
        Other proteins in same PDB: d2f86b1
        automated match to d1hkxd_
      2. 2162785Domain d2f86f_: 2f86 F: [147000]
        Other proteins in same PDB: d2f86b1
        automated match to d1hkxd_
      3. 2162786Domain d2f86h_: 2f86 H: [147001]
        Other proteins in same PDB: d2f86b1
        automated match to d1hkxd_
      4. 2162787Domain d2f86j_: 2f86 J: [147002]
        Other proteins in same PDB: d2f86b1
        automated match to d1hkxd_
      5. 2162788Domain d2f86l_: 2f86 L: [147003]
        Other proteins in same PDB: d2f86b1
        automated match to d1hkxd_
      6. 2162789Domain d2f86n_: 2f86 N: [147004]
        Other proteins in same PDB: d2f86b1
        automated match to d1hkxd_
    2. Domain for 3nv0:
      • 2162783Domain d3nv0b_: 3nv0 B: [214058]
        automated match to d1jkga_
        protein/RNA complex; complexed with bme, edo, na, peg; mutant
  12. 2162790Rhodococcus sp. [TaxId:92694] [186958] (1 PDB entry)
  13. 2162793Rhodospirillum rubrum [TaxId:269796] [188772] (1 PDB entry)
  14. 2162795Sphingobium yanoikuyae [TaxId:13690] [187741] (2 PDB entries)
    1. Domains for 2gbw:
      1. 2162796Domain d2gbwb_: 2gbw B: [164658]
        Other proteins in same PDB: d2gbwa1, d2gbwa2, d2gbwc1, d2gbwc2, d2gbwe1, d2gbwe2
        automated match to d1ulid_
        complexed with fe, fes, oxy
      2. 2162797Domain d2gbwd_: 2gbw D: [164659]
        Other proteins in same PDB: d2gbwa1, d2gbwa2, d2gbwc1, d2gbwc2, d2gbwe1, d2gbwe2
        automated match to d1ulid_
        complexed with fe, fes, oxy
      3. 2162798Domain d2gbwf_: 2gbw F: [164660]
        Other proteins in same PDB: d2gbwa1, d2gbwa2, d2gbwc1, d2gbwc2, d2gbwe1, d2gbwe2
        automated match to d1ulid_
        complexed with fe, fes, oxy
    2. Domains for 2gbx:
      1. 2162799Domain d2gbxb_: 2gbx B: [164661]
        Other proteins in same PDB: d2gbxa1, d2gbxa2, d2gbxc1, d2gbxc2, d2gbxe1, d2gbxe2
        automated match to d1ulid_
        complexed with bnl, fe, fes, zn
      2. 2162800Domain d2gbxd_: 2gbx D: [164662]
        Other proteins in same PDB: d2gbxa1, d2gbxa2, d2gbxc1, d2gbxc2, d2gbxe1, d2gbxe2
        automated match to d1ulid_
        complexed with bnl, fe, fes, zn
      3. 2162801Domain d2gbxf_: 2gbx F: [164663]
        Other proteins in same PDB: d2gbxa1, d2gbxa2, d2gbxc1, d2gbxc2, d2gbxe1, d2gbxe2
        automated match to d1ulid_
        complexed with bnl, fe, fes, zn
  15. 2162802Sphingomonas sp. [TaxId:279135] [187555] (1 PDB entry)
  16. 2162806Staphylococcus aureus [TaxId:1280] [256158] (3 PDB entries)
    1. Domains for 3zg5:
      1. 2162807Domain d3zg5a1: 3zg5 A:27-138 [250785]
        Other proteins in same PDB: d3zg5a2, d3zg5a3, d3zg5b2, d3zg5b3
        automated match to d1vqqa1
        complexed with cd, cl
      2. 2162808Domain d3zg5b1: 3zg5 B:27-138 [250788]
        Other proteins in same PDB: d3zg5a2, d3zg5a3, d3zg5b2, d3zg5b3
        automated match to d1vqqa1
        complexed with cd, cl
    2. Domains for 4bl2:
      1. 2162809Domain d4bl2a1: 4bl2 A:26-138 [256551]
        Other proteins in same PDB: d4bl2a2, d4bl2a3, d4bl2b2, d4bl2b3
        automated match to d1vqqa1
        complexed with cd, cl; mutant
      2. 2162810Domain d4bl2b1: 4bl2 B:27-138 [256554]
        Other proteins in same PDB: d4bl2a2, d4bl2a3, d4bl2b2, d4bl2b3
        automated match to d1vqqa1
        complexed with cd, cl; mutant
    3. Domains for 4bl3:
      1. 2162811Domain d4bl3a1: 4bl3 A:26-138 [256557]
        Other proteins in same PDB: d4bl3a2, d4bl3a3, d4bl3b2, d4bl3b3
        automated match to d1vqqa1
        complexed with cd, cl, mur; mutant
      2. 2162812Domain d4bl3b1: 4bl3 B:26-138 [259319]
        Other proteins in same PDB: d4bl3a2, d4bl3a3, d4bl3b2, d4bl3b3
        automated match to d1vqqa1
        complexed with cd, cl, mur; mutant
  17. 2162813Staphylococcus aureus [TaxId:158878] [256155] (4 PDB entries)
    1. Domains for 3zfz:
      1. 2162816Domain d3zfza1: 3zfz A:27-138 [250773]
        Other proteins in same PDB: d3zfza2, d3zfza3, d3zfzb2, d3zfzb3
        automated match to d1vqqa1
        complexed with 1w8, ai8, cd, cl, mur
      2. 2162817Domain d3zfzb1: 3zfz B:27-138 [250776]
        Other proteins in same PDB: d3zfza2, d3zfza3, d3zfzb2, d3zfzb3
        automated match to d1vqqa1
        complexed with 1w8, ai8, cd, cl, mur
    2. Domains for 3zg0:
      1. 2162820Domain d3zg0a1: 3zg0 A:27-138 [250779]
        Other proteins in same PDB: d3zg0a2, d3zg0a3, d3zg0b2, d3zg0b3
        automated match to d1vqqa1
        complexed with 1w8, ai8, cd, cl, mur
      2. 2162821Domain d3zg0b1: 3zg0 B:27-138 [250782]
        Other proteins in same PDB: d3zg0a2, d3zg0a3, d3zg0b2, d3zg0b3
        automated match to d1vqqa1
        complexed with 1w8, ai8, cd, cl, mur
    3. Domains for 4cjn:
      1. 2162814Domain d4cjna1: 4cjn A:27-138 [269620]
        Other proteins in same PDB: d4cjna2, d4cjna3, d4cjnb2, d4cjnb3
        automated match to d1vqqa1
        complexed with cd, cl, mur, qnz
      2. 2162815Domain d4cjnb1: 4cjn B:27-138 [269619]
        Other proteins in same PDB: d4cjna2, d4cjna3, d4cjnb2, d4cjnb3
        automated match to d1vqqa1
        complexed with cd, cl, mur, qnz
    4. Domains for 4cpk:
      1. 2162818Domain d4cpka1: 4cpk A:27-138 [262606]
        Other proteins in same PDB: d4cpka2, d4cpka3, d4cpkb2, d4cpkb3
        automated match to d1vqqa1
        complexed with cd, cl, mur; mutant
      2. 2162819Domain d4cpkb1: 4cpk B:27-138 [259337]
        Other proteins in same PDB: d4cpka2, d4cpka3, d4cpkb2, d4cpkb3
        automated match to d1vqqa1
        complexed with cd, cl, mur; mutant
  18. 2162822Streptomyces albus [TaxId:1888] [277508] (1 PDB entry)
  19. 2162825Streptomyces cinnamonensis [TaxId:1900] [311349] (1 PDB entry)
  20. 2162828Synechocystis sp. [TaxId:1111708] [275032] (4 PDB entries)
    1. Domain for 4xb5:
    2. Domains for 5tuw:
      1. 2291873Domain d5tuwc2: 5tuw C:174-311 [335174]
        Other proteins in same PDB: d5tuwa1, d5tuwb1, d5tuwc1, d5tuwd1, d5tuwe1, d5tuwf1
        automated match to d1m98a2
        complexed with eq3, gol
      2. 2291881Domain d5tuwf2: 5tuw F:174-311 [335182]
        Other proteins in same PDB: d5tuwa1, d5tuwb1, d5tuwc1, d5tuwd1, d5tuwe1, d5tuwf1
        automated match to d1m98a2
        complexed with eq3, gol
      3. 2291883Domain d5tuwb2: 5tuw B:174-311 [335184]
        Other proteins in same PDB: d5tuwa1, d5tuwb1, d5tuwc1, d5tuwd1, d5tuwe1, d5tuwf1
        automated match to d1m98a2
        complexed with eq3, gol
      4. 2291890Domain d5tuwd2: 5tuw D:174-311 [335191]
        Other proteins in same PDB: d5tuwa1, d5tuwb1, d5tuwc1, d5tuwd1, d5tuwe1, d5tuwf1
        automated match to d1m98a2
        complexed with eq3, gol
      5. 2291979Domain d5tuwe2: 5tuw E:174-311 [335280]
        Other proteins in same PDB: d5tuwa1, d5tuwb1, d5tuwc1, d5tuwd1, d5tuwe1, d5tuwf1
        automated match to d1m98a2
        complexed with eq3, gol
      6. 2291994Domain d5tuwa2: 5tuw A:174-311 [335295]
        Other proteins in same PDB: d5tuwa1, d5tuwb1, d5tuwc1, d5tuwd1, d5tuwe1, d5tuwf1
        automated match to d1m98a2
        complexed with eq3, gol
    3. Domain for 5tux:
    4. Domain for 5tv0:
  21. 2162830Synechocystis sp. [TaxId:1148] [225878] (6 PDB entries)
    1. Domains for 3i1v:
      1. 2162835Domain d3i1va2: 3i1v A:174-311 [305540]
        Other proteins in same PDB: d3i1va1, d3i1vb1
        automated match to d1m98a2
        complexed with gol, raw
      2. 2162836Domain d3i1vb2: 3i1v B:174-312 [305542]
        Other proteins in same PDB: d3i1va1, d3i1vb1
        automated match to d1m98a2
        complexed with gol, raw
    2. Domains for 3i1w:
      1. 2162839Domain d3i1wa2: 3i1w A:174-312 [305544]
        Other proteins in same PDB: d3i1wa1, d3i1wb1
        automated match to d1m98a2
        complexed with raw; mutant
      2. 2162840Domain d3i1wb2: 3i1w B:174-312 [305546]
        Other proteins in same PDB: d3i1wa1, d3i1wb1
        automated match to d1m98a2
        complexed with raw; mutant
    3. Domains for 3i1x:
      1. 2162837Domain d3i1xa2: 3i1x A:174-312 [305548]
        Other proteins in same PDB: d3i1xa1, d3i1xb1
        automated match to d1m98a2
        complexed with gol, raw; mutant
      2. 2162838Domain d3i1xb2: 3i1x B:174-311 [305550]
        Other proteins in same PDB: d3i1xa1, d3i1xb1
        automated match to d1m98a2
        complexed with gol, raw; mutant
    4. Domains for 3mg1:
      1. 2162833Domain d3mg1a2: 3mg1 A:174-311 [213238]
        Other proteins in same PDB: d3mg1a1, d3mg1b1
        automated match to d1m98a2
        complexed with ech, gol
      2. 2162834Domain d3mg1b2: 3mg1 B:174-312 [213240]
        Other proteins in same PDB: d3mg1a1, d3mg1b1
        automated match to d1m98a2
        complexed with ech, gol
    5. Domains for 3mg2:
      1. 2162841Domain d3mg2a2: 3mg2 A:174-312 [213242]
        Other proteins in same PDB: d3mg2a1, d3mg2b1
        automated match to d1m98a2
        complexed with ech; mutant
      2. 2162842Domain d3mg2b2: 3mg2 B:174-312 [213244]
        Other proteins in same PDB: d3mg2a1, d3mg2b1
        automated match to d1m98a2
        complexed with ech; mutant
    6. Domains for 3mg3:
      1. 2162831Domain d3mg3a2: 3mg3 A:174-312 [213246]
        Other proteins in same PDB: d3mg3a1, d3mg3b1
        automated match to d1m98a2
        complexed with ech, gol; mutant
      2. 2162832Domain d3mg3b2: 3mg3 B:174-311 [213248]
        Other proteins in same PDB: d3mg3a1, d3mg3b1
        automated match to d1m98a2
        complexed with ech, gol; mutant
  22. 2162843Xanthomonas campestris [TaxId:340] [225616] (1 PDB entry)
  23. 2271681Nematostella vectensis [TaxId:45351] [314982] (1 PDB entry)
  24. 2271867Salpingoeca rosetta [TaxId:946362] [315168] (1 PDB entry)
  25. 2280026Escherichia coli [TaxId:562] [323327] (1 PDB entry)
  26. 2282933Nostoc sp. [TaxId:103690] [326234] (1 PDB entry)

More info for Protein automated matches from d.17.4.0: automated matches

Timeline for Protein automated matches from d.17.4.0: automated matches: