Lineage for Protein: automated matches

  1. Root: SCOPe 2.07
  2. 2494617Class d: Alpha and beta proteins (a+b) [53931] (388 folds)
  3. 2504826Fold d.17: Cystatin-like [54402] (7 superfamilies)
    Core: alpha-beta(4); helix packs against coiled antiparallel beta-sheet
  4. 2505360Superfamily d.17.4: NTF2-like [54427] (31 families) (S)
    has a beta-alpha(2)-beta insertion after the main helix
  5. 2506189Family d.17.4.0: automated matches [191337] (1 protein)
    not a true family
  6. 2506190Protein automated matches [190205] (28 species)
    not a true protein

Species:

  1. 2506191Bacillus cereus [TaxId:222523] [188845] (1 PDB entry)
  2. 2506194Bartonella birtlesii [TaxId:111504] [256329] (1 PDB entry)
  3. 2506196Bartonella grahamii [TaxId:634504] [256352] (2 PDB entries)
    1. Domain for 4kz1:
    2. Domains for 4nhf:
      1. 2506197Domain d4nhfa_: 4nhf A: [253953]
        automated match to d2bhma1
        complexed with ca
      2. 2506198Domain d4nhfb_: 4nhf B: [253954]
        automated match to d2bhma1
        complexed with ca
      3. 2506199Domain d4nhfc_: 4nhf C: [253955]
        automated match to d2bhma1
        complexed with ca
      4. 2506200Domain d4nhfd_: 4nhf D: [253956]
        automated match to d2bhma1
        complexed with ca
      5. 2506201Domain d4nhfe_: 4nhf E: [253957]
        automated match to d2bhma1
        complexed with ca
      6. 2506202Domain d4nhff_: 4nhf F: [253958]
        automated match to d2bhma1
        complexed with ca
  4. 2506204Bartonella quintana [TaxId:1134506] [256360] (1 PDB entry)
  5. 2506206Bartonella tribocorum [TaxId:382640] [256364] (1 PDB entry)
  6. 2506208Burkholderia xenovorans [TaxId:266265] [188714] (1 PDB entry)
  7. 2506211Cryptosporidium parvum [TaxId:5807] [187280] (1 PDB entry)
  8. 2506213Escherichia coli [TaxId:562] [323327] (5 PDB entries)
    1. Domains for 5i97:
      1. 2506214Domain d5i97a_: 5i97 A: [323387]
        automated match to d4nhfa_
      2. 2506215Domain d5i97b_: 5i97 B: [323328]
        automated match to d4nhfa_
      3. 2506216Domain d5i97c_: 5i97 C: [323429]
        automated match to d4nhfa_
      4. 2506217Domain d5i97d_: 5i97 D: [323373]
        automated match to d4nhfa_
    2. Domains for 5wic:
      1. 2506218Domain d5wica_: 5wic A: [341714]
        automated match to d4nhfa_
        complexed with foa
      2. 2506219Domain d5wicb_: 5wic B: [341759]
        automated match to d4nhfa_
        complexed with foa
      3. 2506220Domain d5wicc_: 5wic C: [341636]
        automated match to d4nhfa_
        complexed with foa
      4. 2506221Domain d5wicd_: 5wic D: [341762]
        automated match to d4nhfa_
        complexed with foa
    3. Domains for 5wii:
      1. 2506230Domain d5wiia_: 5wii A: [341653]
        automated match to d4nhfa_
        complexed with ao4
      2. 2506231Domain d5wiib_: 5wii B: [341723]
        automated match to d4nhfa_
        complexed with ao4
      3. 2506232Domain d5wiic_: 5wii C: [341649]
        automated match to d4nhfa_
        complexed with ao4
      4. 2506233Domain d5wiid_: 5wii D: [341647]
        automated match to d4nhfa_
        complexed with ao4
    4. Domains for 5wio:
      1. 2506222Domain d5wioa_: 5wio A: [341733]
        automated match to d4nhfa_
        complexed with xxe
      2. 2506223Domain d5wiob_: 5wio B: [341666]
        automated match to d4nhfa_
        complexed with xxe
      3. 2506224Domain d5wioc_: 5wio C: [341678]
        automated match to d4nhfa_
        complexed with xxe
      4. 2506225Domain d5wiod_: 5wio D: [341686]
        automated match to d4nhfa_
        complexed with xxe
    5. Domains for 5wip:
      1. 2506226Domain d5wipa_: 5wip A: [341726]
        automated match to d4nhfa_
        complexed with xxo
      2. 2506227Domain d5wipb_: 5wip B: [341737]
        automated match to d4nhfa_
        complexed with xxo
      3. 2506228Domain d5wipc_: 5wip C: [341724]
        automated match to d4nhfa_
        complexed with xxo
      4. 2506229Domain d5wipd_: 5wip D: [341716]
        automated match to d4nhfa_
        complexed with xxo
  9. 2506234Fruit fly (Drosophila melanogaster) [TaxId:7227] [195496] (1 PDB entry)
  10. 2506237Human (Homo sapiens) [TaxId:9606] [189642] (4 PDB entries)
    1. Domains for 3q90:
      1. 2506238Domain d3q90a_: 3q90 A: [184278]
        Other proteins in same PDB: d3q90b2
        automated match to d1zo2a1
      2. 2506239Domain d3q90b1: 3q90 B:1-139 [184279]
        Other proteins in same PDB: d3q90b2
        automated match to d1zo2a1
    2. Domains for 4fcj:
      1. 2506240Domain d4fcja_: 4fcj A: [221143]
        Other proteins in same PDB: d4fcjb2
        automated match to d4fcma_
        complexed with gol
      2. 2506241Domain d4fcjb1: 4fcj B:1-138 [221144]
        Other proteins in same PDB: d4fcjb2
        automated match to d4fcma_
        complexed with gol
    3. Domains for 4fcm:
      1. 2506244Domain d4fcma_: 4fcm A: [197234]
        automated match to d3q90b_
        complexed with po4
      2. 2506245Domain d4fcmb_: 4fcm B: [202028]
        automated match to d4fcma_
        complexed with po4
    4. Domains for 5fw5:
      1. 2506242Domain d5fw5a1: 5fw5 A:1-139 [319850]
        Other proteins in same PDB: d5fw5a2
        automated match to d4fcja_
        complexed with act, gol, k, so4
      2. 2506243Domain d5fw5b_: 5fw5 B: [319749]
        Other proteins in same PDB: d5fw5a2
        automated match to d4fcja_
        complexed with act, gol, k, so4
  11. 2506246Methylobacillus flagellatus [TaxId:265072] [188697] (1 PDB entry)
  12. 2506253Nematode (Caenorhabditis elegans) [TaxId:6239] [187281] (2 PDB entries)
    1. Domains for 2f86:
      1. 2506255Domain d2f86d_: 2f86 D: [146999]
        Other proteins in same PDB: d2f86b1
        automated match to d1hkxd_
      2. 2506256Domain d2f86f_: 2f86 F: [147000]
        Other proteins in same PDB: d2f86b1
        automated match to d1hkxd_
      3. 2506257Domain d2f86h_: 2f86 H: [147001]
        Other proteins in same PDB: d2f86b1
        automated match to d1hkxd_
      4. 2506258Domain d2f86j_: 2f86 J: [147002]
        Other proteins in same PDB: d2f86b1
        automated match to d1hkxd_
      5. 2506259Domain d2f86l_: 2f86 L: [147003]
        Other proteins in same PDB: d2f86b1
        automated match to d1hkxd_
      6. 2506260Domain d2f86n_: 2f86 N: [147004]
        Other proteins in same PDB: d2f86b1
        automated match to d1hkxd_
    2. Domain for 3nv0:
      • 2506254Domain d3nv0b_: 3nv0 B: [214058]
        automated match to d1jkga_
        protein/RNA complex; complexed with bme, edo, na, peg; mutant
  13. 2506261Nematostella vectensis [TaxId:45351] [314982] (1 PDB entry)
  14. 2506269Nostoc sp. [TaxId:103690] [326234] (1 PDB entry)
  15. 2506272Rhodococcus sp. [TaxId:92694] [186958] (1 PDB entry)
  16. 2506275Rhodospirillum rubrum [TaxId:269796] [188772] (1 PDB entry)
  17. 2506277Salpingoeca rosetta [TaxId:946362] [315168] (1 PDB entry)
  18. 2506279Sphingobium yanoikuyae [TaxId:13690] [187741] (2 PDB entries)
    1. Domains for 2gbw:
      1. 2506280Domain d2gbwb_: 2gbw B: [164658]
        Other proteins in same PDB: d2gbwa1, d2gbwa2, d2gbwc1, d2gbwc2, d2gbwe1, d2gbwe2
        automated match to d1ulid_
        complexed with fe, fes, oxy
      2. 2506281Domain d2gbwd_: 2gbw D: [164659]
        Other proteins in same PDB: d2gbwa1, d2gbwa2, d2gbwc1, d2gbwc2, d2gbwe1, d2gbwe2
        automated match to d1ulid_
        complexed with fe, fes, oxy
      3. 2506282Domain d2gbwf_: 2gbw F: [164660]
        Other proteins in same PDB: d2gbwa1, d2gbwa2, d2gbwc1, d2gbwc2, d2gbwe1, d2gbwe2
        automated match to d1ulid_
        complexed with fe, fes, oxy
    2. Domains for 2gbx:
      1. 2506283Domain d2gbxb_: 2gbx B: [164661]
        Other proteins in same PDB: d2gbxa1, d2gbxa2, d2gbxc1, d2gbxc2, d2gbxe1, d2gbxe2
        automated match to d1ulid_
        complexed with bnl, fe, fes, zn
      2. 2506284Domain d2gbxd_: 2gbx D: [164662]
        Other proteins in same PDB: d2gbxa1, d2gbxa2, d2gbxc1, d2gbxc2, d2gbxe1, d2gbxe2
        automated match to d1ulid_
        complexed with bnl, fe, fes, zn
      3. 2506285Domain d2gbxf_: 2gbx F: [164663]
        Other proteins in same PDB: d2gbxa1, d2gbxa2, d2gbxc1, d2gbxc2, d2gbxe1, d2gbxe2
        automated match to d1ulid_
        complexed with bnl, fe, fes, zn
  19. 2506286Sphingomonas sp. [TaxId:279135] [187555] (1 PDB entry)
  20. 2506290Staphylococcus aureus [TaxId:1280] [256158] (3 PDB entries)
    1. Domains for 3zg5:
      1. 2506291Domain d3zg5a1: 3zg5 A:27-138 [250785]
        Other proteins in same PDB: d3zg5a2, d3zg5a3, d3zg5b2, d3zg5b3
        automated match to d1vqqa1
        complexed with cd, cl
      2. 2506292Domain d3zg5b1: 3zg5 B:27-138 [250788]
        Other proteins in same PDB: d3zg5a2, d3zg5a3, d3zg5b2, d3zg5b3
        automated match to d1vqqa1
        complexed with cd, cl
    2. Domains for 4bl2:
      1. 2506293Domain d4bl2a1: 4bl2 A:26-138 [256551]
        Other proteins in same PDB: d4bl2a2, d4bl2a3, d4bl2b2, d4bl2b3
        automated match to d1vqqa1
        complexed with cd, cl; mutant
      2. 2506294Domain d4bl2b1: 4bl2 B:27-138 [256554]
        Other proteins in same PDB: d4bl2a2, d4bl2a3, d4bl2b2, d4bl2b3
        automated match to d1vqqa1
        complexed with cd, cl; mutant
    3. Domains for 4bl3:
      1. 2506295Domain d4bl3a1: 4bl3 A:26-138 [256557]
        Other proteins in same PDB: d4bl3a2, d4bl3a3, d4bl3b2, d4bl3b3
        automated match to d1vqqa1
        complexed with cd, cl, mur; mutant
      2. 2506296Domain d4bl3b1: 4bl3 B:26-138 [259319]
        Other proteins in same PDB: d4bl3a2, d4bl3a3, d4bl3b2, d4bl3b3
        automated match to d1vqqa1
        complexed with cd, cl, mur; mutant
  21. 2506297Staphylococcus aureus [TaxId:158878] [256155] (4 PDB entries)
    1. Domains for 3zfz:
      1. 2506300Domain d3zfza1: 3zfz A:27-138 [250773]
        Other proteins in same PDB: d3zfza2, d3zfza3, d3zfzb2, d3zfzb3
        automated match to d1vqqa1
        complexed with 1w8, ai8, cd, cl, mur
      2. 2506301Domain d3zfzb1: 3zfz B:27-138 [250776]
        Other proteins in same PDB: d3zfza2, d3zfza3, d3zfzb2, d3zfzb3
        automated match to d1vqqa1
        complexed with 1w8, ai8, cd, cl, mur
    2. Domains for 3zg0:
      1. 2506304Domain d3zg0a1: 3zg0 A:27-138 [250779]
        Other proteins in same PDB: d3zg0a2, d3zg0a3, d3zg0b2, d3zg0b3
        automated match to d1vqqa1
        complexed with 1w8, ai8, cd, cl, mur
      2. 2506305Domain d3zg0b1: 3zg0 B:27-138 [250782]
        Other proteins in same PDB: d3zg0a2, d3zg0a3, d3zg0b2, d3zg0b3
        automated match to d1vqqa1
        complexed with 1w8, ai8, cd, cl, mur
    3. Domains for 4cjn:
      1. 2506298Domain d4cjna1: 4cjn A:27-138 [269620]
        Other proteins in same PDB: d4cjna2, d4cjna3, d4cjnb2, d4cjnb3
        automated match to d1vqqa1
        complexed with cd, cl, mur, qnz
      2. 2506299Domain d4cjnb1: 4cjn B:27-138 [269619]
        Other proteins in same PDB: d4cjna2, d4cjna3, d4cjnb2, d4cjnb3
        automated match to d1vqqa1
        complexed with cd, cl, mur, qnz
    4. Domains for 4cpk:
      1. 2506302Domain d4cpka1: 4cpk A:27-138 [262606]
        Other proteins in same PDB: d4cpka2, d4cpka3, d4cpkb2, d4cpkb3
        automated match to d1vqqa1
        complexed with cd, cl, mur; mutant
      2. 2506303Domain d4cpkb1: 4cpk B:27-138 [259337]
        Other proteins in same PDB: d4cpka2, d4cpka3, d4cpkb2, d4cpkb3
        automated match to d1vqqa1
        complexed with cd, cl, mur; mutant
  22. 2506306Streptomyces albus [TaxId:1888] [277508] (1 PDB entry)
  23. 2506309Streptomyces cinnamonensis [TaxId:1900] [311349] (1 PDB entry)
  24. 2506312Streptomyces lasaliensis [TaxId:324833] [346353] (2 PDB entries)
    1. Domains for 3rga:
      1. 2506313Domain d3rgaa1: 3rga A:1-133 [344997]
        Other proteins in same PDB: d3rgaa3
        automated match to d3wmda_
        complexed with act, fmt, gol, ild, lsb, moh, na
      2. 2506314Domain d3rgaa2: 3rga A:134-280 [344998]
        Other proteins in same PDB: d3rgaa3
        automated match to d3wmda_
        complexed with act, fmt, gol, ild, lsb, moh, na
    2. Domains for 4rzm:
      1. 2506315Domain d4rzma1: 4rzm A:1-133 [345439]
        Other proteins in same PDB: d4rzma3, d4rzmb3
        automated match to d3wmda_
        complexed with cl, fmt, gol, lsd, na
      2. 2506316Domain d4rzma2: 4rzm A:134-280 [345440]
        Other proteins in same PDB: d4rzma3, d4rzmb3
        automated match to d3wmda_
        complexed with cl, fmt, gol, lsd, na
      3. 2506317Domain d4rzmb1: 4rzm B:1-133 [345442]
        Other proteins in same PDB: d4rzma3, d4rzmb3
        automated match to d3wmda_
        complexed with cl, fmt, gol, lsd, na
      4. 2506318Domain d4rzmb2: 4rzm B:134-280 [345443]
        Other proteins in same PDB: d4rzma3, d4rzmb3
        automated match to d3wmda_
        complexed with cl, fmt, gol, lsd, na
  25. 2506319Synechocystis sp. [TaxId:1111708] [275032] (4 PDB entries)
    1. Domain for 4xb5:
    2. Domains for 5tuw:
      1. 2506323Domain d5tuwa2: 5tuw A:174-311 [335295]
        Other proteins in same PDB: d5tuwa1, d5tuwb1, d5tuwc1, d5tuwd1, d5tuwe1, d5tuwf1
        automated match to d1m98a2
        complexed with eq3, gol
      2. 2506324Domain d5tuwb2: 5tuw B:174-311 [335184]
        Other proteins in same PDB: d5tuwa1, d5tuwb1, d5tuwc1, d5tuwd1, d5tuwe1, d5tuwf1
        automated match to d1m98a2
        complexed with eq3, gol
      3. 2506325Domain d5tuwc2: 5tuw C:174-311 [335174]
        Other proteins in same PDB: d5tuwa1, d5tuwb1, d5tuwc1, d5tuwd1, d5tuwe1, d5tuwf1
        automated match to d1m98a2
        complexed with eq3, gol
      4. 2506326Domain d5tuwd2: 5tuw D:174-311 [335191]
        Other proteins in same PDB: d5tuwa1, d5tuwb1, d5tuwc1, d5tuwd1, d5tuwe1, d5tuwf1
        automated match to d1m98a2
        complexed with eq3, gol
      5. 2506327Domain d5tuwe2: 5tuw E:174-311 [335280]
        Other proteins in same PDB: d5tuwa1, d5tuwb1, d5tuwc1, d5tuwd1, d5tuwe1, d5tuwf1
        automated match to d1m98a2
        complexed with eq3, gol
      6. 2506328Domain d5tuwf2: 5tuw F:174-311 [335182]
        Other proteins in same PDB: d5tuwa1, d5tuwb1, d5tuwc1, d5tuwd1, d5tuwe1, d5tuwf1
        automated match to d1m98a2
        complexed with eq3, gol
    3. Domain for 5tux:
    4. Domain for 5tv0:
  26. 2506329Synechocystis sp. [TaxId:1148] [225878] (6 PDB entries)
    1. Domains for 3i1v:
      1. 2506330Domain d3i1va2: 3i1v A:174-311 [305540]
        Other proteins in same PDB: d3i1va1, d3i1vb1
        automated match to d1m98a2
        complexed with gol, raw
      2. 2506331Domain d3i1vb2: 3i1v B:174-312 [305542]
        Other proteins in same PDB: d3i1va1, d3i1vb1
        automated match to d1m98a2
        complexed with gol, raw
    2. Domains for 3i1w:
      1. 2506338Domain d3i1wa2: 3i1w A:174-312 [305544]
        Other proteins in same PDB: d3i1wa1, d3i1wb1
        automated match to d1m98a2
        complexed with raw; mutant
      2. 2506339Domain d3i1wb2: 3i1w B:174-312 [305546]
        Other proteins in same PDB: d3i1wa1, d3i1wb1
        automated match to d1m98a2
        complexed with raw; mutant
    3. Domains for 3i1x:
      1. 2506332Domain d3i1xa2: 3i1x A:174-312 [305548]
        Other proteins in same PDB: d3i1xa1, d3i1xb1
        automated match to d1m98a2
        complexed with gol, raw; mutant
      2. 2506333Domain d3i1xb2: 3i1x B:174-311 [305550]
        Other proteins in same PDB: d3i1xa1, d3i1xb1
        automated match to d1m98a2
        complexed with gol, raw; mutant
    4. Domains for 3mg1:
      1. 2506334Domain d3mg1a2: 3mg1 A:174-311 [213238]
        Other proteins in same PDB: d3mg1a1, d3mg1b1
        automated match to d1m98a2
        complexed with ech, gol
      2. 2506335Domain d3mg1b2: 3mg1 B:174-312 [213240]
        Other proteins in same PDB: d3mg1a1, d3mg1b1
        automated match to d1m98a2
        complexed with ech, gol
    5. Domains for 3mg2:
      1. 2506340Domain d3mg2a2: 3mg2 A:174-312 [213242]
        Other proteins in same PDB: d3mg2a1, d3mg2b1
        automated match to d1m98a2
        complexed with ech; mutant
      2. 2506341Domain d3mg2b2: 3mg2 B:174-312 [213244]
        Other proteins in same PDB: d3mg2a1, d3mg2b1
        automated match to d1m98a2
        complexed with ech; mutant
    6. Domains for 3mg3:
      1. 2506336Domain d3mg3a2: 3mg3 A:174-312 [213246]
        Other proteins in same PDB: d3mg3a1, d3mg3b1
        automated match to d1m98a2
        complexed with ech, gol; mutant
      2. 2506337Domain d3mg3b2: 3mg3 B:174-311 [213248]
        Other proteins in same PDB: d3mg3a1, d3mg3b1
        automated match to d1m98a2
        complexed with ech, gol; mutant
  27. 2506342Xanthomonas campestris [TaxId:340] [225616] (1 PDB entry)
  28. 3048295Streptomyces laurentii [TaxId:39478] [348357] (1 PDB entry)

More info for Protein automated matches from d.17.4.0: automated matches

Timeline for Protein automated matches from d.17.4.0: automated matches: