Lineage for Protein: automated matches

  1. Root: SCOPe 2.04
  2. 1689992Class e: Multi-domain proteins (alpha and beta) [56572] (68 folds)
  3. 1690252Fold e.3: beta-lactamase/transpeptidase-like [56600] (1 superfamily)
    contains a cluster of helices and an alpha+beta sandwich
  4. 1690253Superfamily e.3.1: beta-lactamase/transpeptidase-like [56601] (4 families) (S)
  5. 1690254Family e.3.1.1: beta-Lactamase/D-ala carboxypeptidase [56602] (19 proteins)
  6. 1690900Protein automated matches [190161] (19 species)
    not a true protein

Species:

  1. 1690901Anthrax bacillus (Bacillus anthracis) [TaxId:1392] [196311] (1 PDB entry)
  2. 1690903Bacillus licheniformis [TaxId:1402] [188244] (9 PDB entries)
    1. Domains for 2wk0:
      1. 1690905Domain d2wk0a_: 2wk0 A: [169392]
        automated match to d1i2wb_
        complexed with biy, cit, cl, eoh, so4
      2. 1690906Domain d2wk0b_: 2wk0 B: [169393]
        automated match to d1i2wb_
        complexed with biy, cit, cl, eoh, so4
    2. Domains for 2x71:
      1. 1690913Domain d2x71a_: 2x71 A: [169913]
        automated match to d1i2wb_
        complexed with eoh, l4c, so4
      2. 1690914Domain d2x71b_: 2x71 B: [169914]
        automated match to d1i2wb_
        complexed with eoh, l4c, so4
    3. Domains for 2y91:
      1. 1690909Domain d2y91a_: 2y91 A: [198694]
        automated match to d2y91b_
        complexed with 98j, cit, pge
      2. 1690910Domain d2y91b_: 2y91 B: [195980]
        automated match to d2wk0a_
        complexed with 98j, cit, pge
    4. Domains for 3b3x:
      1. 1690916Domain d3b3xa_: 3b3x A: [172422]
        automated match to d1i2wb_
        complexed with a33
      2. 1690917Domain d3b3xb_: 3b3x B: [172423]
        automated match to d1i2wb_
        complexed with a33
    5. Domains for 3soi:
      1. 1690907Domain d3soia_: 3soi A: [185472]
        automated match to d2blma_
        complexed with cit
      2. 1690908Domain d3soib_: 3soi B: [185473]
        automated match to d2blma_
        complexed with cit
    6. Domains for 4a5r:
      1. 1690911Domain d4a5ra_: 4a5r A: [193473]
        automated match to d2wk0a_
        complexed with cit, co2, pge, tbe
      2. 1690912Domain d4a5rb_: 4a5r B: [201399]
        automated match to d4a5ra_
        complexed with cit, co2, pge, tbe
    7. Domain for 4m3k:
    8. Domain for 4n1h:
    9. Domain for 4n9l:
  3. 1690919Citrobacter freundii [TaxId:546] [235913] (2 PDB entries)
    1. Domain for 3znw:
    2. Domains for 4d2o:
      1. 1690921Domain d4d2oa_: 4d2o A: [258911]
        automated match to d3znwa_
      2. 1690922Domain d4d2ob_: 4d2o B: [256772]
        automated match to d3znwa_
  4. 1690923Citrobacter sedlakii [TaxId:67826] [188289] (5 PDB entries)
    1. Domains for 3bfc:
      1. 1690936Domain d3bfca_: 3bfc A: [208632]
        automated match to d3bffd_
        complexed with im2
      2. 1690937Domain d3bfcb_: 3bfc B: [208633]
        automated match to d3bffd_
        complexed with im2
      3. 1690938Domain d3bfcc_: 3bfc C: [208634]
        automated match to d3bffd_
        complexed with im2
      4. 1690939Domain d3bfcd_: 3bfc D: [208635]
        automated match to d3bffd_
        complexed with im2
    2. Domains for 3bfd:
      1. 1690928Domain d3bfda_: 3bfd A: [172582]
        automated match to d1iyoa_
        complexed with cac; mutant
      2. 1690929Domain d3bfdb_: 3bfd B: [172583]
        automated match to d1iyoa_
        complexed with cac; mutant
      3. 1690930Domain d3bfdc_: 3bfd C: [172584]
        automated match to d1iyoa_
        complexed with cac; mutant
      4. 1690931Domain d3bfdd_: 3bfd D: [172585]
        automated match to d1iyoa_
        complexed with cac; mutant
    3. Domains for 3bfe:
      1. 1690940Domain d3bfea_: 3bfe A: [172586]
        automated match to d1iyoa_
        complexed with scn
      2. 1690941Domain d3bfeb_: 3bfe B: [172587]
        automated match to d1iyoa_
        complexed with scn
      3. 1690942Domain d3bfec_: 3bfe C: [172588]
        automated match to d1iyoa_
        complexed with scn
      4. 1690943Domain d3bfed_: 3bfe D: [172589]
        automated match to d1iyoa_
        complexed with scn
    4. Domains for 3bff:
      1. 1690924Domain d3bffa_: 3bff A: [194789]
        automated match to d3bffd_
        complexed with fpm, scn, sfr
      2. 1690925Domain d3bffb_: 3bff B: [199090]
        automated match to d3bffd_
        complexed with fpm, scn, sfr
      3. 1690926Domain d3bffc_: 3bff C: [194788]
        automated match to d3bffd_
        complexed with fpm, scn, sfr
      4. 1690927Domain d3bffd_: 3bff D: [172590]
        automated match to d1iyoa_
        complexed with fpm, scn, sfr
    5. Domains for 3bfg:
      1. 1690932Domain d3bfga_: 3bfg A: [208636]
        automated match to d3bffd_
        complexed with mer
      2. 1690933Domain d3bfgb_: 3bfg B: [208637]
        automated match to d3bffd_
        complexed with mer
      3. 1690934Domain d3bfgc_: 3bfg C: [208638]
        automated match to d3bffd_
        complexed with mer
      4. 1690935Domain d3bfgd_: 3bfg D: [208639]
        automated match to d3bffd_
        complexed with mer
  5. 1690944Enterobacter cloacae [TaxId:550] [187307] (3 PDB entries)
    1. Domain for 1y54:
    2. Domain for 2q9m:
    3. Domain for 2q9n:
  6. 1690948Escherichia coli [TaxId:469008] [188520] (1 PDB entry)
  7. 1690950Escherichia coli [TaxId:562] [187306] (41 PDB entries)
    1. Domain for 1ylj:
    2. Domain for 1ylp:
    3. Domain for 1ylt:
    4. Domain for 1ylw:
    5. Domains for 1yly:
      1. 1690965Domain d1ylya_: 1yly A: [162244]
        automated match to d1iysa_
        complexed with cb4, po4
      2. 1690966Domain d1ylyb_: 1yly B: [162245]
        automated match to d1iysa_
        complexed with cb4, po4
    6. Domains for 1ylz:
      1. 1690969Domain d1ylza_: 1ylz A: [162246]
        automated match to d1iysa_
        complexed with cb4, po4
      2. 1690970Domain d1ylzb_: 1ylz B: [162247]
        automated match to d1iysa_
        complexed with cb4, po4
    7. Domains for 1ym1:
      1. 1690954Domain d1ym1a_: 1ym1 A: [162249]
        automated match to d1iysa_
        complexed with po4, sm2
      2. 1690955Domain d1ym1b_: 1ym1 B: [162250]
        automated match to d1iysa_
        complexed with po4, sm2
    8. Domains for 1yms:
      1. 1690989Domain d1ymsa_: 1yms A: [162255]
        automated match to d1iysa_
        complexed with nbf
      2. 1690990Domain d1ymsb_: 1yms B: [162256]
        automated match to d1iysa_
        complexed with nbf
    9. Domains for 1ymx:
      1. 1690994Domain d1ymxa_: 1ymx A: [162258]
        automated match to d1iysa_
        complexed with cfx
      2. 1690995Domain d1ymxb_: 1ymx B: [162259]
        automated match to d1iysa_
        complexed with cfx
    10. Domains for 2p74:
      1. 1690951Domain d2p74a_: 2p74 A: [167042]
        automated match to d1iyqa_
        complexed with k, po4
      2. 1690952Domain d2p74b_: 2p74 B: [167043]
        automated match to d1iyqa_
        complexed with k, po4
    11. Domain for 2v1z:
    12. Domain for 2v20:
    13. Domains for 2zj9:
      1. 1691003Domain d2zj9a_: 2zj9 A: [171241]
        automated match to d1c3ba_
        complexed with ipa, na
      2. 1691004Domain d2zj9b_: 2zj9 B: [171242]
        automated match to d1c3ba_
        complexed with ipa, na
    14. Domains for 3c7u:
      1. 1691018Domain d3c7ua_: 3c7u A: [156017]
        Other proteins in same PDB: d3c7ub_, d3c7ud_
        automated match to d1axba_
      2. 1691019Domain d3c7uc_: 3c7u C: [156018]
        Other proteins in same PDB: d3c7ub_, d3c7ud_
        automated match to d1axba_
    15. Domains for 3c7v:
      1. 1691016Domain d3c7va_: 3c7v A: [156019]
        Other proteins in same PDB: d3c7vb_, d3c7vd_
        automated match to d1axba_
      2. 1691017Domain d3c7vc_: 3c7v C: [156020]
        Other proteins in same PDB: d3c7vb_, d3c7vd_
        automated match to d1axba_
    16. Domains for 3g2y:
      1. 1690971Domain d3g2ya_: 3g2y A: [176314]
        automated match to d1iyqa_
        complexed with dms, gf4
      2. 1690972Domain d3g2yb_: 3g2y B: [176315]
        automated match to d1iyqa_
        complexed with dms, gf4
    17. Domains for 3g2z:
      1. 1690987Domain d3g2za_: 3g2z A: [176316]
        automated match to d1iysa_
        complexed with dms, gz2
      2. 1690988Domain d3g2zb_: 3g2z B: [176317]
        automated match to d1iysa_
        complexed with dms, gz2
    18. Domain for 3g30:
    19. Domains for 3g31:
      1. 1691005Domain d3g31a_: 3g31 A: [176319]
        automated match to d1iysa_
        complexed with dms, gf1, po4
      2. 1691006Domain d3g31b_: 3g31 B: [176320]
        automated match to d1iysa_
        complexed with dms, gf1, po4
    20. Domains for 3g32:
      1. 1690967Domain d3g32a_: 3g32 A: [176321]
        automated match to d1iysa_
        complexed with 3g3, dms, po4
      2. 1690968Domain d3g32b_: 3g32 B: [176322]
        automated match to d1iysa_
        complexed with 3g3, dms, po4
    21. Domains for 3g34:
      1. 1690973Domain d3g34a_: 3g34 A: [176323]
        automated match to d1iysa_
        complexed with 1ce, dms, po4
      2. 1690974Domain d3g34b_: 3g34 B: [176324]
        automated match to d1iysa_
        complexed with 1ce, dms, po4
    22. Domains for 3g35:
      1. 1690981Domain d3g35a_: 3g35 A: [176325]
        automated match to d1iysa_
        complexed with dms, f13
      2. 1690982Domain d3g35b_: 3g35 B: [176326]
        automated match to d1iysa_
        complexed with dms, f13
    23. Domains for 3hlw:
      1. 1691001Domain d3hlwa_: 3hlw A: [177682]
        automated match to d1iysa_
        complexed with ce3
      2. 1691002Domain d3hlwb_: 3hlw B: [177683]
        automated match to d1iysa_
        complexed with ce3
    24. Domains for 3hre:
      1. 1690992Domain d3hrea_: 3hre A: [177794]
        automated match to d1iysa_
        complexed with po4
      2. 1690993Domain d3hreb_: 3hre B: [177795]
        automated match to d1iysa_
        complexed with po4
    25. Domains for 3huo:
      1. 1690983Domain d3huoa_: 3huo A: [177848]
        automated match to d1iysa_
        complexed with pnk, pnn
      2. 1690984Domain d3huob_: 3huo B: [177849]
        automated match to d1iysa_
        complexed with pnk, pnn
    26. Domains for 3hvf:
      1. 1690996Domain d3hvfa_: 3hvf A: [177864]
        automated match to d1iysa_
        complexed with pnk
      2. 1690997Domain d3hvfb_: 3hvf B: [177865]
        automated match to d1iysa_
        complexed with pnk
    27. Domains for 3jyi:
      1. 1691020Domain d3jyia_: 3jyi A: [178921]
        automated match to d1axba_
        complexed with epe, po4; mutant
      2. 1691021Domain d3jyib_: 3jyi B: [178922]
        automated match to d1axba_
        complexed with epe, po4; mutant
      3. 1691022Domain d3jyic_: 3jyi C: [178923]
        automated match to d1axba_
        complexed with epe, po4; mutant
      4. 1691023Domain d3jyid_: 3jyi D: [178924]
        automated match to d1axba_
        complexed with epe, po4; mutant
      5. 1691024Domain d3jyie_: 3jyi E: [178925]
        automated match to d1axba_
        complexed with epe, po4; mutant
      6. 1691025Domain d3jyif_: 3jyi F: [178926]
        automated match to d1axba_
        complexed with epe, po4; mutant
    28. Domains for 3q07:
      1. 1691010Domain d3q07a_: 3q07 A: [184106]
        automated match to d1iysa_
        complexed with wpp, ypp
      2. 1691011Domain d3q07b_: 3q07 B: [184107]
        automated match to d1iysa_
        complexed with wpp, ypp
    29. Domains for 3q1f:
      1. 1691008Domain d3q1fa_: 3q1f A: [184153]
        automated match to d1iysa_
        complexed with ypp
      2. 1691009Domain d3q1fb_: 3q1f B: [184154]
        automated match to d1iysa_
        complexed with ypp
    30. Domains for 3toi:
      1. 1691013Domain d3toia_: 3toi A: [216914]
        automated match to d1omeb_
      2. 1691014Domain d3toib_: 3toi B: [216915]
        automated match to d1omeb_
    31. Domains for 4dds:
      1. 1690975Domain d4ddsa_: 4dds A: [219709]
        automated match to d2p74a_
        complexed with 0j7, dms
      2. 1690976Domain d4ddsb_: 4dds B: [219710]
        automated match to d2p74a_
        complexed with 0j7, dms
    32. Domains for 4ddy:
      1. 1690977Domain d4ddya_: 4ddy A: [219711]
        automated match to d2p74a_
        complexed with dms, dn6
      2. 1690978Domain d4ddyb_: 4ddy B: [219712]
        automated match to d2p74a_
        complexed with dms, dn6
    33. Domains for 4de0:
      1. 1690957Domain d4de0a_: 4de0 A: [195747]
        automated match to d2p74a_
        complexed with 0jb, dms
      2. 1690958Domain d4de0b_: 4de0 B: [201690]
        automated match to d2p74a_
        complexed with 0jb, dms
    34. Domains for 4de1:
      1. 1690963Domain d4de1a_: 4de1 A: [219713]
        automated match to d2p74a_
        complexed with 0j6, dms
      2. 1690964Domain d4de1b_: 4de1 B: [219714]
        automated match to d2p74a_
        complexed with 0j6, dms
    35. Domains for 4de2:
      1. 1690979Domain d4de2a_: 4de2 A: [219715]
        automated match to d2p74a_
        complexed with dms, dn3
      2. 1690980Domain d4de2b_: 4de2 B: [219716]
        automated match to d2p74a_
        complexed with dms, dn3
    36. Domains for 4de3:
      1. 1690985Domain d4de3a_: 4de3 A: [219717]
        automated match to d2p74a_
        complexed with dms, dn8
      2. 1690986Domain d4de3b_: 4de3 B: [219718]
        automated match to d2p74a_
        complexed with dms, dn8
    37. Domain for 4hbt:
    38. Domain for 4hbu:
    39. Domain for 4ibr:
    40. Domain for 4id4:
    41. Domains for 4len:
      1. 1690999Domain d4lena_: 4len A: [257014]
        automated match to d1ylja_
        complexed with 2gk
      2. 1691000Domain d4lenb_: 4len B: [257833]
        automated match to d1ylja_
        complexed with 2gk
  8. 1691026Escherichia coli [TaxId:668369] [189787] (1 PDB entry)
  9. 1691031Escherichia sp. [TaxId:299586] [188841] (1 PDB entry)
  10. 1691034Klebsiella oxytoca [TaxId:571] [188743] (1 PDB entry)
  11. 1691036Klebsiella pneumoniae [TaxId:573] [188184] (3 PDB entries)
    1. Domains for 1zc2:
      1. 1691038Domain d1zc2a_: 1zc2 A: [162440]
        automated match to d1fr1a_
        complexed with cit
      2. 1691039Domain d1zc2b_: 1zc2 B: [162441]
        automated match to d1fr1a_
        complexed with cit
    2. Domains for 2zc7:
      1. 1691040Domain d2zc7a_: 2zc7 A: [171151]
        automated match to d1blsa_
      2. 1691041Domain d2zc7b_: 2zc7 B: [171152]
        automated match to d1blsa_
      3. 1691042Domain d2zc7c_: 2zc7 C: [171153]
        automated match to d1blsa_
      4. 1691043Domain d2zc7d_: 2zc7 D: [171154]
        automated match to d1blsa_
    3. Domain for 3zny:
  12. 1691044Morganella morganii [TaxId:582] [226088] (1 PDB entry)
  13. 1691047Oceanobacillus iheyensis [TaxId:182710] [189232] (1 PDB entry)
  14. 1691049Pneumococcus (Streptococcus pneumoniae) [TaxId:1313] [188417] (3 PDB entries)
    1. Domain for 2v2f:
    2. Domains for 2zc5:
      1. 1691053Domain d2zc5b_: 2zc5 B: [244906]
        automated match to d2c5wb1
        complexed with bmg, zn
      2. 1691054Domain d2zc5d_: 2zc5 D: [244907]
        automated match to d2c5wb1
        complexed with bmg, zn
    3. Domains for 2zc6:
      1. 1691051Domain d2zc6b_: 2zc6 B: [171149]
        automated match to d2c5wb1
        complexed with teb, zn
      2. 1691052Domain d2zc6d_: 2zc6 D: [171150]
        automated match to d2c5wb1
        complexed with teb, zn
  15. 1691055Pseudomonas aeruginosa [TaxId:287] [225853] (1 PDB entry)
  16. 1691059Serratia fonticola [TaxId:47917] [195324] (3 PDB entries)
    1. Domains for 4eqi:
      1. 1691062Domain d4eqia_: 4eqi A: [195331]
        automated match to d1dy6a_
        complexed with edo, na
      2. 1691063Domain d4eqib_: 4eqi B: [195330]
        automated match to d1dy6a_
        complexed with edo, na
    2. Domain for 4euz:
    3. Domain for 4ev4:
  17. 1691064Staphylococcus aureus [TaxId:1280] [189852] (8 PDB entries)
    1. Domains for 3q7v:
      1. 1691071Domain d3q7va_: 3q7v A: [184266]
        automated match to d1xa1c_
        complexed with gol, so4
      2. 1691072Domain d3q7vb_: 3q7v B: [184267]
        automated match to d1xa1c_
        complexed with gol, so4
    2. Domains for 3q7z:
      1. 1691065Domain d3q7za_: 3q7z A: [184268]
        automated match to d1xa1c_
        complexed with bou
      2. 1691066Domain d3q7zb_: 3q7z B: [184269]
        automated match to d1xa1c_
        complexed with bou
    3. Domains for 3q81:
      1. 1691069Domain d3q81a_: 3q81 A: [192784]
        automated match to d3q7za_
        complexed with gol, im2
      2. 1691070Domain d3q81b_: 3q81 B: [191934]
        automated match to d3q7va_
        complexed with gol, im2
    4. Domains for 3q82:
      1. 1691073Domain d3q82a_: 3q82 A: [191935]
        automated match to d3q7va_
        complexed with gol, mer
      2. 1691074Domain d3q82b_: 3q82 B: [191936]
        automated match to d3q7va_
        complexed with gol, mer
    5. Domains for 3uy6:
      1. 1691067Domain d3uy6a_: 3uy6 A: [201131]
        automated match to d3uy6b_
        complexed with gol, so4; mutant
      2. 1691068Domain d3uy6b_: 3uy6 B: [196046]
        automated match to d3q7za_
        complexed with gol, so4; mutant
    6. Domains for 3zg5:
      1. 1691075Domain d3zg5a3: 3zg5 A:328-668 [250787]
        Other proteins in same PDB: d3zg5a1, d3zg5a2, d3zg5b1, d3zg5b2
        automated match to d1vqqa3
        complexed with cd, cl
      2. 1691076Domain d3zg5b3: 3zg5 B:328-668 [250790]
        Other proteins in same PDB: d3zg5a1, d3zg5a2, d3zg5b1, d3zg5b2
        automated match to d1vqqa3
        complexed with cd, cl
    7. Domains for 4bl2:
      1. 1691077Domain d4bl2a3: 4bl2 A:328-668 [256553]
        Other proteins in same PDB: d4bl2a1, d4bl2a2, d4bl2b1, d4bl2b2
        automated match to d1vqqa3
        complexed with cd, cl; mutant
      2. 1691078Domain d4bl2b3: 4bl2 B:328-668 [256556]
        Other proteins in same PDB: d4bl2a1, d4bl2a2, d4bl2b1, d4bl2b2
        automated match to d1vqqa3
        complexed with cd, cl; mutant
    8. Domains for 4bl3:
      1. 1691079Domain d4bl3a3: 4bl3 A:328-668 [256559]
        Other proteins in same PDB: d4bl3a1, d4bl3a2
        automated match to d1vqqa3
        complexed with cd, cl, mur; mutant
      2. 1691080Domain d4bl3b3: 4bl3 B:328-668 [259321]
        Other proteins in same PDB: d4bl3b1, d4bl3b2
        automated match to d1vqqa3
        complexed with cd, cl, mur; mutant
  18. 1691081Staphylococcus aureus [TaxId:158878] [256157] (3 PDB entries)
    1. Domains for 3zfz:
      1. 1691082Domain d3zfza3: 3zfz A:328-668 [250775]
        Other proteins in same PDB: d3zfza1, d3zfza2, d3zfzb1, d3zfzb2
        automated match to d1vqqa3
        complexed with 1w8, ai8, cd, cl, mur
      2. 1691083Domain d3zfzb3: 3zfz B:328-668 [250778]
        Other proteins in same PDB: d3zfza1, d3zfza2, d3zfzb1, d3zfzb2
        automated match to d1vqqa3
        complexed with 1w8, ai8, cd, cl, mur
    2. Domains for 3zg0:
      1. 1691085Domain d3zg0a3: 3zg0 A:328-668 [250781]
        Other proteins in same PDB: d3zg0a1, d3zg0a2, d3zg0b1, d3zg0b2
        automated match to d1vqqa3
        complexed with 1w8, ai8, cd, cl, mur
      2. 1691086Domain d3zg0b3: 3zg0 B:328-668 [250784]
        Other proteins in same PDB: d3zg0a1, d3zg0a2, d3zg0b1, d3zg0b2
        automated match to d1vqqa3
        complexed with 1w8, ai8, cd, cl, mur
    3. Domain for 4cpk:
  19. 1691087Streptomyces sp. [TaxId:31952] [186885] (1 PDB entry)

More info for Protein automated matches from e.3.1.1: beta-Lactamase/D-ala carboxypeptidase

Timeline for Protein automated matches from e.3.1.1: beta-Lactamase/D-ala carboxypeptidase: