Lineage for Protein: automated matches

  1. Root: SCOPe 2.01
  2. 968085Class c: Alpha and beta proteins (a/b) [51349] (147 folds)
  3. 968086Fold c.1: TIM beta/alpha-barrel [51350] (33 superfamilies)
    contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678
    the first seven superfamilies have similar phosphate-binding sites
  4. 971605Superfamily c.1.9: Metallo-dependent hydrolases [51556] (19 families) (S)
    the beta-sheet barrel is similarly distorted and capped by a C-terminal helix
    has transition metal ions bound inside the barrel
  5. 972129Family c.1.9.0: automated matches [191327] (1 protein)
    not a true family
  6. 972130Protein automated matches [190150] (10 species)
    not a true protein

Species:

  1. 972131Arthrobacter aurescens [TaxId:290340] [189973] (1 PDB entry)
  2. 972134Deinococcus radiodurans [TaxId:1299] [188838] (1 PDB entry)
  3. 972136Escherichia coli K-12 [TaxId:83333] [186875] (1 PDB entry)
  4. 972138Geobacillus kaustophilus [TaxId:1462] [189526] (1 PDB entry)
  5. 972140Geobacillus stearothermophilus [TaxId:272567] [188974] (2 PDB entries)
    1. Domains for 3f4c:
      1. 972141Domain d3f4ca_: 3f4c A: [175456]
        automated match to d2d2ga1
        complexed with co, gol
      2. 972142Domain d3f4cb_: 3f4c B: [175457]
        automated match to d2d2ga1
        complexed with co, gol
    2. Domains for 3f4d:
      1. 972143Domain d3f4da_: 3f4d A: [175458]
        automated match to d2d2ga1
        complexed with co
      2. 972144Domain d3f4db_: 3f4d B: [175459]
        automated match to d2d2ga1
        complexed with co
  6. 972145Human (Homo sapiens) [TaxId:9606] [189102] (1 PDB entry)
  7. 972147Listeria monocytogenes [TaxId:267410] [189815] (1 PDB entry)
  8. 972154Salmonella typhimurium [TaxId:90371] [189010] (1 PDB entry)
  9. 972158Staphylococcus aureus [TaxId:196620] [187776] (1 PDB entry)
  10. 972161Sulfolobus solfataricus [TaxId:2287] [188418] (2 PDB entries)
    1. Domains for 2vc5:
      1. 972166Domain d2vc5a_: 2vc5 A: [168450]
        automated match to d2d2ga1
        complexed with co, edo, fe, gol
      2. 972167Domain d2vc5b_: 2vc5 B: [168451]
        automated match to d2d2ga1
        complexed with co, edo, fe, gol
      3. 972168Domain d2vc5c_: 2vc5 C: [168452]
        automated match to d2d2ga1
        complexed with co, edo, fe, gol
      4. 972169Domain d2vc5d_: 2vc5 D: [168453]
        automated match to d2d2ga1
        complexed with co, edo, fe, gol
    2. Domains for 2vc7:
      1. 972162Domain d2vc7a_: 2vc7 A: [168456]
        automated match to d2d2ga1
        complexed with co, edo, fe, gol, ht5
      2. 972163Domain d2vc7b_: 2vc7 B: [168457]
        automated match to d2d2ga1
        complexed with co, edo, fe, gol, ht5
      3. 972164Domain d2vc7c_: 2vc7 C: [168458]
        automated match to d2d2ga1
        complexed with co, edo, fe, gol, ht5
      4. 972165Domain d2vc7d_: 2vc7 D: [168459]
        automated match to d2d2ga1
        complexed with co, edo, fe, gol, ht5

More info for Protein automated matches from c.1.9.0: automated matches

Timeline for Protein automated matches from c.1.9.0: automated matches: