Lineage for Protein: automated matches

  1. Root: SCOPe 2.01
  2. 901761Class a: All alpha proteins [46456] (284 folds)
  3. 909266Fold a.22: Histone-fold [47112] (1 superfamily)
    core: 3 helices; long middle helix is flanked at each end with shorter ones
  4. 909267Superfamily a.22.1: Histone-fold [47113] (4 families) (S)
  5. 909268Family a.22.1.1: Nucleosome core histones [47114] (6 proteins)
    form octamers composed of two copies of each of the four histones
  6. 909610Protein automated matches [190203] (5 species)
    not a true protein

Species:

  1. 909611African clawed frog (Xenopus laevis) [TaxId:8355] [187086] (10 PDB entries)
    1. Domains for 2f8n:
      1. 909623Domain d2f8na_: 2f8n A: [133133]
        Other proteins in same PDB: d2f8nb1, d2f8nf1, d2f8nh1, d2f8nk1
        automated match to d1kx5a_
        protein/DNA complex
      2. 909624Domain d2f8ne_: 2f8n E: [133136]
        Other proteins in same PDB: d2f8nb1, d2f8nf1, d2f8nh1, d2f8nk1
        automated match to d1kx5a_
        protein/DNA complex
    2. Domain for 2hue:
    3. Domains for 2nzd:
      1. 909619Domain d2nzdc_: 2nzd C: [138850]
        Other proteins in same PDB: d2nzda_, d2nzdb1, d2nzde_, d2nzdf1
        automated match to d1kx5c_
        protein/DNA complex; complexed with mn
      2. 909620Domain d2nzdg_: 2nzd G: [138853]
        Other proteins in same PDB: d2nzda_, d2nzdb1, d2nzde_, d2nzdf1
        automated match to d1kx5c_
        protein/DNA complex; complexed with mn
    4. Domains for 3kuy:
      1. 909629Domain d3kuyc_: 3kuy C: [179729]
        Other proteins in same PDB: d3kuya_, d3kuye_
        automated match to d1kx5c_
        protein/DNA complex; complexed with atv, mn
      2. 909630Domain d3kuyg_: 3kuy G: [179731]
        Other proteins in same PDB: d3kuya_, d3kuye_
        automated match to d1kx5c_
        protein/DNA complex; complexed with atv, mn
    5. Domains for 3lz0:
      1. 909625Domain d3lz0c_: 3lz0 C: [180644]
        Other proteins in same PDB: d3lz0a_, d3lz0e_
        automated match to d1kx5c_
        protein/DNA complex; complexed with cl, mn
      2. 909626Domain d3lz0g_: 3lz0 G: [180646]
        Other proteins in same PDB: d3lz0a_, d3lz0e_
        automated match to d1kx5c_
        protein/DNA complex; complexed with cl, mn
    6. Domains for 3lz1:
      1. 909627Domain d3lz1c_: 3lz1 C: [180648]
        Other proteins in same PDB: d3lz1a_, d3lz1e_
        automated match to d1kx5c_
        protein/DNA complex; complexed with cl, mn
      2. 909628Domain d3lz1g_: 3lz1 G: [180650]
        Other proteins in same PDB: d3lz1a_, d3lz1e_
        automated match to d1kx5c_
        protein/DNA complex; complexed with cl, mn
    7. Domains for 3mgp:
      1. 909615Domain d3mgpc_: 3mgp C: [181194]
        Other proteins in same PDB: d3mgpa_, d3mgpe_
        automated match to d1kx5c_
        protein/DNA complex; complexed with cl, co
      2. 909616Domain d3mgpg_: 3mgp G: [181196]
        Other proteins in same PDB: d3mgpa_, d3mgpe_
        automated match to d1kx5c_
        protein/DNA complex; complexed with cl, co
    8. Domains for 3mgq:
      1. 909621Domain d3mgqc_: 3mgq C: [181198]
        Other proteins in same PDB: d3mgqa_, d3mgqe_
        automated match to d1kx5c_
        protein/DNA complex; complexed with cl, ni
      2. 909622Domain d3mgqg_: 3mgq G: [181200]
        Other proteins in same PDB: d3mgqa_, d3mgqe_
        automated match to d1kx5c_
        protein/DNA complex; complexed with cl, ni
    9. Domains for 3mgr:
      1. 909613Domain d3mgrc_: 3mgr C: [181202]
        Other proteins in same PDB: d3mgra_, d3mgre_
        automated match to d1kx5c_
        protein/DNA complex; complexed with cl, mn, rb
      2. 909614Domain d3mgrg_: 3mgr G: [181204]
        Other proteins in same PDB: d3mgra_, d3mgre_
        automated match to d1kx5c_
        protein/DNA complex; complexed with cl, mn, rb
    10. Domains for 3mnn:
      1. 909617Domain d3mnnc_: 3mnn C: [181452]
        Other proteins in same PDB: d3mnna_, d3mnne_
        automated match to d1kx5c_
        protein/DNA complex; complexed with mg, mml, ptw, ru, so4
      2. 909618Domain d3mnng_: 3mnn G: [181454]
        Other proteins in same PDB: d3mnna_, d3mnne_
        automated match to d1kx5c_
        protein/DNA complex; complexed with mg, mml, ptw, ru, so4
  2. 909631Chicken (Gallus gallus) [TaxId:9031] [186951] (1 PDB entry)
  3. 909634Human (Homo sapiens) [TaxId:9606] [187038] (6 PDB entries)
    1. Domains for 2cv5:
      1. 909635Domain d2cv5a_: 2cv5 A: [130847]
        Other proteins in same PDB: d2cv5b1, d2cv5c1, d2cv5d1, d2cv5f1, d2cv5g1, d2cv5h1
        automated match to d1kx5a_
        protein/DNA complex; complexed with cl, mn
      2. 909636Domain d2cv5e_: 2cv5 E: [130851]
        Other proteins in same PDB: d2cv5b1, d2cv5c1, d2cv5d1, d2cv5f1, d2cv5g1, d2cv5h1
        automated match to d1kx5a_
        protein/DNA complex; complexed with cl, mn
    2. Domain for 2f8n:
    3. Domains for 3a6n:
      1. 909643Domain d3a6na_: 3a6n A: [171819]
        automated match to d1kx5a_
        protein/DNA complex; complexed with cl, mn
      2. 909644Domain d3a6ne_: 3a6n E: [171820]
        automated match to d1kx5a_
        protein/DNA complex; complexed with cl, mn
    4. Domains for 3afa:
      1. 909637Domain d3afaa_: 3afa A: [172034]
        automated match to d1kx5a_
        protein/DNA complex; complexed with cl, mn
      2. 909638Domain d3afae_: 3afa E: [172035]
        automated match to d1kx5a_
        protein/DNA complex; complexed with cl, mn
    5. Domains for 3av1:
      1. 909639Domain d3av1a_: 3av1 A: [172344]
        automated match to d1kx5a_
        protein/DNA complex
      2. 909640Domain d3av1e_: 3av1 E: [172345]
        automated match to d1kx5a_
        protein/DNA complex
    6. Domains for 3av2:
      1. 909641Domain d3av2a_: 3av2 A: [172346]
        automated match to d1kx5a_
        protein/DNA complex
      2. 909642Domain d3av2e_: 3av2 E: [172347]
        automated match to d1kx5a_
        protein/DNA complex
  4. 909646Kluyveromyces lactis [TaxId:284590] [189974] (1 PDB entry)
  5. 909648Mouse (Mus musculus) [TaxId:10090] [187087] (1 PDB entry)

More info for Protein automated matches from a.22.1.1: Nucleosome core histones

Timeline for Protein automated matches from a.22.1.1: Nucleosome core histones: