SCOPe Funding Alert: SCOPe support from the NIH ended in April 2016. John-Marc Chandonia is the primary maintainer and has continued to develop SCOPe using vacation time. Three proposals to the NIH for continued funding have been unsuccessful. If our current NIH proposal is not funded, SCOPe will shut down permanently in Summer 2017 as Dr. Chandonia will need to seek a new position.

Lineage for Protein: automated matches

  1. Root: SCOPe 2.06
  2. 2152203Class d: Alpha and beta proteins (a+b) [53931] (385 folds)
  3. 2208465Fold d.167: Peptide deformylase [56419] (1 superfamily)
    alpha-beta(5)-alpha; 3 layers: a/b/a; meander beta-sheet wraps around the C-terminal alpha-helix
  4. 2208466Superfamily d.167.1: Peptide deformylase [56420] (2 families) (S)
    nickel-dependent enzyme
  5. 2208467Family d.167.1.1: Peptide deformylase [56421] (2 protein domains)
    automatically mapped to Pfam PF01327
  6. 2208586Protein automated matches [190200] (9 species)
    not a true protein

Species:

  1. 2208587Bacillus cereus [TaxId:226900] [188316] (1 PDB entry)
  2. 2208590Enterococcus faecium [TaxId:1352] [226815] (1 PDB entry)
  3. 2208593Escherichia coli [TaxId:469008] [194798] (3 PDB entries)
    1. Domains for 4al2:
      1. 2208596Domain d4al2a_: 4al2 A: [219016]
        automated match to d4az4a_
        complexed with h2s, ni
      2. 2208597Domain d4al2b_: 4al2 B: [219017]
        automated match to d4az4a_
        complexed with h2s, ni
      3. 2208598Domain d4al2c_: 4al2 C: [219018]
        automated match to d4az4a_
        complexed with h2s, ni
    2. Domain for 4al3:
    3. Domain for 4az4:
  4. 2208599Haemophilus influenzae [TaxId:281310] [279491] (2 PDB entries)
    1. Domains for 4wxk:
      1. 2208600Domain d4wxka_: 4wxk A: [279492]
        automated match to d1bs4a_
        complexed with gol, ni
      2. 2208601Domain d4wxkb_: 4wxk B: [279493]
        automated match to d1bs4a_
        complexed with gol, ni
      3. 2208602Domain d4wxkc_: 4wxk C: [279495]
        automated match to d1bs4a_
        complexed with gol, ni
      4. 2208603Domain d4wxkd_: 4wxk D: [279496]
        automated match to d1bs4a_
        complexed with gol, ni
    2. Domains for 4wxl:
      1. 2208604Domain d4wxla_: 4wxl A: [279494]
        automated match to d1bs4a_
        complexed with bb2, ni
      2. 2208605Domain d4wxlb_: 4wxl B: [279499]
        automated match to d1bs4a_
        complexed with bb2, ni
      3. 2208606Domain d4wxlc_: 4wxl C: [279498]
        automated match to d1bs4a_
        complexed with bb2, ni
      4. 2208607Domain d4wxld_: 4wxl D: [279497]
        automated match to d1bs4a_
        complexed with bb2, ni
  5. 2208608Staphylococcus aureus [TaxId:1280] [186945] (1 PDB entry)
  6. 2208611Staphylococcus aureus [TaxId:93062] [192454] (4 PDB entries)
    1. Domain for 3u7k:
    2. Domain for 3u7l:
    3. Domain for 3u7m:
    4. Domain for 3u7n:
  7. 2208616Streptococcus mutans [TaxId:210007] [255922] (1 PDB entry)
  8. 2208618Vibrio cholerae [TaxId:345073] [188814] (1 PDB entry)
  9. 2283335Streptococcus agalactiae [TaxId:1311] [326636] (10 PDB entries)
    1. Domain for 5jex:
    2. Domain for 5jey:
    3. Domain for 5jf1:
    4. Domain for 5jf2:
    5. Domain for 5jf3:
    6. Domain for 5jf4:
    7. Domain for 5jf5:
    8. Domain for 5jf6:
    9. Domain for 5jf7:
    10. Domain for 5jf8:

More info for Protein automated matches from d.167.1.1: Peptide deformylase

Timeline for Protein automated matches from d.167.1.1: Peptide deformylase: