SCOPe Funding Alert: SCOPe support from the NIH ended in April 2016. John-Marc Chandonia is the primary maintainer and has continued to develop SCOPe using vacation time. Three proposals to the NIH for continued funding have been unsuccessful. If our current NIH proposal is not funded, SCOPe will shut down permanently in Summer 2017 as Dr. Chandonia will need to seek a new position.

Lineage for Protein: automated matches

  1. Root: SCOPe 2.06
  2. 2078559Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2078560Fold c.1: TIM beta/alpha-barrel [51350] (33 superfamilies)
    contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678
    the first seven superfamilies have similar phosphate-binding sites
  4. 2079053Superfamily c.1.2: Ribulose-phoshate binding barrel [51366] (7 families) (S)
  5. 2079054Family c.1.2.1: Histidine biosynthesis enzymes [51367] (3 protein domains)
    structural evidence for the gene duplication within the barrel fold
    automatically mapped to Pfam PF00977
  6. 2079090Protein automated matches [190186] (10 species)
    not a true protein

Species:

  1. 2079091Actinomyces urogenitalis [TaxId:525246] [269148] (1 PDB entry)
  2. 2079093Arthrobacter aurescens [TaxId:43663] [260126] (1 PDB entry)
  3. 2079095Corynebacterium efficiens [TaxId:152794] [226694] (1 PDB entry)
  4. 2079098Mycobacterium tuberculosis [TaxId:83332] [189657] (4 PDB entries)
    1. Domains for 2y85:
      1. 2079102Domain d2y85a_: 2y85 A: [170683]
        automated match to d1vzwa1
        complexed with 137, cl, na
      2. 2079103Domain d2y85b_: 2y85 B: [170684]
        automated match to d1vzwa1
        complexed with 137, cl, na
      3. 2079104Domain d2y85c_: 2y85 C: [170685]
        automated match to d1vzwa1
        complexed with 137, cl, na
      4. 2079105Domain d2y85d_: 2y85 D: [170686]
        automated match to d1vzwa1
        complexed with 137, cl, na
    2. Domain for 2y88:
    3. Domain for 2y89:
    4. Domain for 3zs4:
  5. 2079106Streptomyces coelicolor [TaxId:100226] [277529] (1 PDB entry)
  6. 2079108Streptomyces coelicolor [TaxId:1902] [189237] (2 PDB entries)
    1. Domain for 2vep:
    2. Domain for 2x30:
  7. 2079111Streptomyces sp. [TaxId:465541] [259607] (2 PDB entries)
    1. Domain for 4w9t:
    2. Domain for 4x9s:
  8. 2079114Streptomyces sviceus [TaxId:463191] [258540] (2 PDB entries)
    1. Domain for 4tx9:
    2. Domain for 4u28:
  9. 2079117Thermotoga maritima [TaxId:2336] [186925] (4 PDB entries)
    1. Domain for 2a0n:
    2. Domains for 2w79:
      1. 2079120Domain d2w79a_: 2w79 A: [169091]
        automated match to d1qo2a_
        complexed with cl
      2. 2079121Domain d2w79b_: 2w79 B: [169092]
        automated match to d1qo2a_
        complexed with cl
    3. Domains for 2wjz:
      1. 2079122Domain d2wjza_: 2wjz A: [169386]
        Other proteins in same PDB: d2wjzb_, d2wjzd_, d2wjzf_
        automated match to d1gpwa_
        complexed with po4; mutant
      2. 2079123Domain d2wjzc_: 2wjz C: [169388]
        Other proteins in same PDB: d2wjzb_, d2wjzd_, d2wjzf_
        automated match to d1gpwa_
        complexed with po4; mutant
      3. 2079124Domain d2wjze_: 2wjz E: [169390]
        Other proteins in same PDB: d2wjzb_, d2wjzd_, d2wjzf_
        automated match to d1gpwa_
        complexed with po4; mutant
    4. Domain for 4ewn:
  10. 2283013Thermotoga maritima [TaxId:243274] [326314] (1 PDB entry)

More info for Protein automated matches from c.1.2.1: Histidine biosynthesis enzymes

Timeline for Protein automated matches from c.1.2.1: Histidine biosynthesis enzymes: