SCOPe Funding Alert: SCOPe support from the NIH ended in April 2016. John-Marc Chandonia is the primary maintainer and has continued to develop SCOPe using vacation time. Three proposals to the NIH for continued funding have been unsuccessful. If our current NIH proposal is not funded, SCOPe will shut down permanently in Summer 2017 as Dr. Chandonia will need to seek a new position.

Lineage for Protein: automated matches

  1. Root: SCOPe 2.06
  2. 2078559Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2101600Fold c.23: Flavodoxin-like [52171] (15 superfamilies)
    3 layers, a/b/a; parallel beta-sheet of 5 strand, order 21345
  4. 2102350Superfamily c.23.5: Flavoproteins [52218] (9 families) (S)
  5. 2102815Family c.23.5.0: automated matches [191330] (1 protein)
    not a true family
  6. 2102816Protein automated matches [190158] (22 species)
    not a true protein

Species:

  1. 2102817Agrobacterium tumefaciens [TaxId:176299] [225483] (1 PDB entry)
  2. 2102819Azotobacter vinelandii [TaxId:354] [186881] (1 PDB entry)
  3. 2102821Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] [255831] (1 PDB entry)
  4. 2102823Citrobacter braakii [TaxId:57706] [257348] (1 PDB entry)
  5. 2102825Desulfovibrio desulfuricans [TaxId:525146] [189135] (2 PDB entries)
    1. Domain for 3kap:
    2. Domain for 3kaq:
  6. 2102828Desulfovibrio desulfuricans [TaxId:876] [188896] (3 PDB entries)
    1. Domains for 3f6r:
      1. 2102829Domain d3f6ra_: 3f6r A: [175514]
        automated match to d1j9ea_
        complexed with fmn
      2. 2102830Domain d3f6rb_: 3f6r B: [175515]
        automated match to d1j9ea_
        complexed with fmn
      3. 2102831Domain d3f6rc_: 3f6r C: [175516]
        automated match to d1j9ea_
        complexed with fmn
      4. 2102832Domain d3f6rd_: 3f6r D: [175517]
        automated match to d1j9ea_
        complexed with fmn
    2. Domains for 3f6s:
      1. 2102833Domain d3f6sa_: 3f6s A: [175518]
        automated match to d1j9ea_
        complexed with fmn
      2. 2102834Domain d3f6sb_: 3f6s B: [175519]
        automated match to d1j9ea_
        complexed with fmn
      3. 2102835Domain d3f6sd_: 3f6s D: [175520]
        automated match to d1j9ea_
        complexed with fmn
      4. 2102836Domain d3f6se_: 3f6s E: [175521]
        automated match to d1j9ea_
        complexed with fmn
      5. 2102837Domain d3f6sf_: 3f6s F: [175522]
        automated match to d1j9ea_
        complexed with fmn
      6. 2102838Domain d3f6sg_: 3f6s G: [175523]
        automated match to d1j9ea_
        complexed with fmn
      7. 2102839Domain d3f6sh_: 3f6s H: [175524]
        automated match to d1j9ea_
        complexed with fmn
      8. 2102840Domain d3f6si_: 3f6s I: [175525]
        automated match to d1j9ea_
        complexed with fmn
    3. Domains for 3f90:
      1. 2102841Domain d3f90a_: 3f90 A: [175579]
        automated match to d1j9ea_
        complexed with fmn
      2. 2102842Domain d3f90b_: 3f90 B: [175580]
        automated match to d1j9ea_
        complexed with fmn
      3. 2102843Domain d3f90d_: 3f90 D: [175581]
        automated match to d1j9ea_
        complexed with fmn
      4. 2102844Domain d3f90e_: 3f90 E: [175582]
        automated match to d1j9ea_
        complexed with fmn
      5. 2102845Domain d3f90f_: 3f90 F: [175583]
        automated match to d1j9ea_
        complexed with fmn
      6. 2102846Domain d3f90g_: 3f90 G: [175584]
        automated match to d1j9ea_
        complexed with fmn
      7. 2102847Domain d3f90h_: 3f90 H: [175585]
        automated match to d1j9ea_
        complexed with fmn
      8. 2102848Domain d3f90i_: 3f90 I: [175586]
        automated match to d1j9ea_
        complexed with fmn
  7. 2102849Escherichia coli K-12 [TaxId:83333] [188285] (5 PDB entries)
    1. Domains for 3b6i:
      1. 2102850Domain d3b6ia_: 3b6i A: [172434]
        automated match to d1zwka1
        complexed with 15p, fmn
      2. 2102851Domain d3b6ib_: 3b6i B: [172435]
        automated match to d1zwka1
        complexed with 15p, fmn
    2. Domains for 3b6j:
      1. 2102854Domain d3b6ja_: 3b6j A: [172436]
        automated match to d1zwka1
        complexed with 15p, amp, fmn, nad
      2. 2102855Domain d3b6jb_: 3b6j B: [172437]
        automated match to d1zwka1
        complexed with 15p, amp, fmn, nad
    3. Domains for 3b6k:
      1. 2102856Domain d3b6ka_: 3b6k A: [172438]
        automated match to d1zwka1
        complexed with 15p, fmn, plq
      2. 2102857Domain d3b6kb_: 3b6k B: [172439]
        automated match to d1zwka1
        complexed with 15p, fmn, plq
    4. Domains for 3b6m:
      1. 2102852Domain d3b6ma_: 3b6m A: [172440]
        automated match to d1zwka1
        complexed with 144, 15p, fmn
      2. 2102853Domain d3b6mb_: 3b6m B: [172441]
        automated match to d1zwka1
        complexed with 144, 15p, fmn
    5. Domains for 3svl:
      1. 2102858Domain d3svla_: 3svl A: [233645]
        automated match to d3u7ra_
        complexed with ca, fmn
      2. 2102859Domain d3svlb_: 3svl B: [239781]
        automated match to d3svla_
        complexed with ca, fmn
  8. 2102860Escherichia coli [TaxId:469008] [267794] (2 PDB entries)
    1. Domain for 2m6r:
    2. Domain for 2m6s:
  9. 2102863Escherichia coli [TaxId:562] [255218] (2 PDB entries)
    1. Domain for 2hna:
    2. Domain for 2hnb:
  10. 2102866Escherichia coli [TaxId:83333] [259351] (4 PDB entries)
    1. Domain for 2mt9:
    2. Domain for 2mtb:
    3. Domain for 4d02:
    4. Domain for 5lld:
  11. 2102868Human (Homo sapiens) [TaxId:9606] [226640] (6 PDB entries)
    1. Domains for 3qe2:
      1. 2102869Domain d3qe2a1: 3qe2 A:69-239 [248857]
        Other proteins in same PDB: d3qe2a2, d3qe2a3, d3qe2b2, d3qe2b3
        automated match to d1ja1a2
        complexed with ca, fad, fmn, nap
      2. 2102870Domain d3qe2b1: 3qe2 B:69-239 [248860]
        Other proteins in same PDB: d3qe2a2, d3qe2a3, d3qe2b2, d3qe2b3
        automated match to d1ja1a2
        complexed with ca, fad, fmn, nap
    2. Domains for 3qfc:
      1. 2102873Domain d3qfca1: 3qfc A:69-242 [248869]
        Other proteins in same PDB: d3qfca2, d3qfca3, d3qfcb2, d3qfcb3
        automated match to d1ja1a2
        complexed with ca, fad, fmn, nap; mutant
      2. 2102874Domain d3qfcb1: 3qfc B:70-241 [248872]
        Other proteins in same PDB: d3qfca2, d3qfca3, d3qfcb2, d3qfcb3
        automated match to d1ja1a2
        complexed with ca, fad, fmn, nap; mutant
    3. Domains for 3qfr:
      1. 2102875Domain d3qfra1: 3qfr A:70-242 [248875]
        Other proteins in same PDB: d3qfra2, d3qfra3, d3qfrb2, d3qfrb3
        automated match to d1ja1a2
        complexed with ca, fad, fmn, nap; mutant
      2. 2102876Domain d3qfrb1: 3qfr B:70-240 [248878]
        Other proteins in same PDB: d3qfra2, d3qfra3, d3qfrb2, d3qfrb3
        automated match to d1ja1a2
        complexed with ca, fad, fmn, nap; mutant
    4. Domains for 4h2d:
      1. 2102871Domain d4h2da_: 4h2d A: [222332]
        automated match to d1bvyf_
        complexed with fmn
      2. 2102872Domain d4h2db_: 4h2d B: [222333]
        automated match to d1bvyf_
        complexed with fmn
    5. Domains for 5emn:
      1. 2277949Domain d5emnb1: 5emn B:70-238 [321250]
        Other proteins in same PDB: d5emna2, d5emna3, d5emnb2, d5emnb3
        automated match to d1ja1a2
        complexed with fad, fmn, nap; mutant
      2. 2277962Domain d5emna1: 5emn A:70-240 [321263]
        Other proteins in same PDB: d5emna2, d5emna3, d5emnb2, d5emnb3
        automated match to d1ja1a2
        complexed with fad, fmn, nap; mutant
    6. Domains for 5fa6:
      1. 2277965Domain d5fa6a1: 5fa6 A:70-242 [321266]
        Other proteins in same PDB: d5fa6a2, d5fa6a3, d5fa6b2, d5fa6b3
        automated match to d1ja1a2
        complexed with fad, fmn, nap
      2. 2277989Domain d5fa6b1: 5fa6 B:70-239 [321290]
        Other proteins in same PDB: d5fa6a2, d5fa6a3, d5fa6b2, d5fa6b3
        automated match to d1ja1a2
        complexed with fad, fmn, nap
  12. 2102877Methanothermobacter thermautotrophicus [TaxId:145262] [231062] (3 PDB entries)
    1. Domains for 2ohh:
      1. 2102878Domain d2ohha2: 2ohh A:255-403 [231070]
        Other proteins in same PDB: d2ohha1, d2ohhb1, d2ohhd1, d2ohhe1
        automated match to d1ycfa1
        complexed with fe, fmn, so4
      2. 2102879Domain d2ohhb2: 2ohh B:255-403 [231072]
        Other proteins in same PDB: d2ohha1, d2ohhb1, d2ohhd1, d2ohhe1
        automated match to d1ycfa1
        complexed with fe, fmn, so4
      3. 2102880Domain d2ohhe2: 2ohh E:255-403 [231075]
        Other proteins in same PDB: d2ohha1, d2ohhb1, d2ohhd1, d2ohhe1
        automated match to d1ycfa1
        complexed with fe, fmn, so4
    2. Domains for 2ohi:
      1. 2102885Domain d2ohia2: 2ohi A:255-403 [231074]
        Other proteins in same PDB: d2ohia1, d2ohib1, d2ohid1, d2ohie1, d2ohig1, d2ohih1, d2ohii1, d2ohij1
        automated match to d1ycfa1
        complexed with cl, fe, fmn
      2. 2102886Domain d2ohib2: 2ohi B:255-403 [231073]
        Other proteins in same PDB: d2ohia1, d2ohib1, d2ohid1, d2ohie1, d2ohig1, d2ohih1, d2ohii1, d2ohij1
        automated match to d1ycfa1
        complexed with cl, fe, fmn
      3. 2102887Domain d2ohid2: 2ohi D:255-403 [231071]
        Other proteins in same PDB: d2ohia1, d2ohib1, d2ohid1, d2ohie1, d2ohig1, d2ohih1, d2ohii1, d2ohij1
        automated match to d1ycfa1
        complexed with cl, fe, fmn
      4. 2102888Domain d2ohie2: 2ohi E:255-403 [231082]
        Other proteins in same PDB: d2ohia1, d2ohib1, d2ohid1, d2ohie1, d2ohig1, d2ohih1, d2ohii1, d2ohij1
        automated match to d1ycfa1
        complexed with cl, fe, fmn
      5. 2102889Domain d2ohig2: 2ohi G:255-403 [231076]
        Other proteins in same PDB: d2ohia1, d2ohib1, d2ohid1, d2ohie1, d2ohig1, d2ohih1, d2ohii1, d2ohij1
        automated match to d1ycfa1
        complexed with cl, fe, fmn
      6. 2102890Domain d2ohih2: 2ohi H:255-403 [231080]
        Other proteins in same PDB: d2ohia1, d2ohib1, d2ohid1, d2ohie1, d2ohig1, d2ohih1, d2ohii1, d2ohij1
        automated match to d1ycfa1
        complexed with cl, fe, fmn
      7. 2102891Domain d2ohii2: 2ohi I:255-403 [231083]
        Other proteins in same PDB: d2ohia1, d2ohib1, d2ohid1, d2ohie1, d2ohig1, d2ohih1, d2ohii1, d2ohij1
        automated match to d1ycfa1
        complexed with cl, fe, fmn
      8. 2102892Domain d2ohij2: 2ohi J:255-403 [231077]
        Other proteins in same PDB: d2ohia1, d2ohib1, d2ohid1, d2ohie1, d2ohig1, d2ohih1, d2ohii1, d2ohij1
        automated match to d1ycfa1
        complexed with cl, fe, fmn
    3. Domains for 2ohj:
      1. 2102881Domain d2ohja2: 2ohj A:255-403 [231085]
        Other proteins in same PDB: d2ohja1, d2ohjb1, d2ohjd1, d2ohje1
        automated match to d1ycfa1
        complexed with cl, fe, fmn
      2. 2102882Domain d2ohjb2: 2ohj B:255-403 [231078]
        Other proteins in same PDB: d2ohja1, d2ohjb1, d2ohjd1, d2ohje1
        automated match to d1ycfa1
        complexed with cl, fe, fmn
      3. 2102883Domain d2ohjd2: 2ohj D:255-403 [231087]
        Other proteins in same PDB: d2ohja1, d2ohjb1, d2ohjd1, d2ohje1
        automated match to d1ycfa1
        complexed with cl, fe, fmn
      4. 2102884Domain d2ohje2: 2ohj E:255-403 [231079]
        Other proteins in same PDB: d2ohja1, d2ohjb1, d2ohjd1, d2ohje1
        automated match to d1ycfa1
        complexed with cl, fe, fmn
  13. Moorella thermoacetica [TaxId:1525] [254979] (1 PDB entry)
  14. 2102897Norway rat (Rattus norvegicus) [TaxId:10116] [255999] (10 PDB entries)
    1. Domain for 3ojw:
    2. Domain for 3ojx:
    3. Domains for 4y7c:
      1. 2268583Domain d4y7ca1: 4y7c A:62-239 [311889]
        Other proteins in same PDB: d4y7ca2, d4y7ca3, d4y7cb2, d4y7cb3
        automated match to d1ja1a2
        complexed with fad, fmn, nap, po4; mutant
      2. 2270977Domain d4y7cb1: 4y7c B:64-236 [314282]
        Other proteins in same PDB: d4y7ca2, d4y7ca3, d4y7cb2, d4y7cb3
        automated match to d1ja1a2
        complexed with fad, fmn, nap, po4; mutant
    4. Domains for 4y9r:
      1. 2268578Domain d4y9ra1: 4y9r A:62-236 [311884]
        Other proteins in same PDB: d4y9ra2, d4y9ra3, d4y9rb2, d4y9rb3
        automated match to d1ja1a2
        complexed with fad, fmn, nap, po4; mutant
      2. 2270617Domain d4y9rb1: 4y9r B:63-236 [313922]
        Other proteins in same PDB: d4y9ra2, d4y9ra3, d4y9rb2, d4y9rb3
        automated match to d1ja1a2
        complexed with fad, fmn, nap, po4; mutant
    5. Domains for 4y9u:
      1. 2269174Domain d4y9ub1: 4y9u B:63-235 [312480]
        Other proteins in same PDB: d4y9ua2, d4y9ua3, d4y9ub2, d4y9ub3
        automated match to d1ja1a2
        complexed with fad, fmn, nap, po4; mutant
      2. 2270623Domain d4y9ua1: 4y9u A:62-239 [313928]
        Other proteins in same PDB: d4y9ua2, d4y9ua3, d4y9ub2, d4y9ub3
        automated match to d1ja1a2
        complexed with fad, fmn, nap, po4; mutant
    6. Domains for 4yaf:
      1. 2268941Domain d4yafa1: 4yaf A:61-235 [312247]
        Other proteins in same PDB: d4yafa2, d4yafa3, d4yafb2, d4yafb3
        automated match to d1ja1a2
        complexed with 2am, fad, fmn, po4
      2. 2269132Domain d4yafb1: 4yaf B:65-235 [312438]
        Other proteins in same PDB: d4yafa2, d4yafa3, d4yafb2, d4yafb3
        automated match to d1ja1a2
        complexed with 2am, fad, fmn, po4
    7. Domains for 4yal:
      1. 2268595Domain d4yalb1: 4yal B:62-236 [311901]
        Other proteins in same PDB: d4yala2, d4yala3, d4yalb2, d4yalb3
        automated match to d1ja1a2
        complexed with 2am, fad, fmn, po4
      2. 2271066Domain d4yala1: 4yal A:62-235 [314371]
        Other proteins in same PDB: d4yala2, d4yala3, d4yalb2, d4yalb3
        automated match to d1ja1a2
        complexed with 2am, fad, fmn, po4
    8. Domains for 4yao:
      1. 2268687Domain d4yaoa1: 4yao A:62-235 [311993]
        Other proteins in same PDB: d4yaoa2, d4yaoa3, d4yaob2, d4yaob3
        automated match to d1ja1a2
        complexed with 2am, fad, fmn, po4; mutant
      2. 2268783Domain d4yaob1: 4yao B:67-235 [312089]
        Other proteins in same PDB: d4yaoa2, d4yaoa3, d4yaob2, d4yaob3
        automated match to d1ja1a2
        complexed with 2am, fad, fmn, po4; mutant
    9. Domains for 4yau:
      1. 2268639Domain d4yaua1: 4yau A:62-236 [311945]
        Other proteins in same PDB: d4yaua2, d4yaua3, d4yaub2, d4yaub3
        automated match to d1ja1a2
        complexed with 2am, fad, fmn, po4; mutant
      2. 2268663Domain d4yaub1: 4yau B:67-236 [311969]
        Other proteins in same PDB: d4yaua2, d4yaua3, d4yaub2, d4yaub3
        automated match to d1ja1a2
        complexed with 2am, fad, fmn, po4; mutant
    10. Domains for 4yaw:
      1. 2268630Domain d4yawb1: 4yaw B:67-235 [311936]
        Other proteins in same PDB: d4yawa2, d4yawa3, d4yawb2, d4yawb3
        automated match to d1ja1a2
        complexed with 2am, fad, fmn, po4; mutant
      2. 2270656Domain d4yawa1: 4yaw A:59-236 [313961]
        Other proteins in same PDB: d4yawa2, d4yawa3, d4yawb2, d4yawb3
        automated match to d1ja1a2
        complexed with 2am, fad, fmn, po4; mutant
  15. 2102900Paracoccus denitrificans [TaxId:318586] [226510] (1 PDB entry)
  16. 2102903Pseudomonas sp. [TaxId:165468] [256995] (2 PDB entries)
    1. Domains for 4la4:
      1. 2102908Domain d4la4a_: 4la4 A: [256996]
        automated match to d1ydga_
      2. 2102909Domain d4la4b_: 4la4 B: [262917]
        automated match to d4la4a_
    2. Domains for 4laf:
      1. 2102904Domain d4lafa_: 4laf A: [266650]
        automated match to d4la4a_
        complexed with fmn
      2. 2102905Domain d4lafb_: 4laf B: [266651]
        automated match to d4la4a_
        complexed with fmn
      3. 2102906Domain d4lafc_: 4laf C: [266652]
        automated match to d4la4a_
        complexed with fmn
      4. 2102907Domain d4lafd_: 4laf D: [266653]
        automated match to d4la4a_
        complexed with fmn
  17. 2102910Sulfolobus tokodaii [TaxId:111955] [188428] (1 PDB entry)
  18. 2102919Thermotoga maritima [TaxId:2336] [226499] (2 PDB entries)
    1. Domains for 4dik:
      1. 2102920Domain d4dika2: 4dik A:251-398 [219780]
        Other proteins in same PDB: d4dika1, d4dika3, d4dikb1, d4dikb3
        automated match to d1vmea1
        complexed with cl, feo; mutant
      2. 2102921Domain d4dikb2: 4dik B:251-398 [219782]
        Other proteins in same PDB: d4dika1, d4dika3, d4dikb1, d4dikb3
        automated match to d1vmea1
        complexed with cl, feo; mutant
    2. Domains for 4dil:
      1. 2102922Domain d4dila2: 4dil A:251-398 [219784]
        Other proteins in same PDB: d4dila1, d4dilb1
        automated match to d1vmea1
        complexed with cl, feo; mutant
      2. 2102923Domain d4dilb2: 4dil B:251-398 [219786]
        Other proteins in same PDB: d4dila1, d4dilb1
        automated match to d1vmea1
        complexed with cl, feo; mutant
  19. 2270604Brucella abortus [TaxId:359391] [313909] (2 PDB entries)
    1. Domains for 5f4b:
      1. 2270738Domain d5f4ba_: 5f4b A: [314043]
        automated match to d2rg1b_
        complexed with cl, fmn
      2. 2270810Domain d5f4bb_: 5f4b B: [314115]
        automated match to d2rg1b_
        complexed with cl, fmn
    2. Domain for 5f51:
  20. 2278699Streptococcus pneumoniae [TaxId:1313] [322000] (1 PDB entry)
  21. 2278781Streptococcus pneumoniae [TaxId:170187] [322082] (1 PDB entry)
  22. 2287331Pseudomonas aeruginosa [TaxId:208964] [330632] (2 PDB entries)
    1. Domain for 5b3k:
    2. Domain for 5b3l:

More info for Protein automated matches from c.23.5.0: automated matches

Timeline for Protein automated matches from c.23.5.0: automated matches: